Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00031 * 2 1 4 4 O 1.20825 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00131 * 180.02562 * 3 2 1 6 6 H 1.09001 * 108.85985 * 301.29109 * 5 3 2 7 7 C 1.50796 * 108.95582 * 59.99448 * 5 3 2 8 8 N 1.47915 * 108.50481 * 213.22442 * 7 5 3 9 9 C 1.46900 * 110.99852 * 153.79177 * 8 7 5 10 10 C 1.40003 * 114.06589 * 280.07854 * 8 7 5 11 11 C 1.54199 * 112.08462 * 61.80680 * 10 8 7 12 12 N 1.44571 * 108.85322 * 281.18368 * 11 10 8 13 13 C 1.46902 * 111.00050 * 220.34864 * 12 11 10 14 14 C 1.53001 * 109.47217 * 66.04249 * 13 12 11 15 15 C 1.50694 * 109.47168 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.48070 * 113.86196 * 94.22360 * 12 11 10 24 24 H 1.09007 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47291 * 299.99973 * 1 2 3 26 26 H 1.09006 * 109.47039 * 60.00660 * 1 2 3 27 27 H 1.09001 * 109.63110 * 93.52176 * 7 5 3 28 28 H 1.09002 * 109.63290 * 332.92912 * 7 5 3 29 29 H 1.09005 * 109.47130 * 184.01655 * 9 8 7 30 30 H 1.09004 * 109.47283 * 304.01031 * 9 8 7 31 31 H 1.08996 * 109.47187 * 64.01210 * 9 8 7 32 32 H 1.09004 * 108.96198 * 301.13668 * 10 8 7 33 33 H 1.08999 * 108.96492 * 182.47842 * 10 8 7 34 34 H 1.09001 * 109.58092 * 161.36753 * 11 10 8 35 35 H 1.09007 * 109.67480 * 41.05213 * 11 10 8 36 36 H 1.09002 * 109.46978 * 306.04519 * 13 12 11 37 37 H 1.08998 * 109.47251 * 186.04037 * 13 12 11 38 38 H 1.09007 * 109.46922 * 59.99765 * 14 13 12 39 39 H 1.09003 * 109.46836 * 300.00520 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.08998 * 108.87877 * 79.09252 * 23 12 11 42 42 H 1.08997 * 108.88332 * 197.54898 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9466 0.7581 0.8806 7 6 4.0924 0.5885 -1.2360 8 7 5.3895 -0.0415 -0.9067 9 6 5.6550 -1.1893 -1.7842 10 6 6.4711 0.8474 -0.9022 11 6 6.3068 1.9551 0.1578 12 7 5.3954 2.9560 -0.3499 13 6 5.8540 4.3086 -0.0059 14 6 7.1644 4.6044 -0.7382 15 6 7.6352 5.9917 -0.3848 16 1 7.0578 6.6012 0.2945 17 6 8.8031 6.4828 -0.9288 18 7 9.5065 5.7403 -1.7556 19 14 9.3863 8.2026 -0.4913 20 1 10.6582 8.4898 -1.2020 21 1 8.3570 9.1927 -0.8979 22 1 9.6076 8.2923 0.9744 23 6 3.9889 2.7510 0.0651 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.2325 1.3214 -2.0305 28 1 3.3856 -0.1758 -1.5593 29 1 6.5795 -1.6770 -1.4748 30 1 4.8298 -1.8981 -1.7151 31 1 5.7528 -0.8448 -2.8136 32 1 6.5546 1.3086 -1.8864 33 1 7.3855 0.2916 -0.6947 34 1 7.2750 2.4125 0.3613 35 1 5.9047 1.5274 1.0763 36 1 6.0162 4.3745 1.0700 37 1 5.0987 5.0353 -0.3048 38 1 7.0022 4.5384 -1.8141 39 1 7.9197 3.8776 -0.4393 40 1 10.3279 6.0860 -2.1386 41 1 3.8675 3.1075 1.0880 42 1 3.3397 3.3333 -0.5887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595533570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = -91.093885 kcal Electronic energy + Delta-G solvation = -21683.062142 eV Core-core repulsion = 18469.670946 eV Total energy + Delta-G solvation = -3213.391196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89596 -40.25441 -37.71858 -37.43174 -35.23485 -34.19555 -31.76087 -29.90039 -28.60205 -27.43500 -25.99411 -25.90516 -23.48999 -22.20193 -21.56766 -20.65161 -18.93292 -18.48290 -17.88759 -17.53376 -16.81450 -16.48166 -16.42473 -16.22999 -15.71332 -15.35069 -14.93179 -14.53475 -14.49890 -14.19687 -14.04485 -13.46172 -13.29750 -13.07393 -12.96748 -12.90459 -12.65186 -12.56033 -12.49741 -12.31974 -11.93244 -11.88102 -11.77014 -11.74057 -11.46631 -11.33560 -11.21711 -10.52096 -9.23676 -9.11432 -8.19050 -6.29937 1.06226 1.40693 1.43685 1.51411 1.58814 2.40937 2.92426 3.08443 3.14356 3.43874 3.82485 3.90092 4.11332 4.22544 4.23985 4.34010 4.34939 4.40279 4.46197 4.52958 4.56561 4.70036 4.72583 4.73411 4.79489 4.80062 4.98216 4.99201 5.09103 5.09463 5.14778 5.29909 5.45768 5.69613 5.77677 6.06082 6.11593 6.26184 6.37481 6.42884 6.65156 6.86414 7.38734 8.92644 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.004232 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.306267 B = 6614.450731 C = 7514.728394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.478 3.522 4 O -0.534 6.534 5 C -0.068 4.068 6 H 0.129 0.871 7 C 0.082 3.918 8 N -0.553 5.553 9 C 0.031 3.969 10 C 0.082 3.918 11 C 0.060 3.940 12 N -0.559 5.559 13 C 0.085 3.915 14 C 0.041 3.959 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.282 1.282 21 H -0.269 1.269 22 H -0.267 1.267 23 C 0.079 3.921 24 H 0.135 0.865 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.009 0.991 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.057 0.943 38 H -0.010 1.010 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.038 0.962 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -16.525 3.178 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.321 3.679 4 O -0.423 6.423 5 C -0.088 4.088 6 H 0.146 0.854 7 C -0.046 4.046 8 N -0.277 5.277 9 C -0.116 4.116 10 C -0.048 4.048 11 C -0.068 4.068 12 N -0.284 5.284 13 C -0.042 4.042 14 C 0.004 3.996 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.207 1.207 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.049 4.049 24 H 0.153 0.847 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.008 0.992 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.267 -16.453 3.044 21.989 hybrid contribution 0.434 1.637 0.033 1.693 sum -13.833 -14.816 3.078 20.502 Atomic orbital electron populations 1.23595 0.74569 1.05884 1.02547 1.86500 1.25041 1.31963 1.83496 1.23579 0.91697 0.81409 0.71217 1.90669 1.67731 1.37402 1.46500 1.20815 0.86745 0.97409 1.03858 0.85353 1.21634 0.91420 0.97704 0.93830 1.59247 1.02178 1.11142 1.55113 1.22415 1.03436 0.92119 0.93626 1.20889 0.93834 0.92848 0.97222 1.21988 0.96320 0.92089 0.96429 1.60732 1.01435 1.03244 1.63012 1.21943 0.97514 0.87910 0.96842 1.18912 0.91480 0.94881 0.94370 1.21593 1.07848 1.01356 1.27738 0.92370 1.25917 0.96747 1.01958 0.94789 1.70096 1.16069 1.38875 1.31844 0.85519 0.77556 0.79370 0.78696 1.20748 1.19393 1.19138 1.22152 0.89080 0.94228 0.99420 0.84676 0.91987 0.91999 0.94075 0.88153 0.90359 0.89483 0.95998 0.97235 0.89801 0.91729 0.92429 0.95736 0.92490 0.99190 0.98040 0.92757 0.94420 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.10 10.05 -51.35 -0.52 -7.61 16 3 C 0.48 12.00 7.12 71.24 0.51 12.50 16 4 O -0.53 -16.50 15.29 21.97 0.34 -16.17 16 5 C -0.07 -1.73 2.15 -12.02 -0.03 -1.76 16 6 H 0.13 3.01 7.23 -2.39 -0.02 2.99 16 7 C 0.08 1.99 4.83 85.39 0.41 2.40 16 8 N -0.55 -13.36 4.32 -938.78 -4.06 -17.42 16 9 C 0.03 0.58 9.46 127.69 1.21 1.78 16 10 C 0.08 2.44 5.04 87.95 0.44 2.88 16 11 C 0.06 2.02 5.15 87.15 0.45 2.47 16 12 N -0.56 -20.64 3.94 -895.22 -3.53 -24.18 16 13 C 0.08 3.70 4.77 86.30 0.41 4.11 16 14 C 0.04 2.20 4.94 29.85 0.15 2.35 16 15 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.08 2.48 4.39 86.31 0.38 2.86 16 24 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 26 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 27 H 0.04 1.20 7.57 -2.39 -0.02 1.18 16 28 H 0.10 2.01 6.96 -2.39 -0.02 1.99 16 29 H 0.08 1.31 7.98 -2.38 -0.02 1.29 16 30 H 0.09 1.27 7.97 -2.38 -0.02 1.25 16 31 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 33 H 0.08 2.25 7.90 -2.39 -0.02 2.23 16 34 H 0.06 2.48 5.85 -2.39 -0.01 2.47 16 35 H 0.06 1.72 6.94 -2.38 -0.02 1.70 16 36 H 0.02 1.04 8.12 -2.39 -0.02 1.03 16 37 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 38 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.00 0.08 6.38 -2.39 -0.02 0.06 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.04 1.18 8.03 -2.39 -0.02 1.16 16 42 H 0.07 2.41 7.30 -2.39 -0.02 2.39 16 Total: -1.00 -67.96 331.79 1.35 -66.62 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.98 Total: 8.06 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.82 Total: 0.55 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -7.30 Total: -98.10 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.18 Total: -23.78 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.96 1.35 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595533570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.475 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds