Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00031 * 2 1 4 4 O 1.20825 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00131 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.85985 * 301.29109 * 5 3 2 7 7 C 1.50796 * 108.95582 * 59.99448 * 5 3 2 8 8 N 1.47915 * 108.50481 * 213.22442 * 7 5 3 9 9 C 1.46900 * 110.99852 * 153.79177 * 8 7 5 10 10 C 1.40003 * 114.06589 * 280.07854 * 8 7 5 11 11 C 1.54199 * 112.08462 * 61.80680 * 10 8 7 12 12 N 1.44571 * 108.85322 * 281.18368 * 11 10 8 13 13 C 1.46902 * 111.00050 * 220.34864 * 12 11 10 14 14 C 1.53001 * 109.47217 * 66.04249 * 13 12 11 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.48070 * 113.86196 * 94.22360 * 12 11 10 24 24 H 1.09007 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47291 * 299.99973 * 1 2 3 26 26 H 1.09006 * 109.47039 * 60.00660 * 1 2 3 27 27 H 1.09001 * 109.63110 * 93.52176 * 7 5 3 28 28 H 1.09002 * 109.63290 * 332.92912 * 7 5 3 29 29 H 1.09005 * 109.47130 * 184.01655 * 9 8 7 30 30 H 1.09004 * 109.47283 * 304.01031 * 9 8 7 31 31 H 1.08996 * 109.47187 * 64.01210 * 9 8 7 32 32 H 1.09004 * 108.96198 * 301.13668 * 10 8 7 33 33 H 1.08999 * 108.96492 * 182.47842 * 10 8 7 34 34 H 1.09001 * 109.58092 * 161.36753 * 11 10 8 35 35 H 1.09007 * 109.67480 * 41.05213 * 11 10 8 36 36 H 1.09002 * 109.46978 * 306.04519 * 13 12 11 37 37 H 1.08998 * 109.47251 * 186.04037 * 13 12 11 38 38 H 1.09007 * 109.46922 * 59.99765 * 14 13 12 39 39 H 1.09003 * 109.46836 * 300.00520 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08998 * 108.87877 * 79.09252 * 23 12 11 42 42 H 1.08997 * 108.88332 * 197.54898 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9466 0.7581 0.8806 7 6 4.0924 0.5885 -1.2360 8 7 5.3895 -0.0415 -0.9067 9 6 5.6550 -1.1893 -1.7842 10 6 6.4711 0.8474 -0.9022 11 6 6.3068 1.9551 0.1578 12 7 5.3954 2.9560 -0.3499 13 6 5.8540 4.3086 -0.0059 14 6 7.1644 4.6044 -0.7382 15 6 7.6352 5.9917 -0.3848 16 1 7.0578 6.6012 0.2945 17 6 8.8031 6.4828 -0.9288 18 7 9.5065 5.7403 -1.7556 19 14 9.3863 8.2026 -0.4913 20 1 10.6582 8.4898 -1.2020 21 1 8.3570 9.1927 -0.8979 22 1 9.6076 8.2923 0.9744 23 6 3.9889 2.7510 0.0651 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.2325 1.3214 -2.0305 28 1 3.3856 -0.1758 -1.5593 29 1 6.5795 -1.6770 -1.4748 30 1 4.8298 -1.8981 -1.7151 31 1 5.7528 -0.8448 -2.8136 32 1 6.5546 1.3086 -1.8864 33 1 7.3855 0.2916 -0.6947 34 1 7.2750 2.4125 0.3613 35 1 5.9047 1.5274 1.0763 36 1 6.0162 4.3745 1.0700 37 1 5.0987 5.0353 -0.3048 38 1 7.0022 4.5384 -1.8141 39 1 7.9197 3.8776 -0.4393 40 1 10.3279 6.0860 -2.1386 41 1 3.8675 3.1075 1.0880 42 1 3.3397 3.3333 -0.5887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595533570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = -70.125172 kcal Electronic energy + Delta-G solvation = -21682.152871 eV Core-core repulsion = 18469.670946 eV Total energy + Delta-G solvation = -3212.481925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83725 -39.06578 -36.68475 -36.07836 -33.48190 -32.65009 -30.00076 -28.61361 -27.75381 -26.07136 -24.82867 -24.23029 -22.12536 -20.83484 -20.14115 -19.37184 -17.80614 -16.93516 -16.59387 -16.28478 -15.54226 -15.25652 -15.08020 -14.63754 -14.30937 -13.96679 -13.63516 -13.42272 -13.34040 -12.88402 -12.42655 -12.21291 -12.14860 -11.95905 -11.58832 -11.47501 -11.22810 -11.02292 -10.97322 -10.89973 -10.70580 -10.55933 -10.50665 -10.34467 -9.82725 -9.38674 -9.12568 -8.32077 -8.14545 -7.63421 -5.98878 -4.01087 2.10386 2.53043 3.34540 3.38766 3.41394 4.03102 4.32641 4.50903 4.59144 4.90430 4.92321 4.96944 5.01185 5.18421 5.33061 5.35160 5.37002 5.40565 5.56197 5.61148 5.73497 5.80878 5.86305 5.87379 6.00547 6.13520 6.20623 6.27039 6.34958 6.43693 6.55329 6.97919 7.11090 7.40421 7.53228 7.64588 7.68053 7.81732 7.92500 8.09692 8.44288 9.05843 9.62453 11.12369 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.004232 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.306267 B = 6614.450731 C = 7514.728394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.504 6.504 5 C -0.077 4.077 6 H 0.117 0.883 7 C 0.077 3.923 8 N -0.554 5.554 9 C 0.032 3.968 10 C 0.071 3.929 11 C 0.059 3.941 12 N -0.551 5.551 13 C 0.068 3.932 14 C 0.030 3.970 15 C -0.523 4.523 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.075 3.925 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.036 0.964 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -15.428 2.321 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.391 6.391 5 C -0.097 4.097 6 H 0.135 0.865 7 C -0.050 4.050 8 N -0.278 5.278 9 C -0.115 4.115 10 C -0.059 4.059 11 C -0.070 4.070 12 N -0.276 5.276 13 C -0.058 4.058 14 C -0.007 4.007 15 C -0.562 4.562 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.053 4.053 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.312 -15.317 2.183 20.411 hybrid contribution 0.201 1.387 0.325 1.438 sum -13.111 -13.931 2.508 19.294 Atomic orbital electron populations 1.23256 0.76575 1.03541 1.02550 1.86521 1.23177 1.33501 1.84170 1.23754 0.91952 0.81199 0.71951 1.90672 1.67175 1.36293 1.44943 1.20964 0.86211 0.99382 1.03103 0.86512 1.21656 0.90920 0.97613 0.94808 1.59217 1.02947 1.11271 1.54415 1.22310 1.01925 0.92906 0.94400 1.21061 0.92317 0.93049 0.99475 1.22002 0.97867 0.92116 0.95035 1.60842 0.99967 1.04459 1.62372 1.22328 0.99935 0.85959 0.97550 1.19114 0.89584 0.95906 0.96139 1.21158 1.07329 1.00210 1.27475 0.92835 1.24982 0.96669 0.97494 0.95087 1.69961 1.15611 1.36784 1.30867 0.86660 0.77981 0.84849 0.78509 1.21302 1.20239 1.20296 1.22229 0.91040 0.92171 0.99872 0.88182 0.91964 0.91912 0.91854 0.90404 0.91406 0.91642 0.95570 0.94368 0.91128 0.89257 0.94174 0.96035 0.92091 0.95795 0.96362 0.92967 0.94571 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.04 10.05 -39.24 -0.39 -4.43 16 3 C 0.47 6.25 7.12 36.01 0.26 6.50 16 4 O -0.50 -7.97 15.29 -18.75 -0.29 -8.26 16 5 C -0.08 -1.02 2.15 -92.52 -0.20 -1.22 16 6 H 0.12 1.51 7.23 -51.93 -0.38 1.13 16 7 C 0.08 1.00 4.83 -4.37 -0.02 0.98 16 8 N -0.55 -7.16 4.32 -248.08 -1.07 -8.23 16 9 C 0.03 0.34 9.46 60.06 0.57 0.91 16 10 C 0.07 1.06 5.04 -6.76 -0.03 1.02 16 11 C 0.06 0.97 5.15 -4.45 -0.02 0.95 16 12 N -0.55 -9.96 3.94 -234.31 -0.92 -10.89 16 13 C 0.07 1.45 4.77 -3.82 -0.02 1.43 16 14 C 0.03 0.77 4.94 -27.89 -0.14 0.63 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 1.18 4.39 -2.82 -0.01 1.17 16 24 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.06 0.93 7.57 -51.93 -0.39 0.54 16 28 H 0.08 0.88 6.96 -51.93 -0.36 0.52 16 29 H 0.07 0.65 7.98 -51.93 -0.41 0.24 16 30 H 0.06 0.59 7.97 -51.93 -0.41 0.18 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 34 H 0.09 1.66 5.85 -51.93 -0.30 1.35 16 35 H 0.04 0.62 6.94 -51.93 -0.36 0.26 16 36 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 38 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.02 0.49 6.38 -51.93 -0.33 0.16 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.04 0.58 8.03 -51.93 -0.42 0.16 16 42 H 0.08 1.41 7.30 -51.93 -0.38 1.04 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -31.12 331.79 -8.00 -39.12 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.07 Total: -3.21 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 1.03 Total: 0.22 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.26 Total: -45.11 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.68 Total: -12.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.12 -8.00 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.007 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds