Wall clock time and date at job start Mon Mar 30 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42903 * 109.47045 * 2 1 4 4 C 1.42900 * 113.99516 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46926 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46960 * 65.00157 * 5 4 3 7 7 C 1.34781 * 120.00112 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99782 * 4.97935 * 7 6 5 9 9 N 1.34777 * 120.00020 * 184.98394 * 7 6 5 10 10 C 1.46920 * 120.62966 * 354.77097 * 9 7 6 11 11 C 1.53195 * 108.89195 * 233.67449 * 10 9 7 12 12 C 1.53034 * 109.30987 * 305.29089 * 11 10 9 13 13 C 1.53041 * 109.53698 * 61.37073 * 12 11 10 14 14 H 1.08995 * 109.49951 * 58.61570 * 13 12 11 15 15 C 1.50702 * 109.49878 * 178.67958 * 13 12 11 16 16 H 1.07999 * 119.99826 * 359.97438 * 15 13 12 17 17 C 1.37869 * 120.00156 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99896 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00164 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47338 * 60.00339 * 19 17 15 21 21 H 1.48505 * 109.47179 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47129 * 299.99745 * 19 17 15 23 23 C 1.47201 * 120.81180 * 174.90792 * 9 7 6 24 24 H 1.08994 * 109.47009 * 59.99774 * 1 2 3 25 25 H 1.08993 * 109.47316 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46802 * 299.99906 * 1 2 3 27 27 H 1.09005 * 109.46802 * 240.00094 * 2 1 3 28 28 H 1.08994 * 109.47009 * 120.00226 * 2 1 3 29 29 H 1.09003 * 109.47061 * 60.00681 * 4 3 2 30 30 H 1.09001 * 109.47354 * 300.00122 * 4 3 2 31 31 H 1.09007 * 109.47220 * 305.00632 * 5 4 3 32 32 H 1.09002 * 109.47507 * 185.00365 * 5 4 3 33 33 H 0.96996 * 119.99935 * 0.02562 * 6 5 4 34 34 H 1.09008 * 109.58722 * 113.81679 * 10 9 7 35 35 H 1.09004 * 109.59155 * 353.53081 * 10 9 7 36 36 H 1.08998 * 109.49738 * 65.25124 * 11 10 9 37 37 H 1.08999 * 109.49589 * 185.34219 * 11 10 9 38 38 H 1.09001 * 109.45683 * 181.38095 * 12 11 10 39 39 H 1.08993 * 109.46741 * 301.34251 * 12 11 10 40 40 H 0.97003 * 119.99421 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.53945 * 6.53553 * 23 9 7 42 42 H 1.09004 * 109.67937 * 246.23280 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 7 3.3879 3.5610 1.2507 7 6 3.6287 4.8683 1.4732 8 8 4.1272 5.5518 0.6000 9 7 3.3170 5.4178 2.6638 10 6 2.6110 4.6353 3.6874 11 6 1.3622 5.4060 4.1272 12 6 1.7679 6.8098 4.5821 13 6 2.4121 7.5600 3.4141 14 1 1.7075 7.6155 2.5843 15 6 2.7819 8.9532 3.8538 16 1 2.5776 9.2723 4.8652 17 6 3.3809 9.8205 2.9651 18 7 3.6292 9.4321 1.7333 19 14 3.8399 11.5472 3.5104 20 1 4.8010 11.4706 4.6398 21 1 4.4648 12.2747 2.3765 22 1 2.6182 12.2692 3.9480 23 6 3.6728 6.8138 2.9662 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8333 0.9767 -0.8909 30 1 3.8341 0.9763 0.8891 31 1 3.3493 3.4412 -0.8429 32 1 4.9083 3.0254 -0.0913 33 1 2.9250 3.0324 1.9193 34 1 3.2657 4.4805 4.5451 35 1 2.3179 3.6708 3.2727 36 1 0.6676 5.4811 3.2905 37 1 0.8824 4.8806 4.9529 38 1 0.8842 7.3519 4.9186 39 1 2.4814 6.7337 5.4025 40 1 4.0510 10.0422 1.1082 41 1 4.0802 7.2878 2.0732 42 1 4.4151 6.8388 3.7640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595459302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:05 Heat of formation + Delta-G solvation = -105.841925 kcal Electronic energy + Delta-G solvation = -21485.705519 eV Core-core repulsion = 18271.674799 eV Total energy + Delta-G solvation = -3214.030719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25457 -39.16867 -38.38369 -35.88682 -35.15075 -33.46587 -32.27659 -31.48071 -29.73084 -26.99224 -25.98669 -23.64066 -23.61247 -23.27982 -21.71512 -20.40375 -19.08084 -18.21899 -17.81122 -17.48126 -16.74568 -16.54203 -16.30450 -15.60388 -15.25006 -15.18607 -14.84727 -14.69845 -14.26691 -14.21297 -14.02669 -13.63235 -13.49985 -13.08585 -12.83603 -12.68796 -12.57900 -12.26410 -12.24944 -12.19751 -11.95340 -11.84634 -11.61766 -11.22178 -10.93719 -10.82166 -10.53236 -10.49635 -10.14588 -9.23545 -8.07544 -6.25964 1.41955 1.44019 1.52454 1.82323 2.26157 2.43742 2.72177 3.09360 3.21853 3.92084 4.05406 4.16544 4.19596 4.25458 4.29410 4.38052 4.50497 4.55374 4.60638 4.61417 4.74457 4.81765 4.83204 4.90162 4.94702 5.07951 5.11156 5.27604 5.28663 5.31177 5.33598 5.55956 5.59081 5.66798 5.90851 6.00062 6.18821 6.30012 6.37718 6.87457 7.15957 7.44107 7.70811 8.95370 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.004147 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.541335 B = 6750.244309 C = 7293.676214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.062 3.938 5 C 0.137 3.863 6 N -0.730 5.730 7 C 0.691 3.309 8 O -0.642 6.642 9 N -0.629 5.629 10 C 0.111 3.889 11 C -0.126 4.126 12 C -0.104 4.104 13 C 0.037 3.963 14 H -0.019 1.019 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.144 3.856 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.408 0.592 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -22.247 1.753 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.014 4.014 5 C 0.012 3.988 6 N -0.390 5.390 7 C 0.392 3.608 8 O -0.524 6.524 9 N -0.365 5.365 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.141 4.141 13 C 0.018 3.982 14 H 0.000 1.000 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.193 1.193 23 C 0.021 3.979 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.919 -21.573 0.960 21.791 hybrid contribution 0.254 1.038 -0.027 1.069 sum -2.666 -20.535 0.933 20.728 Atomic orbital electron populations 1.21783 0.93678 1.03223 1.02352 1.22659 0.95828 0.82644 1.01334 1.87956 1.21450 1.28347 1.95699 1.22742 0.81597 0.93894 1.03215 1.21297 0.99566 0.92331 0.85565 1.45047 1.64068 1.07715 1.22169 1.16239 0.79317 0.82623 0.82581 1.90879 1.53353 1.62610 1.45577 1.47740 1.60372 1.14302 1.14055 1.21837 0.93830 0.94107 0.91355 1.21907 0.96898 0.96182 1.01427 1.21497 0.99661 0.95174 0.97808 1.18916 0.92426 0.93483 0.93384 1.00044 1.21499 1.40178 0.98004 0.97925 0.91810 1.25946 0.95660 1.02748 0.94811 1.70127 1.42875 1.36994 1.05378 0.85585 0.78715 0.79498 0.77705 1.19011 1.21550 1.19324 1.21611 0.98153 0.77752 1.00400 0.93029 0.89019 0.92572 0.92216 0.91789 0.89378 0.90425 0.93540 0.90159 0.75362 0.89921 0.88611 0.93679 0.87628 0.93036 0.92125 0.93211 0.90842 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.41 -8.59 10.29 -148.98 -1.53 -10.12 16 4 C 0.06 1.06 6.07 71.98 0.44 1.50 16 5 C 0.14 3.64 6.06 86.38 0.52 4.16 16 6 N -0.73 -22.81 5.41 -478.52 -2.59 -25.40 16 7 C 0.69 30.38 8.30 179.05 1.49 31.87 16 8 O -0.64 -35.58 15.79 -3.98 -0.06 -35.64 16 9 N -0.63 -26.66 2.98 -836.18 -2.50 -29.15 16 10 C 0.11 3.29 6.38 86.36 0.55 3.84 16 11 C -0.13 -3.89 6.08 30.67 0.19 -3.70 16 12 C -0.10 -4.12 5.11 30.62 0.16 -3.96 16 13 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 14 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 15 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.01 0.45 5.30 84.65 0.45 0.89 16 18 N -0.92 -57.65 11.40 21.45 0.24 -57.40 16 19 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.14 7.49 5.42 86.31 0.47 7.96 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.41 10.09 5.96 -92.71 -0.55 9.53 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.10 2.17 5.64 -2.38 -0.01 2.15 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.07 4.61 5.14 -2.39 -0.01 4.59 16 42 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.73 336.28 1.70 -77.03 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.44 Total: 19.26 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.67 Total: 14.18 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.84 Total: -111.96 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.60 Total: -45.76 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.73 1.70 -77.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595459302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.813 kcal (2) G-P(sol) polarization free energy of solvation -78.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds