Wall clock time and date at job start Mon Mar 30 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47148 * 67.19844 * 4 3 2 6 6 C 1.37103 * 119.99942 * 95.67439 * 5 4 3 7 7 H 1.07997 * 120.00107 * 225.62859 * 6 5 4 8 8 C 1.38946 * 119.99701 * 45.63644 * 6 5 4 9 9 N 1.31418 * 119.99698 * 208.53892 * 8 6 5 10 10 Si 1.86799 * 120.00309 * 28.81504 * 8 6 5 11 11 H 1.48503 * 109.47354 * 174.31179 * 10 8 6 12 12 H 1.48496 * 109.47013 * 294.31115 * 10 8 6 13 13 H 1.48498 * 109.47046 * 54.31418 * 10 8 6 14 14 C 1.34779 * 120.00136 * 275.67895 * 5 4 3 15 15 O 1.21292 * 119.99814 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00287 * 180.02562 * 14 5 4 17 17 H 1.08993 * 109.46380 * 40.01167 * 16 14 5 18 18 C 1.53042 * 109.45661 * 280.05132 * 16 14 5 19 19 C 1.53121 * 109.27713 * 180.80479 * 18 16 14 20 20 C 1.53124 * 109.16225 * 57.65101 * 19 18 16 21 21 C 1.53036 * 109.27855 * 302.34977 * 20 19 18 22 22 N 1.46839 * 109.46501 * 159.99948 * 16 14 5 23 23 C 1.46902 * 110.99726 * 305.84982 * 22 16 14 24 24 H 1.09000 * 109.46645 * 299.99486 * 1 2 3 25 25 H 1.08995 * 109.47740 * 59.99690 * 1 2 3 26 26 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47050 * 60.00742 * 3 2 1 28 28 H 1.09001 * 109.47493 * 300.00836 * 3 2 1 29 29 H 1.09003 * 109.46934 * 307.20115 * 4 3 2 30 30 H 1.09003 * 109.47454 * 187.19852 * 4 3 2 31 31 H 0.97006 * 119.99793 * 0.27480 * 9 8 6 32 32 H 1.09002 * 109.50178 * 300.74248 * 18 16 14 33 33 H 1.08991 * 109.50620 * 60.86394 * 18 16 14 34 34 H 1.09000 * 109.52111 * 297.75061 * 19 18 16 35 35 H 1.09001 * 109.57481 * 177.58396 * 19 18 16 36 36 H 1.08996 * 109.50487 * 182.40558 * 20 19 18 37 37 H 1.09007 * 109.53282 * 62.30459 * 20 19 18 38 38 H 1.09008 * 109.45961 * 299.16232 * 21 20 19 39 39 H 1.09000 * 109.45233 * 179.19082 * 21 20 19 40 40 H 1.08998 * 109.47068 * 60.00436 * 23 22 16 41 41 H 1.09005 * 109.46956 * 179.97438 * 23 22 16 42 42 H 1.08997 * 109.47048 * 299.99754 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9795 0.6128 -1.2742 6 6 4.3846 1.4374 -2.2918 7 1 4.0341 1.2649 -3.2987 8 6 5.2462 2.4950 -2.0277 9 7 5.2103 3.5744 -2.7764 10 14 6.4607 2.3795 -0.6131 11 1 7.3513 3.5677 -0.6271 12 1 5.7197 2.3314 0.6728 13 1 7.2767 1.1476 -0.7607 14 6 3.9896 -0.7241 -1.4455 15 8 3.6316 -1.4536 -0.5451 16 6 4.4469 -1.3124 -2.7553 17 1 5.3081 -0.7546 -3.1231 18 6 3.3105 -1.2273 -3.7769 19 6 3.7727 -1.8442 -5.0999 20 6 4.2046 -3.2928 -4.8552 21 6 5.3150 -3.3180 -3.8024 22 7 4.8231 -2.7177 -2.5557 23 6 5.8155 -2.8494 -1.4806 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8489 0.5364 0.8177 30 1 3.9782 2.1723 0.1281 31 1 4.5796 3.6344 -3.5110 32 1 2.4441 -1.7734 -3.4037 33 1 3.0421 -0.1830 -3.9365 34 1 4.6148 -1.2746 -5.4929 35 1 2.9529 -1.8249 -5.8179 36 1 4.5749 -3.7241 -5.7851 37 1 3.3525 -3.8720 -4.4992 38 1 6.1723 -2.7507 -4.1651 39 1 5.6147 -4.3492 -3.6155 40 1 5.3970 -2.4642 -0.5508 41 1 6.0761 -3.9002 -1.3535 42 1 6.7092 -2.2818 -1.7396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602158692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:21 Heat of formation + Delta-G solvation = -69.375440 kcal Electronic energy + Delta-G solvation = -22978.674469 eV Core-core repulsion = 19766.225055 eV Total energy + Delta-G solvation = -3212.449414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53022 -37.72355 -36.67505 -34.76456 -32.94832 -31.98510 -30.88833 -28.97603 -26.36858 -25.77187 -24.33691 -23.37926 -22.53278 -21.68256 -19.53587 -18.78722 -17.44691 -16.20164 -15.80748 -15.37253 -15.20455 -14.78505 -14.58832 -14.17258 -13.98840 -13.82447 -13.59526 -13.14924 -13.10500 -12.58330 -12.31799 -12.08550 -11.94419 -11.55217 -11.44215 -11.24468 -11.05335 -10.77305 -10.68079 -10.47198 -10.36113 -10.17944 -10.07773 -9.97123 -9.62031 -9.08448 -8.89588 -8.28587 -7.81522 -7.62066 -6.77253 -4.13663 3.17448 3.30643 3.46477 3.90605 4.17398 4.22191 4.44993 4.70776 4.96707 5.18200 5.28285 5.33379 5.60400 5.66189 5.69983 5.78681 5.85078 5.92643 5.94248 5.97849 5.98582 6.01208 6.05017 6.08258 6.19119 6.27056 6.30197 6.38921 6.39940 6.47473 6.60953 6.65403 6.71217 6.84525 7.56812 7.65573 7.77406 7.84763 7.94498 8.40419 9.06952 9.42666 9.92198 10.50928 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.009315 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.253244 B = 3005.317866 C = 3877.149420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.051 3.949 4 C 0.111 3.889 5 N -0.465 5.465 6 C -0.432 4.432 7 H 0.084 0.916 8 C 0.034 3.966 9 N -0.862 5.862 10 Si 1.033 2.967 11 H -0.282 1.282 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.492 3.508 15 O -0.559 6.559 16 C 0.087 3.913 17 H 0.064 0.936 18 C -0.099 4.099 19 C -0.119 4.119 20 C -0.115 4.115 21 C 0.057 3.943 22 N -0.523 5.523 23 C 0.019 3.981 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.276 0.724 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -6.712 -0.648 7.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.027 4.027 4 C -0.013 4.013 5 N -0.188 5.188 6 C -0.559 4.559 7 H 0.101 0.899 8 C -0.177 4.177 9 N -0.493 5.493 10 Si 0.860 3.140 11 H -0.208 1.208 12 H -0.201 1.201 13 H -0.207 1.207 14 C 0.280 3.720 15 O -0.440 6.440 16 C -0.024 4.024 17 H 0.082 0.918 18 C -0.137 4.137 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.071 4.071 22 N -0.248 5.248 23 C -0.128 4.128 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.932 -6.634 0.713 6.946 hybrid contribution -0.699 0.105 -1.254 1.439 sum -2.630 -6.529 -0.541 7.060 Atomic orbital electron populations 1.22627 0.83270 1.01772 0.98793 1.88203 1.17509 1.27126 1.95057 1.22988 0.95659 0.84900 0.99188 1.21744 0.91414 0.99281 0.88865 1.43571 1.58465 1.03961 1.12847 1.20310 1.31706 1.13207 0.90691 0.89852 1.26368 0.97117 0.91396 1.02810 1.70862 1.37333 1.23334 1.17802 0.84239 0.77326 0.76608 0.75854 1.20764 1.20136 1.20656 1.20241 0.80388 0.82722 0.88600 1.90532 1.50058 1.59810 1.43568 1.21289 0.98713 0.87444 0.94944 0.91816 1.21419 0.97527 1.01423 0.93368 1.21578 1.00719 0.95884 0.97447 1.21579 0.98996 0.97194 0.97503 1.22074 0.95830 0.98998 0.90243 1.61637 1.40944 1.16521 1.05700 1.22512 0.92895 1.00487 0.96954 0.95145 0.95006 0.90417 0.94202 0.93153 0.91276 0.89447 0.91304 0.91627 0.90671 0.92251 0.92169 0.92124 0.91306 0.95396 0.91226 0.89003 0.92420 0.96692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.60 8.93 -52.48 -0.47 -8.06 16 3 C 0.05 1.01 6.27 37.16 0.23 1.24 16 4 C 0.11 2.46 4.49 -4.04 -0.02 2.44 16 5 N -0.47 -11.18 1.99 -114.81 -0.23 -11.41 16 6 C -0.43 -10.88 8.08 -14.93 -0.12 -11.01 16 7 H 0.08 2.19 6.00 -52.49 -0.32 1.88 16 8 C 0.03 0.88 5.04 -17.47 -0.09 0.79 16 9 N -0.86 -23.23 13.69 55.50 0.76 -22.47 16 10 Si 1.03 23.42 27.05 -169.99 -4.60 18.82 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -5.79 5.89 56.52 0.33 -5.46 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.49 11.76 5.71 -10.99 -0.06 11.70 16 15 O -0.56 -14.32 12.85 -11.70 -0.15 -14.47 16 16 C 0.09 1.84 1.50 -68.88 -0.10 1.74 16 17 H 0.06 1.45 7.39 -51.93 -0.38 1.07 16 18 C -0.10 -1.90 5.21 -26.65 -0.14 -2.03 16 19 C -0.12 -1.84 6.00 -26.60 -0.16 -2.00 16 20 C -0.11 -1.63 6.09 -26.65 -0.16 -1.79 16 21 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 22 N -0.52 -10.12 4.51 -236.33 -1.07 -11.19 16 23 C 0.02 0.37 9.09 60.07 0.55 0.91 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.55 7.60 -51.93 -0.39 1.16 16 30 H 0.09 1.91 4.85 -51.93 -0.25 1.66 16 31 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.53 6.26 -51.93 -0.33 1.21 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.09 1.96 5.62 -51.93 -0.29 1.67 16 41 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -29.02 323.45 -6.96 -35.98 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.10 Total: 3.42 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 1.02 Total: 4.50 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.53 Total: -45.06 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.62 Total: -22.53 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.60 Total: 18.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.02 -6.96 -35.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602158692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.400 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds