Wall clock time and date at job start Mon Mar 30 2020 01:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09007 * 108.97578 * 61.42692 * 5 3 2 7 7 C 1.54251 * 108.99774 * 302.66455 * 5 3 2 8 8 N 1.44258 * 108.65874 * 160.77921 * 7 5 3 9 9 C 1.46893 * 111.00260 * 219.84736 * 8 7 5 10 10 C 1.48198 * 114.27509 * 93.38268 * 8 7 5 11 11 C 1.53929 * 112.77521 * 318.14285 * 10 8 7 12 12 N 1.44257 * 112.54703 * 318.37652 * 11 10 8 13 13 C 1.46898 * 111.00120 * 217.13700 * 12 11 10 14 14 C 1.52998 * 109.46971 * 67.37184 * 13 12 11 15 15 C 1.50692 * 109.47159 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00395 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00272 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99969 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00108 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47135 * 119.99593 * 19 17 15 22 22 H 1.48501 * 109.46836 * 239.99431 * 19 17 15 23 23 C 1.46131 * 109.00211 * 180.27605 * 5 3 2 24 24 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 26 26 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 27 27 H 1.09002 * 109.60569 * 280.52574 * 7 5 3 28 28 H 1.09002 * 109.61257 * 41.02908 * 7 5 3 29 29 H 1.08999 * 109.47139 * 295.70544 * 9 8 7 30 30 H 1.09003 * 109.47252 * 55.70187 * 9 8 7 31 31 H 1.09005 * 109.47387 * 175.70443 * 9 8 7 32 32 H 1.09008 * 108.82286 * 197.28752 * 10 8 7 33 33 H 1.09006 * 108.81780 * 78.98976 * 10 8 7 34 34 H 1.09007 * 108.86296 * 197.59233 * 11 10 8 35 35 H 1.09000 * 108.86796 * 79.17394 * 11 10 8 36 36 H 1.08998 * 109.46823 * 187.36293 * 13 12 11 37 37 H 1.09000 * 109.47267 * 307.36705 * 13 12 11 38 38 H 1.09002 * 109.46839 * 299.99688 * 14 13 12 39 39 H 1.09000 * 109.47516 * 59.99673 * 14 13 12 40 40 H 0.96996 * 120.00057 * 180.02562 * 18 17 15 41 41 H 1.09003 * 108.93271 * 302.18894 * 23 5 3 42 42 H 1.08999 * 108.93717 * 60.87337 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 3.9500 0.7991 -0.8962 7 6 4.1036 0.5178 1.2383 8 7 5.4935 0.2021 1.0159 9 6 5.8130 -1.1442 1.5091 10 6 6.4404 1.2050 1.5579 11 6 5.9832 2.6531 1.3062 12 7 5.4410 2.8399 -0.0175 13 6 5.8171 4.1522 -0.5601 14 6 7.3264 4.1881 -0.8078 15 6 7.7121 5.5340 -1.3651 16 1 6.9563 6.2883 -1.5268 17 6 9.0299 5.8022 -1.6695 18 7 9.9503 4.8836 -1.4730 19 14 9.5081 7.4710 -2.3596 20 1 8.2966 8.3204 -2.4847 21 1 10.4793 8.1246 -1.4460 22 1 10.1286 7.2941 -3.6971 23 6 3.9690 2.6796 0.0117 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0085 1.1461 2.1239 28 1 3.5372 -0.4030 1.3776 29 1 5.6823 -1.1753 2.5908 30 1 5.1475 -1.8699 1.0417 31 1 6.8465 -1.3863 1.2609 32 1 7.4144 1.0575 1.0910 33 1 6.5406 1.0495 2.6321 34 1 6.8363 3.3194 1.4349 35 1 5.2205 2.9145 2.0397 36 1 5.2907 4.3212 -1.4995 37 1 5.5472 4.9311 0.1530 38 1 7.8529 4.0189 0.1315 39 1 7.5963 3.4091 -1.5209 40 1 10.8774 5.0725 -1.6868 41 1 3.5421 3.1732 -0.8614 42 1 3.5804 3.1556 0.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595533568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:40 Heat of formation + Delta-G solvation = -90.344003 kcal Electronic energy + Delta-G solvation = -21679.494942 eV Core-core repulsion = 18466.136263 eV Total energy + Delta-G solvation = -3213.358679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93082 -40.14661 -37.65053 -37.34331 -35.24549 -34.27992 -31.83384 -29.84601 -28.60392 -27.49743 -26.09383 -25.61657 -23.53990 -22.33070 -21.14113 -20.88589 -18.79985 -18.48569 -17.90078 -17.64054 -16.99882 -16.55977 -16.33170 -15.73144 -15.64563 -15.19647 -14.92482 -14.63441 -14.54093 -14.21094 -13.95181 -13.72340 -13.30881 -13.19250 -13.01970 -12.88120 -12.64026 -12.60465 -12.41514 -12.03162 -11.92520 -11.82937 -11.77139 -11.72265 -11.51070 -11.29536 -11.18776 -10.51898 -9.24263 -9.03320 -8.17776 -6.28389 1.07993 1.41205 1.41848 1.54778 1.61505 2.42015 2.90341 3.11881 3.15751 3.68301 3.71378 4.00523 4.04567 4.12223 4.30179 4.31838 4.34703 4.38303 4.42891 4.49771 4.51375 4.67431 4.72887 4.74100 4.79997 4.83981 4.88080 5.00809 5.09406 5.13100 5.15770 5.32914 5.48254 5.70649 5.79454 6.07762 6.19366 6.25205 6.32232 6.40560 6.67277 6.88372 7.40229 8.94264 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.004294 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.479516 B = 6518.512937 C = 7426.261038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.538 6.538 5 C -0.065 4.065 6 H 0.123 0.877 7 C 0.087 3.913 8 N -0.561 5.561 9 C 0.034 3.966 10 C 0.081 3.919 11 C 0.050 3.950 12 N -0.525 5.525 13 C 0.081 3.919 14 C 0.041 3.959 15 C -0.545 4.545 16 H 0.057 0.943 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.072 3.928 24 H 0.135 0.865 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.020 0.980 38 H -0.001 1.001 39 H -0.006 1.006 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.634 -13.571 7.375 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.320 3.680 4 O -0.427 6.427 5 C -0.085 4.085 6 H 0.141 0.859 7 C -0.042 4.042 8 N -0.286 5.286 9 C -0.113 4.113 10 C -0.046 4.046 11 C -0.079 4.079 12 N -0.248 5.248 13 C -0.046 4.046 14 C 0.004 3.996 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.055 4.055 24 H 0.153 0.847 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.424 -13.675 6.588 21.641 hybrid contribution 0.002 1.725 0.794 1.899 sum -15.422 -11.950 7.382 20.860 Atomic orbital electron populations 1.23581 0.74706 1.05842 1.02493 1.86498 1.24975 1.32133 1.83471 1.23757 0.91820 0.81331 0.71046 1.90663 1.67800 1.37446 1.46815 1.19975 0.85708 0.98301 1.04552 0.85916 1.21608 0.89333 0.99989 0.93272 1.60061 1.02334 1.03222 1.62959 1.22418 1.02628 0.88248 0.98002 1.22336 0.95620 0.89690 0.96991 1.22002 0.99567 0.97211 0.89119 1.61335 1.08748 1.31474 1.23245 1.22057 0.97753 0.87138 0.97700 1.18903 0.90433 0.95098 0.95213 1.21641 0.93556 1.00210 1.42898 0.92458 1.25905 0.96593 1.00959 0.95952 1.70107 1.01674 1.35606 1.49433 0.85421 0.78357 0.79346 0.78032 1.18825 1.20298 1.20375 1.20777 0.88007 0.95302 1.01449 0.84721 0.91883 0.92191 0.93986 0.88045 0.94833 0.89871 0.91495 0.91961 0.92995 0.91773 0.94202 0.92067 0.96192 0.98246 0.98746 0.92776 0.91583 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.24 10.06 -51.34 -0.52 -7.76 16 3 C 0.48 12.19 7.23 71.23 0.52 12.71 16 4 O -0.54 -16.74 15.56 21.94 0.34 -16.40 16 5 C -0.06 -1.71 2.51 -13.23 -0.03 -1.75 16 6 H 0.12 3.39 8.12 -2.38 -0.02 3.37 16 7 C 0.09 1.97 4.76 87.22 0.42 2.39 16 8 N -0.56 -14.17 4.40 -921.27 -4.05 -18.22 16 9 C 0.03 0.64 9.33 127.69 1.19 1.83 16 10 C 0.08 2.33 5.77 86.37 0.50 2.83 16 11 C 0.05 1.69 4.86 87.11 0.42 2.12 16 12 N -0.52 -19.49 4.40 -910.82 -4.01 -23.50 16 13 C 0.08 3.53 4.75 86.30 0.41 3.94 16 14 C 0.04 2.20 4.95 29.84 0.15 2.35 16 15 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.07 2.30 3.58 83.96 0.30 2.60 16 24 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 26 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 27 H 0.04 0.97 6.96 -2.39 -0.02 0.95 16 28 H 0.10 1.84 6.95 -2.39 -0.02 1.83 16 29 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.29 7.95 -2.39 -0.02 1.27 16 31 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.05 1.26 8.04 -2.38 -0.02 1.24 16 34 H 0.06 2.48 5.83 -2.38 -0.01 2.47 16 35 H 0.04 1.22 6.54 -2.39 -0.02 1.20 16 36 H 0.06 2.67 7.80 -2.39 -0.02 2.65 16 37 H 0.02 0.86 8.10 -2.39 -0.02 0.84 16 38 H 0.00 -0.04 6.40 -2.39 -0.02 -0.05 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.07 2.23 7.43 -2.39 -0.02 2.21 16 42 H 0.03 1.11 7.27 -2.39 -0.02 1.10 16 Total: -1.00 -68.36 331.87 0.82 -67.54 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.98 Total: 7.92 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.76 Total: 0.08 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -7.77 Total: -98.12 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.18 Total: -24.15 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.36 0.82 -67.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.802 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds