Wall clock time and date at job start Mon Mar 30 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00198 * 2 1 4 4 C 1.53004 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46551 * 64.99887 * 4 3 2 6 6 C 1.37092 * 120.00170 * 267.20583 * 5 4 3 7 7 H 1.08002 * 120.00021 * 139.62772 * 6 5 4 8 8 C 1.38955 * 120.00361 * 319.62599 * 6 5 4 9 9 N 1.31408 * 119.99374 * 345.15603 * 8 6 5 10 10 Si 1.86792 * 120.00009 * 165.15569 * 8 6 5 11 11 H 1.48499 * 109.47417 * 5.01331 * 10 8 6 12 12 H 1.48505 * 109.47089 * 125.01266 * 10 8 6 13 13 H 1.48493 * 109.47220 * 245.00737 * 10 8 6 14 14 C 1.34783 * 119.99611 * 87.21259 * 5 4 3 15 15 O 1.21289 * 119.99832 * 355.36655 * 14 5 4 16 16 C 1.50703 * 119.99767 * 175.63794 * 14 5 4 17 17 C 1.53003 * 115.54619 * 68.24516 * 16 14 5 18 18 N 1.46895 * 109.47386 * 54.24610 * 17 16 14 19 19 C 1.46903 * 111.00022 * 76.96653 * 18 17 16 20 20 C 1.46896 * 111.00092 * 200.92144 * 18 17 16 21 21 C 1.52995 * 117.50056 * 282.57341 * 16 14 5 22 22 C 1.52998 * 117.49698 * 213.91132 * 16 14 5 23 23 H 1.09003 * 109.46713 * 59.99891 * 1 2 3 24 24 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00427 * 1 2 3 26 26 H 1.09001 * 109.46826 * 60.00191 * 3 2 1 27 27 H 1.08996 * 109.47478 * 300.00077 * 3 2 1 28 28 H 1.09004 * 109.47005 * 305.00653 * 4 3 2 29 29 H 1.08994 * 109.47376 * 184.99839 * 4 3 2 30 30 H 0.97006 * 119.99979 * 180.02562 * 9 8 6 31 31 H 1.08996 * 109.46934 * 174.24703 * 17 16 14 32 32 H 1.08999 * 109.47108 * 294.24361 * 17 16 14 33 33 H 1.09001 * 109.46799 * 59.22041 * 19 18 17 34 34 H 1.08995 * 109.47274 * 179.21858 * 19 18 17 35 35 H 1.09004 * 109.47361 * 299.21923 * 19 18 17 36 36 H 1.09001 * 109.47263 * 64.38835 * 20 18 17 37 37 H 1.09006 * 109.47348 * 184.38175 * 20 18 17 38 38 H 1.08995 * 109.47318 * 304.38353 * 20 18 17 39 39 H 1.09000 * 117.49921 * 0.02562 * 21 16 14 40 40 H 1.08995 * 117.50140 * 145.01841 * 21 16 14 41 41 H 1.09000 * 117.49314 * 214.97797 * 22 16 14 42 42 H 1.08996 * 117.49846 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1531 -0.7939 -1.3177 7 1 3.8398 -1.3366 -2.1974 8 6 4.7349 -1.4722 -0.2536 9 7 5.3759 -0.8047 0.6793 10 14 4.6058 -3.3328 -0.1494 11 1 3.9456 -3.8526 -1.3738 12 1 5.9660 -3.9176 -0.0342 13 1 3.8036 -3.7073 1.0427 14 6 4.2092 1.3280 -2.3367 15 8 3.9732 2.5172 -2.3031 16 6 4.7566 0.7035 -3.5942 17 6 3.8072 -0.2473 -4.3261 18 7 2.5385 0.4411 -4.5984 19 6 2.6739 1.3654 -5.7321 20 6 1.4556 -0.5236 -4.8321 21 6 6.2503 0.3741 -3.6270 22 6 5.7068 1.5474 -4.4462 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8509 0.5684 0.8427 29 1 3.9786 2.1765 0.0902 30 1 5.7824 -1.2781 1.4219 31 1 4.2601 -0.5600 -5.2669 32 1 3.6194 -1.1228 -3.7046 33 1 2.9807 0.8104 -6.6187 34 1 1.7167 1.8514 -5.9210 35 1 3.4246 2.1202 -5.4980 36 1 1.2782 -1.0979 -3.9228 37 1 0.5462 0.0106 -5.1076 38 1 1.7388 -1.1992 -5.6392 39 1 6.8371 0.6086 -2.7388 40 1 6.5568 -0.5198 -4.1702 41 1 5.6558 1.4248 -5.5281 42 1 5.9356 2.5543 -4.0974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602157314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:16 Heat of formation + Delta-G solvation = -51.503535 kcal Electronic energy + Delta-G solvation = -22984.778762 eV Core-core repulsion = 19773.104332 eV Total energy + Delta-G solvation = -3211.674430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94058 -38.91473 -38.09604 -36.64145 -36.23679 -33.35049 -30.98496 -28.75087 -28.37310 -27.20581 -26.58401 -24.68338 -23.19463 -23.05395 -22.19208 -20.36727 -18.59815 -17.65308 -17.09197 -16.83551 -16.36753 -16.32734 -16.08012 -15.87725 -15.72498 -15.48188 -15.03619 -14.70426 -14.22301 -13.61496 -13.45386 -13.32749 -13.01762 -12.98684 -12.85821 -12.72007 -12.70009 -12.53177 -12.49475 -12.27906 -12.12869 -11.97665 -11.65332 -11.13240 -10.87771 -10.70070 -10.47352 -10.13327 -9.24657 -9.10163 -8.10612 -5.86670 1.46361 1.52458 1.61731 2.19933 2.40954 2.78832 3.04000 3.16186 3.28613 3.31938 3.97452 4.05699 4.19978 4.29003 4.32006 4.37250 4.48140 4.52185 4.58435 4.62053 4.62982 4.67207 4.70556 4.78355 4.79868 4.82579 4.88220 4.96457 5.04141 5.10287 5.11980 5.23985 5.33110 5.45287 5.73222 6.18567 6.20931 6.30326 6.47020 6.62277 7.34004 7.81119 8.22801 8.92974 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013905 B = 0.009314 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.243388 B = 3005.606206 C = 3511.223375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.070 3.930 4 C 0.113 3.887 5 N -0.436 5.436 6 C -0.305 4.305 7 H 0.094 0.906 8 C 0.003 3.997 9 N -0.904 5.904 10 Si 0.970 3.030 11 H -0.258 1.258 12 H -0.284 1.284 13 H -0.287 1.287 14 C 0.515 3.485 15 O -0.640 6.640 16 C -0.125 4.125 17 C 0.105 3.895 18 N -0.567 5.567 19 C 0.033 3.967 20 C 0.033 3.967 21 C -0.142 4.142 22 C -0.147 4.147 23 H 0.036 0.964 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -2.154 -8.568 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.311 6.311 3 C -0.008 4.008 4 C -0.011 4.011 5 N -0.152 5.152 6 C -0.433 4.433 7 H 0.111 0.889 8 C -0.198 4.198 9 N -0.544 5.544 10 Si 0.796 3.204 11 H -0.181 1.181 12 H -0.210 1.210 13 H -0.213 1.213 14 C 0.305 3.695 15 O -0.528 6.528 16 C -0.129 4.129 17 C -0.023 4.023 18 N -0.291 5.291 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.180 4.180 22 C -0.184 4.184 23 H 0.055 0.945 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.403 -1.533 -7.937 9.723 hybrid contribution 0.020 -0.778 0.070 0.781 sum -5.383 -2.310 -7.867 9.808 Atomic orbital electron populations 1.22844 0.80912 1.03176 0.99949 1.88059 1.20185 1.27579 1.95231 1.22729 0.94791 0.84564 0.98717 1.21354 0.91203 0.97241 0.91297 1.43342 1.56724 1.06854 1.08310 1.19641 1.37442 0.81561 1.04682 0.88890 1.26016 0.94152 1.03132 0.96451 1.69950 1.33604 1.37451 1.13349 0.85211 0.77336 0.79262 0.78590 1.18123 1.20980 1.21329 1.19864 0.79156 0.84997 0.85483 1.90436 1.59215 1.17773 1.85424 1.20972 0.92678 1.03046 0.96172 1.21611 0.88302 0.94544 0.97818 1.61662 1.05865 1.20157 1.41440 1.22362 1.02244 0.96217 0.90668 1.22313 0.94124 0.94760 1.00240 1.22832 0.93533 1.00123 1.01483 1.22999 1.01588 0.95514 0.98310 0.94513 0.88763 0.93332 0.92351 0.95520 0.88549 0.93439 0.92588 0.92428 0.90466 0.94277 0.91317 0.92457 0.92778 0.90708 0.94420 0.91141 0.86252 0.86088 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -17.08 10.31 -148.98 -1.54 -18.62 16 3 C 0.07 3.08 6.27 71.98 0.45 3.53 16 4 C 0.11 5.77 5.30 86.38 0.46 6.23 16 5 N -0.44 -22.58 2.48 -635.51 -1.57 -24.15 16 6 C -0.31 -15.49 8.08 84.04 0.68 -14.81 16 7 H 0.09 4.57 4.70 -2.91 -0.01 4.55 16 8 C 0.00 0.16 5.07 84.93 0.43 0.60 16 9 N -0.90 -49.03 11.30 21.66 0.24 -48.79 16 10 Si 0.97 40.99 29.58 68.60 2.03 43.02 16 11 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 14 C 0.51 26.00 6.55 87.66 0.57 26.57 16 15 O -0.64 -35.74 16.45 -3.06 -0.05 -35.79 16 16 C -0.13 -5.06 0.94 -52.93 -0.05 -5.11 16 17 C 0.10 3.69 4.65 86.31 0.40 4.09 16 18 N -0.57 -19.41 4.62 -948.87 -4.38 -23.79 16 19 C 0.03 0.94 9.34 127.69 1.19 2.13 16 20 C 0.03 0.94 9.51 127.69 1.21 2.16 16 21 C -0.14 -5.16 9.90 30.62 0.30 -4.86 16 22 C -0.15 -5.03 8.48 30.62 0.26 -4.77 16 23 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 5.26 5.51 -2.38 -0.01 5.25 16 29 H 0.05 2.49 7.58 -2.39 -0.02 2.48 16 30 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 31 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 32 H 0.08 2.97 5.05 -2.39 -0.01 2.96 16 33 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 35 H 0.06 1.82 6.59 -2.39 -0.02 1.81 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 38 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 41 H 0.12 3.26 8.09 -2.39 -0.02 3.25 16 42 H 0.08 2.92 8.05 -2.39 -0.02 2.90 16 Total: -1.00 -65.62 340.32 2.88 -62.74 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.99 Total: 27.50 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 7.16 Total: 17.87 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -5.71 Total: -96.72 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -1.59 Total: -54.40 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -65.62 2.88 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.233 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds