Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 5 5 O 1.21279 * 119.99925 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99961 * 180.02562 * 4 2 1 7 7 C 1.52992 * 109.47257 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47274 * 179.97438 * 7 6 4 9 9 N 1.46895 * 109.47064 * 179.97438 * 8 7 6 10 10 C 1.47844 * 111.00094 * 290.84503 * 9 8 7 11 11 C 1.54910 * 104.79782 * 213.63739 * 10 9 8 12 12 C 1.55134 * 101.65046 * 37.07006 * 11 10 9 13 13 O 1.42899 * 110.85975 * 82.80146 * 12 11 10 14 14 C 1.50702 * 110.70541 * 205.96545 * 12 11 10 15 15 H 1.07999 * 120.00185 * 113.60006 * 14 12 11 16 16 C 1.37883 * 120.00035 * 293.60076 * 14 12 11 17 17 N 1.31506 * 119.99924 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00073 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47224 * 89.99719 * 18 16 14 20 20 H 1.48495 * 109.47011 * 210.00214 * 18 16 14 21 21 H 1.48507 * 109.47096 * 329.99696 * 18 16 14 22 22 C 1.47442 * 111.00217 * 170.00208 * 9 8 7 23 23 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 24 24 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 25 25 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 26 26 H 1.09001 * 109.47347 * 179.72623 * 3 2 1 27 27 H 1.09004 * 109.47133 * 299.72731 * 3 2 1 28 28 H 1.09008 * 109.47066 * 59.72535 * 3 2 1 29 29 H 1.09004 * 109.46932 * 300.00223 * 6 4 2 30 30 H 1.08997 * 109.47392 * 59.99562 * 6 4 2 31 31 H 1.09004 * 109.47330 * 299.99977 * 7 6 4 32 32 H 1.09005 * 109.47124 * 59.99773 * 7 6 4 33 33 H 1.08999 * 109.46783 * 300.00124 * 8 7 6 34 34 H 1.09000 * 109.46608 * 60.00231 * 8 7 6 35 35 H 1.09003 * 110.37679 * 332.46558 * 10 9 8 36 36 H 1.09002 * 110.37780 * 94.80780 * 10 9 8 37 37 H 1.09005 * 110.98986 * 278.97790 * 11 10 9 38 38 H 1.08998 * 111.02769 * 155.17737 * 11 10 9 39 39 H 0.96701 * 113.99595 * 66.31185 * 13 12 11 40 40 H 0.96996 * 120.00075 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.88855 * 242.66640 * 22 9 8 42 42 H 1.09004 * 109.88418 * 3.69001 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0056 5 8 1.5323 -2.2175 0.0110 6 6 3.6458 -1.1674 0.0061 7 6 4.1557 -2.6098 0.0122 8 6 5.6858 -2.6099 0.0122 9 7 6.1753 -3.9949 0.0187 10 6 5.8889 -4.6520 1.3117 11 6 7.0811 -5.6147 1.5389 12 6 8.2647 -4.7864 0.9734 13 8 8.7482 -3.8592 1.9473 14 6 9.3744 -5.6929 0.5065 15 1 9.6207 -5.7483 -0.5435 16 6 10.0751 -6.4516 1.4200 17 7 9.7755 -6.3838 2.6987 18 14 11.4511 -7.5747 0.8414 19 1 12.7352 -6.8289 0.8493 20 1 11.5518 -8.7436 1.7518 21 1 11.1600 -8.0447 -0.5369 22 6 7.6295 -4.0424 -0.2201 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3634 -0.8924 -0.5096 26 1 3.2691 1.0694 0.0049 27 1 1.9379 1.8381 -0.8924 28 1 1.9305 1.8424 0.8876 29 1 4.0095 -0.6576 -0.8860 30 1 4.0088 -0.6495 0.8938 31 1 3.7920 -3.1200 0.9042 32 1 3.7927 -3.1273 -0.8758 33 1 6.0490 -2.0998 -0.8800 34 1 6.0491 -2.0923 0.9000 35 1 5.8407 -3.9124 2.1109 36 1 4.9551 -5.2115 1.2545 37 1 6.9485 -6.5397 0.9778 38 1 7.2206 -5.8207 2.6001 39 1 9.1571 -4.2761 2.7181 40 1 10.2687 -6.9173 3.3413 41 1 7.8359 -4.5808 -1.1451 42 1 8.0281 -3.0299 -0.2837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594015987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = -108.584178 kcal Electronic energy + Delta-G solvation = -21122.275621 eV Core-core repulsion = 17908.125989 eV Total energy + Delta-G solvation = -3214.149632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93794 -40.11307 -36.97416 -36.52228 -34.53477 -34.11449 -31.33875 -29.94085 -29.17798 -27.80888 -26.60245 -25.38162 -23.01148 -21.49200 -21.26116 -20.09469 -19.12246 -17.98053 -17.21760 -17.11407 -16.91659 -16.61991 -16.12174 -15.81460 -15.68605 -14.86935 -14.46725 -14.35182 -13.95270 -13.76010 -13.54047 -13.40328 -13.34296 -13.23919 -13.14265 -13.00431 -12.72792 -12.50146 -12.44923 -12.26970 -12.15792 -12.02826 -11.77227 -11.60372 -11.14170 -10.87296 -10.61466 -10.08720 -9.68945 -9.20332 -8.21777 -6.36464 1.41238 1.42924 1.52880 1.60442 2.07493 2.39148 3.02057 3.13450 3.60743 3.87556 4.01483 4.10790 4.19077 4.28610 4.39510 4.41200 4.50205 4.51689 4.55108 4.60049 4.68294 4.71520 4.76376 4.78738 4.87574 4.90784 4.99328 5.11422 5.18408 5.29121 5.37949 5.49029 5.53350 5.53709 5.81065 5.97815 6.20637 6.29804 6.35218 6.68047 7.15798 7.34171 7.44018 8.83766 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052962 B = 0.003190 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.555803 B = 8774.033535 C = 8869.140290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.067 3.933 4 C 0.504 3.496 5 O -0.589 6.589 6 C -0.129 4.129 7 C -0.088 4.088 8 C 0.055 3.945 9 N -0.534 5.534 10 C 0.054 3.946 11 C -0.126 4.126 12 C 0.220 3.780 13 O -0.598 6.598 14 C -0.557 4.557 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.916 5.916 18 Si 0.962 3.038 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.066 3.934 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.377 0.623 40 H 0.269 0.731 41 H 0.075 0.925 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 15.865 -4.294 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.359 5.359 3 C -0.075 4.075 4 C 0.294 3.706 5 O -0.470 6.470 6 C -0.169 4.169 7 C -0.126 4.126 8 C -0.073 4.073 9 N -0.258 5.258 10 C -0.074 4.074 11 C -0.165 4.165 12 C 0.180 3.820 13 O -0.407 6.407 14 C -0.595 4.595 15 H 0.075 0.925 16 C -0.174 4.174 17 N -0.557 5.557 18 Si 0.788 3.212 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.195 1.195 22 C -0.062 4.062 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.095 15.466 -4.965 21.506 hybrid contribution 1.316 -0.905 1.105 1.943 sum -12.779 14.561 -3.860 19.754 Atomic orbital electron populations 1.21702 0.78922 1.03432 1.02136 1.47975 1.07782 1.07079 1.73101 1.22158 0.98096 0.83664 1.03549 1.21259 0.91393 0.83076 0.74907 1.90687 1.71516 1.33037 1.51750 1.21645 0.89988 0.98753 1.06489 1.21144 0.93549 0.95715 1.02233 1.22331 0.95147 0.88728 1.01113 1.63632 1.13717 1.16960 1.31507 1.22942 0.98277 0.96462 0.89691 1.22993 0.95609 0.97750 1.00155 1.19957 0.90646 0.85921 0.85484 1.86051 1.80538 1.38606 1.35516 1.21904 1.18460 1.24868 0.94277 0.92461 1.25733 0.99105 0.97483 0.95045 1.69673 1.41947 1.42230 1.01808 0.85491 0.79225 0.78207 0.78288 1.20096 1.20674 1.19524 1.22689 0.86338 0.99281 0.97893 0.92612 0.88256 0.92744 0.88853 0.90115 0.90583 0.85953 0.86863 0.93472 0.92167 0.89574 0.95023 0.94502 0.90866 0.93211 0.92860 0.77230 0.92124 0.90643 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.48 127.77 1.34 2.53 16 2 N -0.63 -10.58 3.27 -871.89 -2.85 -13.44 16 3 C 0.07 0.53 10.60 127.77 1.35 1.89 16 4 C 0.50 12.16 7.67 87.66 0.67 12.84 16 5 O -0.59 -20.11 15.56 -3.03 -0.05 -20.15 16 6 C -0.13 -2.51 4.01 29.85 0.12 -2.39 16 7 C -0.09 -2.46 4.55 30.59 0.14 -2.32 16 8 C 0.05 1.69 4.57 86.31 0.39 2.09 16 9 N -0.53 -20.92 5.16 -885.54 -4.57 -25.49 16 10 C 0.05 2.22 5.77 86.77 0.50 2.72 16 11 C -0.13 -6.12 5.67 31.98 0.18 -5.93 16 12 C 0.22 11.20 0.85 -10.36 -0.01 11.19 16 13 O -0.60 -31.74 13.09 -148.98 -1.95 -33.69 16 14 C -0.56 -30.46 8.21 25.60 0.21 -30.25 16 15 H 0.06 3.10 7.53 -2.91 -0.02 3.08 16 16 C 0.03 1.40 5.28 84.66 0.45 1.85 16 17 N -0.92 -49.85 10.69 21.45 0.23 -49.62 16 18 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.07 2.89 6.21 86.65 0.54 3.43 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16 25 H 0.05 1.06 7.42 -2.38 -0.02 1.04 16 26 H 0.09 0.58 5.77 -2.39 -0.01 0.56 16 27 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.12 1.69 7.80 -2.38 -0.02 1.67 16 30 H 0.11 1.76 7.78 -2.39 -0.02 1.74 16 31 H 0.05 1.51 7.45 -2.38 -0.02 1.50 16 32 H 0.06 1.87 8.10 -2.38 -0.02 1.85 16 33 H 0.09 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.03 1.00 7.85 -2.39 -0.02 0.99 16 35 H 0.04 1.50 7.62 -2.39 -0.02 1.49 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.05 2.49 8.04 -2.38 -0.02 2.47 16 38 H 0.05 2.73 7.76 -2.39 -0.02 2.71 16 39 H 0.38 20.68 6.98 -74.06 -0.52 20.16 16 40 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.08 3.33 7.63 -2.39 -0.02 3.32 16 42 H 0.05 2.12 7.48 -2.39 -0.02 2.11 16 Total: -1.00 -67.78 334.70 -0.80 -68.58 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.48 Total: 31.41 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.89 Total: -2.36 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -7.20 Total: -88.54 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -2.00 Total: -53.85 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.78 -0.80 -68.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594015987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.000 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds