Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47045 * 2 1 4 4 C 1.42900 * 113.99516 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46926 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46960 * 65.00157 * 5 4 3 7 7 C 1.34781 * 120.00112 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99782 * 4.97935 * 7 6 5 9 9 N 1.34777 * 120.00020 * 184.98394 * 7 6 5 10 10 C 1.46920 * 120.62966 * 354.77097 * 9 7 6 11 11 C 1.53195 * 108.89195 * 233.67449 * 10 9 7 12 12 C 1.53034 * 109.30987 * 305.29089 * 11 10 9 13 13 C 1.53041 * 109.53698 * 61.37073 * 12 11 10 14 14 H 1.08995 * 109.49951 * 58.61570 * 13 12 11 15 15 C 1.50702 * 109.49878 * 178.67958 * 13 12 11 16 16 H 1.07999 * 119.99826 * 359.97438 * 15 13 12 17 17 C 1.37869 * 120.00156 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99896 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00164 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47338 * 60.00339 * 19 17 15 21 21 H 1.48505 * 109.47179 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47129 * 299.99745 * 19 17 15 23 23 C 1.47201 * 120.81180 * 174.90792 * 9 7 6 24 24 H 1.08994 * 109.47009 * 59.99774 * 1 2 3 25 25 H 1.08993 * 109.47316 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46802 * 299.99906 * 1 2 3 27 27 H 1.09005 * 109.46802 * 240.00094 * 2 1 3 28 28 H 1.08994 * 109.47009 * 120.00226 * 2 1 3 29 29 H 1.09003 * 109.47061 * 60.00681 * 4 3 2 30 30 H 1.09001 * 109.47354 * 300.00122 * 4 3 2 31 31 H 1.09007 * 109.47220 * 305.00632 * 5 4 3 32 32 H 1.09002 * 109.47507 * 185.00365 * 5 4 3 33 33 H 0.96996 * 119.99935 * 0.02562 * 6 5 4 34 34 H 1.09008 * 109.58722 * 113.81679 * 10 9 7 35 35 H 1.09004 * 109.59155 * 353.53081 * 10 9 7 36 36 H 1.08998 * 109.49738 * 65.25124 * 11 10 9 37 37 H 1.08999 * 109.49589 * 185.34219 * 11 10 9 38 38 H 1.09001 * 109.45683 * 181.38095 * 12 11 10 39 39 H 1.08993 * 109.46741 * 301.34251 * 12 11 10 40 40 H 0.97003 * 119.99421 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.53945 * 6.53553 * 23 9 7 42 42 H 1.09004 * 109.67937 * 246.23280 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 3.3879 3.5610 1.2507 7 6 3.6287 4.8683 1.4732 8 8 4.1272 5.5518 0.6000 9 7 3.3170 5.4178 2.6638 10 6 2.6110 4.6353 3.6874 11 6 1.3622 5.4060 4.1272 12 6 1.7679 6.8098 4.5821 13 6 2.4121 7.5600 3.4141 14 1 1.7075 7.6155 2.5843 15 6 2.7819 8.9532 3.8538 16 1 2.5776 9.2723 4.8652 17 6 3.3809 9.8205 2.9651 18 7 3.6292 9.4321 1.7333 19 14 3.8399 11.5472 3.5104 20 1 4.8010 11.4706 4.6398 21 1 4.4648 12.2747 2.3765 22 1 2.6182 12.2692 3.9480 23 6 3.6728 6.8138 2.9662 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8909 30 1 3.8341 0.9763 0.8891 31 1 3.3493 3.4412 -0.8429 32 1 4.9083 3.0254 -0.0913 33 1 2.9250 3.0324 1.9193 34 1 3.2657 4.4805 4.5451 35 1 2.3179 3.6708 3.2727 36 1 0.6676 5.4811 3.2905 37 1 0.8824 4.8806 4.9529 38 1 0.8842 7.3519 4.9186 39 1 2.4814 6.7337 5.4025 40 1 4.0510 10.0422 1.1082 41 1 4.0802 7.2878 2.0732 42 1 4.4151 6.8388 3.7640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595459302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = -82.247042 kcal Electronic energy + Delta-G solvation = -21484.682368 eV Core-core repulsion = 18271.674799 eV Total energy + Delta-G solvation = -3213.007569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64191 -38.27946 -36.75061 -34.43915 -33.25090 -31.81695 -31.37822 -29.72610 -28.60396 -24.99978 -24.39065 -23.02226 -22.39431 -21.70821 -20.02979 -18.76210 -17.47716 -16.99509 -16.48311 -16.12991 -15.48504 -14.87443 -14.58403 -14.40634 -13.96589 -13.63189 -13.49213 -13.22649 -13.05758 -12.69710 -12.50171 -12.39640 -11.99431 -11.80997 -11.72410 -11.55798 -11.20847 -10.92067 -10.83658 -10.46678 -10.33742 -10.16098 -9.85477 -9.80115 -9.34762 -9.02194 -8.88177 -8.64104 -8.34960 -7.55015 -5.91297 -4.00869 3.29686 3.37607 3.42471 3.43789 3.46571 3.95690 4.45576 4.53933 4.77531 4.78448 5.03414 5.03696 5.10655 5.17731 5.36719 5.37624 5.39825 5.57450 5.65931 5.68785 5.76622 5.88019 5.97075 6.05050 6.23920 6.38413 6.65730 6.74542 6.87755 6.89250 7.00980 7.06283 7.12610 7.43520 7.59566 7.82406 8.01142 8.14204 8.48120 8.69429 9.02678 9.36143 9.64300 11.13467 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.004147 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.541335 B = 6750.244309 C = 7293.676214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.384 6.384 4 C 0.052 3.948 5 C 0.143 3.857 6 N -0.753 5.753 7 C 0.700 3.300 8 O -0.584 6.584 9 N -0.624 5.624 10 C 0.116 3.884 11 C -0.133 4.133 12 C -0.109 4.109 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.130 3.870 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -19.796 -0.236 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.303 6.303 4 C -0.025 4.025 5 C 0.018 3.982 6 N -0.413 5.413 7 C 0.401 3.599 8 O -0.462 6.462 9 N -0.360 5.360 10 C -0.008 4.008 11 C -0.172 4.172 12 C -0.147 4.147 13 C 0.020 3.980 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.009 3.991 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.432 -19.045 -1.073 19.230 hybrid contribution 0.160 0.335 0.614 0.718 sum -2.271 -18.710 -0.459 18.853 Atomic orbital electron populations 1.21743 0.93723 1.02069 1.03418 1.22458 0.95728 0.83930 0.99878 1.87997 1.20796 1.26169 1.95385 1.22797 0.81821 0.97005 1.00900 1.21098 0.99478 0.89963 0.87692 1.45230 1.65214 1.09794 1.21076 1.15945 0.79584 0.81249 0.83087 1.90922 1.50799 1.60799 1.43661 1.47825 1.59971 1.15316 1.12923 1.21470 0.94099 0.93552 0.91697 1.21941 0.96783 0.98082 1.00354 1.21609 0.99855 0.93392 0.99843 1.18977 0.93020 0.93080 0.92919 0.95309 1.21038 1.40733 0.96628 0.97707 0.92481 1.25063 0.95645 0.98439 0.94903 1.69907 1.41777 1.35774 1.04044 0.86668 0.78659 0.84629 0.78071 1.20295 1.21292 1.20344 1.22200 0.98618 0.75389 1.02882 0.91776 0.91256 0.91705 0.93521 0.93505 0.91826 0.92787 0.90971 0.90497 0.77143 0.92327 0.92161 0.92164 0.92411 0.93127 0.93252 0.92638 0.86008 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.42 10.29 -35.23 -0.36 -4.78 16 4 C 0.05 0.51 6.07 37.16 0.23 0.74 16 5 C 0.14 1.94 6.06 -4.04 -0.02 1.92 16 6 N -0.75 -12.14 5.41 -65.22 -0.35 -12.49 16 7 C 0.70 15.09 8.30 -86.91 -0.72 14.37 16 8 O -0.58 -15.34 15.79 5.29 0.08 -15.25 16 9 N -0.62 -13.19 2.98 -178.27 -0.53 -13.72 16 10 C 0.12 1.89 6.38 -3.71 -0.02 1.87 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.24 5.11 -26.69 -0.14 -2.38 16 13 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.52 -14.48 8.56 -34.44 -0.29 -14.77 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -26.30 11.40 55.43 0.63 -25.66 16 19 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.13 3.26 5.42 -3.56 -0.02 3.24 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.39 5.40 5.96 -40.82 -0.24 5.15 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.06 0.81 5.64 -51.93 -0.29 0.51 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.12 3.59 5.14 -51.93 -0.27 3.33 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -33.44 336.28 -8.42 -41.86 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.11 Total: 3.37 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.83 Total: 5.00 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.25 Total: -51.87 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.28 Total: -20.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.44 -8.42 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595459302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.388 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds