Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09007 * 108.97578 * 61.42692 * 5 3 2 7 7 C 1.54251 * 108.99774 * 302.66455 * 5 3 2 8 8 N 1.44258 * 108.65874 * 160.77921 * 7 5 3 9 9 C 1.46893 * 111.00260 * 219.84736 * 8 7 5 10 10 C 1.48198 * 114.27509 * 93.38268 * 8 7 5 11 11 C 1.53929 * 112.77521 * 318.14285 * 10 8 7 12 12 N 1.44257 * 112.54703 * 318.37652 * 11 10 8 13 13 C 1.46898 * 111.00120 * 217.13700 * 12 11 10 14 14 C 1.52998 * 109.46971 * 67.37184 * 13 12 11 15 15 C 1.50692 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00272 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00108 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47135 * 119.99593 * 19 17 15 22 22 H 1.48501 * 109.46836 * 239.99431 * 19 17 15 23 23 C 1.46131 * 109.00211 * 180.27605 * 5 3 2 24 24 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 26 26 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 27 27 H 1.09002 * 109.60569 * 280.52574 * 7 5 3 28 28 H 1.09002 * 109.61257 * 41.02908 * 7 5 3 29 29 H 1.08999 * 109.47139 * 295.70544 * 9 8 7 30 30 H 1.09003 * 109.47252 * 55.70187 * 9 8 7 31 31 H 1.09005 * 109.47387 * 175.70443 * 9 8 7 32 32 H 1.09008 * 108.82286 * 197.28752 * 10 8 7 33 33 H 1.09006 * 108.81780 * 78.98976 * 10 8 7 34 34 H 1.09007 * 108.86296 * 197.59233 * 11 10 8 35 35 H 1.09000 * 108.86796 * 79.17394 * 11 10 8 36 36 H 1.08998 * 109.46823 * 187.36293 * 13 12 11 37 37 H 1.09000 * 109.47267 * 307.36705 * 13 12 11 38 38 H 1.09002 * 109.46839 * 299.99688 * 14 13 12 39 39 H 1.09000 * 109.47516 * 59.99673 * 14 13 12 40 40 H 0.96996 * 120.00057 * 180.02562 * 18 17 15 41 41 H 1.09003 * 108.93271 * 302.18894 * 23 5 3 42 42 H 1.08999 * 108.93717 * 60.87337 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9500 0.7991 -0.8962 7 6 4.1036 0.5178 1.2383 8 7 5.4935 0.2021 1.0159 9 6 5.8130 -1.1442 1.5091 10 6 6.4404 1.2050 1.5579 11 6 5.9832 2.6531 1.3062 12 7 5.4410 2.8399 -0.0175 13 6 5.8171 4.1522 -0.5601 14 6 7.3264 4.1881 -0.8078 15 6 7.7121 5.5340 -1.3651 16 1 6.9563 6.2883 -1.5268 17 6 9.0299 5.8022 -1.6695 18 7 9.9503 4.8836 -1.4730 19 14 9.5081 7.4710 -2.3596 20 1 8.2966 8.3204 -2.4847 21 1 10.4793 8.1246 -1.4460 22 1 10.1286 7.2941 -3.6971 23 6 3.9690 2.6796 0.0117 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0085 1.1461 2.1239 28 1 3.5372 -0.4030 1.3776 29 1 5.6823 -1.1753 2.5908 30 1 5.1475 -1.8699 1.0417 31 1 6.8465 -1.3863 1.2609 32 1 7.4144 1.0575 1.0910 33 1 6.5406 1.0495 2.6321 34 1 6.8363 3.3194 1.4349 35 1 5.2205 2.9145 2.0397 36 1 5.2907 4.3212 -1.4995 37 1 5.5472 4.9311 0.1530 38 1 7.8529 4.0189 0.1315 39 1 7.5963 3.4091 -1.5209 40 1 10.8774 5.0725 -1.6868 41 1 3.5421 3.1732 -0.8614 42 1 3.5804 3.1556 0.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595533568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -68.706350 kcal Electronic energy + Delta-G solvation = -21678.556663 eV Core-core repulsion = 18466.136263 eV Total energy + Delta-G solvation = -3212.420400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85836 -38.94209 -36.64296 -36.00758 -33.53342 -32.69425 -30.07462 -28.57298 -27.72499 -26.23456 -24.55729 -24.29013 -22.18463 -20.79801 -19.99653 -19.48758 -17.67302 -16.88681 -16.65742 -16.33575 -15.88028 -15.16734 -14.67534 -14.50793 -14.26940 -13.74128 -13.60478 -13.55472 -13.48362 -12.91494 -12.56678 -12.28154 -12.17704 -11.96631 -11.79891 -11.38270 -11.11700 -10.98429 -10.92025 -10.84758 -10.65186 -10.53710 -10.45942 -10.34539 -9.86684 -9.35961 -9.08533 -8.31347 -8.08137 -7.68828 -5.97409 -3.99403 2.13154 2.57504 3.33061 3.40625 3.44849 3.95106 4.36994 4.54049 4.72861 4.83712 4.91722 4.99406 5.05985 5.25777 5.32105 5.33315 5.38576 5.42287 5.46008 5.49082 5.64168 5.71780 5.80656 5.91761 6.04350 6.06685 6.19811 6.26107 6.31808 6.45283 6.53341 6.98676 7.16294 7.30128 7.50035 7.65170 7.68995 7.81947 7.93177 8.12602 8.46161 9.08097 9.64159 11.13865 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.004294 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.479516 B = 6518.512937 C = 7426.261038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.508 6.508 5 C -0.067 4.067 6 H 0.127 0.873 7 C 0.081 3.919 8 N -0.544 5.544 9 C 0.033 3.967 10 C 0.074 3.926 11 C 0.050 3.950 12 N -0.517 5.517 13 C 0.065 3.935 14 C 0.029 3.971 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.065 3.935 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.030 0.970 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.027 0.973 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -12.856 6.889 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.088 4.088 6 H 0.145 0.855 7 C -0.048 4.048 8 N -0.268 5.268 9 C -0.114 4.114 10 C -0.053 4.053 11 C -0.080 4.080 12 N -0.240 5.240 13 C -0.062 4.062 14 C -0.008 4.008 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.063 4.063 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.145 -12.926 6.091 20.106 hybrid contribution -0.342 1.590 0.935 1.876 sum -14.487 -11.336 7.027 19.691 Atomic orbital electron populations 1.23242 0.76734 1.03492 1.02486 1.86521 1.23095 1.33674 1.84152 1.23996 0.92172 0.81117 0.71785 1.90668 1.67263 1.36370 1.45246 1.20095 0.85028 0.99861 1.03789 0.85488 1.21616 0.89748 0.99179 0.94300 1.60137 1.02109 1.02370 1.62231 1.22362 1.02319 0.89758 0.97009 1.22517 0.96267 0.90712 0.95844 1.21997 1.00310 0.95977 0.89669 1.61380 1.06966 1.33566 1.22110 1.22430 1.00943 0.85303 0.97490 1.19116 0.87474 0.96973 0.97253 1.21233 0.93008 0.99217 1.42551 0.92754 1.24982 0.96663 0.96836 0.95786 1.69980 1.01197 1.33370 1.48602 0.86557 0.78476 0.84355 0.78733 1.19788 1.21093 1.21001 1.20838 0.89916 0.93551 1.02010 0.88224 0.92068 0.91925 0.94003 0.90381 0.96269 0.91489 0.91224 0.89903 0.95204 0.89196 0.95630 0.91874 0.96193 0.96493 0.95462 0.93094 0.90503 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.09 10.06 -39.24 -0.39 -4.48 16 3 C 0.47 6.31 7.23 36.00 0.26 6.57 16 4 O -0.51 -8.13 15.56 -18.76 -0.29 -8.42 16 5 C -0.07 -0.93 2.51 -94.38 -0.24 -1.16 16 6 H 0.13 1.81 8.12 -51.93 -0.42 1.39 16 7 C 0.08 1.01 4.76 -4.58 -0.02 0.98 16 8 N -0.54 -7.30 4.40 -242.54 -1.07 -8.37 16 9 C 0.03 0.35 9.33 60.06 0.56 0.91 16 10 C 0.07 1.08 5.77 -2.62 -0.02 1.06 16 11 C 0.05 0.83 4.86 -4.75 -0.02 0.81 16 12 N -0.52 -9.44 4.40 -239.24 -1.05 -10.49 16 13 C 0.06 1.37 4.75 -3.83 -0.02 1.35 16 14 C 0.03 0.75 4.95 -27.89 -0.14 0.61 16 15 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.06 1.04 3.58 -6.42 -0.02 1.02 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.04 0.53 6.96 -51.93 -0.36 0.17 16 28 H 0.08 0.84 6.95 -51.93 -0.36 0.48 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.63 7.95 -51.93 -0.41 0.21 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.03 0.38 8.04 -51.93 -0.42 -0.03 16 34 H 0.09 1.67 5.83 -51.93 -0.30 1.37 16 35 H 0.03 0.40 6.54 -51.93 -0.34 0.06 16 36 H 0.06 1.34 7.80 -51.93 -0.41 0.94 16 37 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.02 0.45 6.40 -51.93 -0.33 0.12 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.08 1.29 7.43 -51.93 -0.39 0.90 16 42 H 0.04 0.57 7.27 -51.93 -0.38 0.20 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -31.47 331.87 -8.13 -39.60 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.04 Total: -3.58 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 1.00 Total: 0.04 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -1.38 Total: -44.83 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.69 Total: -12.90 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.47 -8.13 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.107 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds