Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00198 * 2 1 4 4 C 1.53004 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46551 * 64.99887 * 4 3 2 6 6 C 1.37092 * 120.00170 * 267.20583 * 5 4 3 7 7 H 1.08002 * 120.00021 * 139.62772 * 6 5 4 8 8 C 1.38955 * 120.00361 * 319.62599 * 6 5 4 9 9 N 1.31408 * 119.99374 * 345.15603 * 8 6 5 10 10 Si 1.86792 * 120.00009 * 165.15569 * 8 6 5 11 11 H 1.48499 * 109.47417 * 5.01331 * 10 8 6 12 12 H 1.48505 * 109.47089 * 125.01266 * 10 8 6 13 13 H 1.48493 * 109.47220 * 245.00737 * 10 8 6 14 14 C 1.34783 * 119.99611 * 87.21259 * 5 4 3 15 15 O 1.21289 * 119.99832 * 355.36655 * 14 5 4 16 16 C 1.50703 * 119.99767 * 175.63794 * 14 5 4 17 17 C 1.53003 * 115.54619 * 68.24516 * 16 14 5 18 18 N 1.46895 * 109.47386 * 54.24610 * 17 16 14 19 19 C 1.46903 * 111.00022 * 76.96653 * 18 17 16 20 20 C 1.46896 * 111.00092 * 200.92144 * 18 17 16 21 21 C 1.52995 * 117.50056 * 282.57341 * 16 14 5 22 22 C 1.52998 * 117.49698 * 213.91132 * 16 14 5 23 23 H 1.09003 * 109.46713 * 59.99891 * 1 2 3 24 24 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00427 * 1 2 3 26 26 H 1.09001 * 109.46826 * 60.00191 * 3 2 1 27 27 H 1.08996 * 109.47478 * 300.00077 * 3 2 1 28 28 H 1.09004 * 109.47005 * 305.00653 * 4 3 2 29 29 H 1.08994 * 109.47376 * 184.99839 * 4 3 2 30 30 H 0.97006 * 119.99979 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.46934 * 174.24703 * 17 16 14 32 32 H 1.08999 * 109.47108 * 294.24361 * 17 16 14 33 33 H 1.09001 * 109.46799 * 59.22041 * 19 18 17 34 34 H 1.08995 * 109.47274 * 179.21858 * 19 18 17 35 35 H 1.09004 * 109.47361 * 299.21923 * 19 18 17 36 36 H 1.09001 * 109.47263 * 64.38835 * 20 18 17 37 37 H 1.09006 * 109.47348 * 184.38175 * 20 18 17 38 38 H 1.08995 * 109.47318 * 304.38353 * 20 18 17 39 39 H 1.09000 * 117.49921 * 0.02562 * 21 16 14 40 40 H 1.08995 * 117.50140 * 145.01841 * 21 16 14 41 41 H 1.09000 * 117.49314 * 214.97797 * 22 16 14 42 42 H 1.08996 * 117.49846 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1531 -0.7939 -1.3177 7 1 3.8398 -1.3366 -2.1974 8 6 4.7349 -1.4722 -0.2536 9 7 5.3759 -0.8047 0.6793 10 14 4.6058 -3.3328 -0.1494 11 1 3.9456 -3.8526 -1.3738 12 1 5.9660 -3.9176 -0.0342 13 1 3.8036 -3.7073 1.0427 14 6 4.2092 1.3280 -2.3367 15 8 3.9732 2.5172 -2.3031 16 6 4.7566 0.7035 -3.5942 17 6 3.8072 -0.2473 -4.3261 18 7 2.5385 0.4411 -4.5984 19 6 2.6739 1.3654 -5.7321 20 6 1.4556 -0.5236 -4.8321 21 6 6.2503 0.3741 -3.6270 22 6 5.7068 1.5474 -4.4462 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8509 0.5684 0.8427 29 1 3.9786 2.1765 0.0902 30 1 5.7824 -1.2781 1.4219 31 1 4.2601 -0.5600 -5.2669 32 1 3.6194 -1.1228 -3.7046 33 1 2.9807 0.8104 -6.6187 34 1 1.7167 1.8514 -5.9210 35 1 3.4246 2.1202 -5.4980 36 1 1.2782 -1.0979 -3.9228 37 1 0.5462 0.0106 -5.1076 38 1 1.7388 -1.1992 -5.6392 39 1 6.8371 0.6086 -2.7388 40 1 6.5568 -0.5198 -4.1702 41 1 5.6558 1.4248 -5.5281 42 1 5.9356 2.5543 -4.0974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602157314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -31.647489 kcal Electronic energy + Delta-G solvation = -22983.917739 eV Core-core repulsion = 19773.104332 eV Total energy + Delta-G solvation = -3210.813407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20727 -37.30838 -36.49487 -35.07455 -34.37960 -31.39254 -29.20116 -27.36040 -27.18432 -25.69533 -24.67123 -22.99839 -21.71843 -21.64328 -20.46305 -18.49869 -16.82644 -15.95284 -15.38787 -15.19417 -14.88870 -14.73258 -14.53308 -14.22268 -14.05873 -13.96833 -13.54535 -13.10645 -12.49877 -12.15586 -11.88108 -11.87343 -11.55412 -11.47113 -11.29192 -11.14263 -11.04793 -10.94276 -10.88876 -10.79219 -10.43515 -10.23102 -9.86620 -9.59389 -9.19239 -8.95459 -8.81585 -8.25124 -7.82525 -7.26757 -6.16310 -3.87517 3.22494 3.32489 3.33966 4.02848 4.18904 4.32582 4.61173 4.66857 4.93438 5.20348 5.42676 5.46166 5.54428 5.64535 5.75329 5.76944 5.83243 5.84546 5.89915 5.94759 6.08809 6.13281 6.18151 6.21355 6.24207 6.28597 6.34990 6.44185 6.52395 6.62724 6.71543 6.80938 6.96176 7.43687 7.48961 7.51555 7.69432 7.98956 8.19302 8.58261 9.30113 9.74369 10.15842 10.86473 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.009314 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.243388 B = 3005.606206 C = 3511.223375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.116 3.884 5 N -0.427 5.427 6 C -0.303 4.303 7 H 0.088 0.912 8 C 0.044 3.956 9 N -0.873 5.873 10 Si 0.911 3.089 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.281 1.281 14 C 0.526 3.474 15 O -0.606 6.606 16 C -0.104 4.104 17 C 0.095 3.905 18 N -0.535 5.535 19 C 0.029 3.971 20 C 0.029 3.971 21 C -0.146 4.146 22 C -0.169 4.169 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.030 0.970 32 H 0.096 0.904 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -0.695 -6.756 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.144 5.144 6 C -0.432 4.432 7 H 0.105 0.895 8 C -0.160 4.160 9 N -0.511 5.511 10 Si 0.739 3.261 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.207 1.207 14 C 0.315 3.685 15 O -0.492 6.492 16 C -0.107 4.107 17 C -0.033 4.033 18 N -0.258 5.258 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.184 4.184 22 C -0.207 4.207 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.568 -0.064 -6.113 7.631 hybrid contribution -0.191 -1.302 -0.527 1.417 sum -4.759 -1.366 -6.640 8.282 Atomic orbital electron populations 1.22607 0.83755 1.01440 0.98695 1.88129 1.17059 1.27822 1.95000 1.23019 0.96745 0.84190 0.98374 1.21435 0.89066 0.98634 0.91626 1.43129 1.56673 1.06492 1.08081 1.19415 1.37822 0.81553 1.04386 0.89520 1.25295 0.94493 0.99346 0.96818 1.69833 1.32608 1.35929 1.12735 0.86130 0.77448 0.83979 0.78554 1.19539 1.21264 1.20728 1.19130 0.79790 0.85266 0.84317 1.90479 1.57805 1.16286 1.84596 1.20941 0.91491 1.01193 0.97095 1.21777 0.88147 0.96005 0.97366 1.61729 1.05551 1.18965 1.39594 1.22402 1.02079 0.96789 0.90661 1.22351 0.94327 0.94873 1.00375 1.22813 0.95184 0.98433 1.01929 1.22969 1.04112 0.96842 0.96729 0.95021 0.90684 0.95437 0.94873 0.93913 0.86810 0.91793 0.92513 0.95230 0.88607 0.96689 0.92290 0.90721 0.91067 0.92101 0.96446 0.88389 0.89257 0.89673 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.97 10.31 -35.23 -0.36 -8.33 16 3 C 0.05 1.19 6.27 37.16 0.23 1.42 16 4 C 0.12 2.86 5.30 -4.04 -0.02 2.84 16 5 N -0.43 -10.81 2.48 -114.80 -0.28 -11.10 16 6 C -0.30 -7.67 8.08 -14.93 -0.12 -7.79 16 7 H 0.09 2.15 4.70 -52.49 -0.25 1.90 16 8 C 0.04 1.13 5.07 -17.47 -0.09 1.04 16 9 N -0.87 -23.19 11.30 55.50 0.63 -22.57 16 10 Si 0.91 20.16 29.58 -169.99 -5.03 15.13 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.53 13.04 6.55 -10.98 -0.07 12.97 16 15 O -0.61 -16.40 16.45 5.55 0.09 -16.31 16 16 C -0.10 -2.14 0.94 -155.66 -0.15 -2.28 16 17 C 0.09 1.76 4.65 -3.83 -0.02 1.74 16 18 N -0.54 -9.65 4.62 -251.27 -1.16 -10.81 16 19 C 0.03 0.45 9.34 60.07 0.56 1.01 16 20 C 0.03 0.44 9.51 60.06 0.57 1.01 16 21 C -0.15 -2.73 9.90 -26.70 -0.26 -3.00 16 22 C -0.17 -3.03 8.48 -26.69 -0.23 -3.26 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.11 2.99 5.51 -51.93 -0.29 2.70 16 29 H 0.06 1.59 7.58 -51.93 -0.39 1.20 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.03 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.10 1.91 5.05 -51.93 -0.26 1.65 16 33 H 0.01 0.20 8.06 -51.93 -0.42 -0.22 16 34 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.07 1.26 6.59 -51.93 -0.34 0.92 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 38 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 39 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 42 H 0.09 1.80 8.05 -51.93 -0.42 1.38 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -29.90 340.32 -6.44 -36.34 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.97 Total: 5.14 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 1.52 Total: 7.38 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.82 Total: -44.48 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.27 Total: -24.64 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.90 -6.44 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds