Wall clock time and date at job start Mon Mar 30 2020 01:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00051 * 2 1 4 4 C 1.53002 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47148 * 67.19844 * 4 3 2 6 6 C 1.37103 * 119.99942 * 95.67439 * 5 4 3 7 7 H 1.07997 * 120.00107 * 225.62859 * 6 5 4 8 8 C 1.38946 * 119.99701 * 45.63644 * 6 5 4 9 9 N 1.31418 * 119.99698 * 208.53892 * 8 6 5 10 10 Si 1.86799 * 120.00309 * 28.81504 * 8 6 5 11 11 H 1.48503 * 109.47354 * 174.31179 * 10 8 6 12 12 H 1.48496 * 109.47013 * 294.31115 * 10 8 6 13 13 H 1.48498 * 109.47046 * 54.31418 * 10 8 6 14 14 C 1.34779 * 120.00136 * 275.67895 * 5 4 3 15 15 O 1.21292 * 119.99814 * 359.97438 * 14 5 4 16 16 C 1.50696 * 120.00287 * 180.02562 * 14 5 4 17 17 H 1.08993 * 109.46380 * 40.01167 * 16 14 5 18 18 C 1.53042 * 109.45661 * 280.05132 * 16 14 5 19 19 C 1.53121 * 109.27713 * 180.80479 * 18 16 14 20 20 C 1.53124 * 109.16225 * 57.65101 * 19 18 16 21 21 C 1.53036 * 109.27855 * 302.34977 * 20 19 18 22 22 N 1.46839 * 109.46501 * 159.99948 * 16 14 5 23 23 C 1.46902 * 110.99726 * 305.84982 * 22 16 14 24 24 H 1.09000 * 109.46645 * 299.99486 * 1 2 3 25 25 H 1.08995 * 109.47740 * 59.99690 * 1 2 3 26 26 H 1.09001 * 109.47308 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47050 * 60.00742 * 3 2 1 28 28 H 1.09001 * 109.47493 * 300.00836 * 3 2 1 29 29 H 1.09003 * 109.46934 * 307.20115 * 4 3 2 30 30 H 1.09003 * 109.47454 * 187.19852 * 4 3 2 31 31 H 0.97006 * 119.99793 * 0.27480 * 9 8 6 32 32 H 1.09002 * 109.50178 * 300.74248 * 18 16 14 33 33 H 1.08991 * 109.50620 * 60.86394 * 18 16 14 34 34 H 1.09000 * 109.52111 * 297.75061 * 19 18 16 35 35 H 1.09001 * 109.57481 * 177.58396 * 19 18 16 36 36 H 1.08996 * 109.50487 * 182.40558 * 20 19 18 37 37 H 1.09007 * 109.53282 * 62.30459 * 20 19 18 38 38 H 1.09008 * 109.45961 * 299.16232 * 21 20 19 39 39 H 1.09000 * 109.45233 * 179.19082 * 21 20 19 40 40 H 1.08998 * 109.47068 * 60.00436 * 23 22 16 41 41 H 1.09005 * 109.46956 * 179.97438 * 23 22 16 42 42 H 1.08997 * 109.47048 * 299.99754 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9795 0.6128 -1.2742 6 6 4.3846 1.4374 -2.2918 7 1 4.0341 1.2649 -3.2987 8 6 5.2462 2.4950 -2.0277 9 7 5.2103 3.5744 -2.7764 10 14 6.4607 2.3795 -0.6131 11 1 7.3513 3.5677 -0.6271 12 1 5.7197 2.3314 0.6728 13 1 7.2767 1.1476 -0.7607 14 6 3.9896 -0.7241 -1.4455 15 8 3.6316 -1.4536 -0.5451 16 6 4.4469 -1.3124 -2.7553 17 1 5.3081 -0.7546 -3.1231 18 6 3.3105 -1.2273 -3.7769 19 6 3.7727 -1.8442 -5.0999 20 6 4.2046 -3.2928 -4.8552 21 6 5.3150 -3.3180 -3.8024 22 7 4.8231 -2.7177 -2.5557 23 6 5.8155 -2.8494 -1.4806 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8489 0.5364 0.8177 30 1 3.9782 2.1723 0.1281 31 1 4.5796 3.6344 -3.5110 32 1 2.4441 -1.7734 -3.4037 33 1 3.0421 -0.1830 -3.9365 34 1 4.6148 -1.2746 -5.4929 35 1 2.9529 -1.8249 -5.8179 36 1 4.5749 -3.7241 -5.7851 37 1 3.3525 -3.8720 -4.4992 38 1 6.1723 -2.7507 -4.1651 39 1 5.6147 -4.3492 -3.6155 40 1 5.3970 -2.4642 -0.5508 41 1 6.0761 -3.9002 -1.3535 42 1 6.7092 -2.2818 -1.7396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602158692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:20 Heat of formation + Delta-G solvation = -88.074215 kcal Electronic energy + Delta-G solvation = -22979.485309 eV Core-core repulsion = 19766.225055 eV Total energy + Delta-G solvation = -3213.260254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23681 -39.27812 -38.26052 -36.65738 -34.39222 -33.93257 -32.41128 -30.57764 -27.81461 -27.16817 -26.27441 -24.95101 -23.98737 -23.24674 -21.08377 -20.55589 -19.26525 -17.93251 -17.46183 -16.98463 -16.84009 -16.34892 -16.09681 -15.73072 -15.54657 -15.34669 -15.18137 -14.87989 -14.73149 -13.97526 -13.87161 -13.67525 -13.55597 -13.14084 -12.96288 -12.75298 -12.56852 -12.42302 -12.23907 -12.02668 -11.88662 -11.74904 -11.65968 -11.56803 -11.25168 -10.85684 -10.54462 -10.12229 -9.73099 -9.22150 -8.79394 -6.17265 1.35189 1.44547 1.65582 2.05748 2.30811 2.54320 2.91100 2.98600 3.22196 3.89825 3.93756 4.01164 4.18184 4.24746 4.28418 4.32805 4.36800 4.47779 4.50511 4.51742 4.54101 4.58770 4.65525 4.66731 4.77989 4.79668 4.86418 4.94968 4.99549 5.04029 5.10573 5.14530 5.22962 5.43787 5.80311 5.94818 6.03497 6.24685 6.33035 6.40730 7.08582 7.49565 7.99900 8.46218 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.009315 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.253244 B = 3005.317866 C = 3877.149420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.057 3.943 4 C 0.103 3.897 5 N -0.473 5.473 6 C -0.423 4.423 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.885 5.885 10 Si 1.060 2.940 11 H -0.279 1.279 12 H -0.250 1.250 13 H -0.283 1.283 14 C 0.486 3.514 15 O -0.578 6.578 16 C 0.092 3.908 17 H 0.042 0.958 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.109 4.109 21 C 0.052 3.948 22 N -0.534 5.534 23 C 0.023 3.977 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.269 0.731 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -8.021 -0.680 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.020 4.020 4 C -0.020 4.020 5 N -0.196 5.196 6 C -0.550 4.550 7 H 0.083 0.917 8 C -0.202 4.202 9 N -0.518 5.518 10 Si 0.883 3.117 11 H -0.205 1.205 12 H -0.175 1.175 13 H -0.209 1.209 14 C 0.275 3.725 15 O -0.460 6.460 16 C -0.019 4.019 17 H 0.060 0.940 18 C -0.131 4.131 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.075 4.075 22 N -0.260 5.260 23 C -0.125 4.125 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.089 -7.944 0.679 8.242 hybrid contribution -0.717 0.447 -1.252 1.510 sum -2.805 -7.498 -0.573 8.026 Atomic orbital electron populations 1.22831 0.80786 1.02980 1.00250 1.88142 1.20334 1.27593 1.95337 1.22865 0.94045 0.84979 1.00151 1.21850 0.93347 0.99005 0.87792 1.43684 1.58685 1.04105 1.13142 1.20145 1.31462 1.12989 0.90438 0.91747 1.27161 0.97876 0.91017 1.04111 1.70940 1.37994 1.24297 1.18542 0.83871 0.76174 0.76406 0.75255 1.20472 1.17504 1.20930 1.20729 0.79829 0.82584 0.89362 1.90507 1.50932 1.60120 1.44436 1.21186 0.98399 0.88478 0.93831 0.94007 1.21338 0.96475 1.00275 0.95000 1.21572 1.01378 0.96689 0.95517 1.21586 0.98513 0.96012 0.98539 1.22270 0.96370 0.99903 0.88993 1.61691 1.41755 1.14936 1.07606 1.22451 0.92327 1.02165 0.95573 0.92614 0.94506 0.89427 0.90868 0.94370 0.91730 0.89288 0.92132 0.92675 0.92899 0.92516 0.89957 0.88640 0.91336 0.95442 0.88707 0.92005 0.89389 0.96932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -16.38 8.93 -132.49 -1.18 -17.56 16 3 C 0.06 2.25 6.27 71.98 0.45 2.70 16 4 C 0.10 4.57 4.49 86.38 0.39 4.95 16 5 N -0.47 -23.03 1.99 -635.54 -1.27 -24.29 16 6 C -0.42 -21.79 8.08 84.04 0.68 -21.11 16 7 H 0.06 3.53 6.00 -2.91 -0.02 3.51 16 8 C 0.01 0.27 5.04 84.92 0.43 0.70 16 9 N -0.89 -48.37 13.69 21.66 0.30 -48.07 16 10 Si 1.06 47.02 27.05 68.60 1.86 48.87 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.25 -10.04 5.89 99.48 0.59 -9.45 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.49 23.56 5.71 87.66 0.50 24.06 16 15 O -0.58 -29.92 12.85 13.42 0.17 -29.75 16 16 C 0.09 3.95 1.50 44.19 0.07 4.02 16 17 H 0.04 1.96 7.39 -2.39 -0.02 1.94 16 18 C -0.09 -3.56 5.21 30.65 0.16 -3.40 16 19 C -0.11 -3.35 6.00 30.68 0.18 -3.16 16 20 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 21 C 0.05 1.50 5.46 86.32 0.47 1.98 16 22 N -0.53 -20.17 4.51 -901.60 -4.07 -24.24 16 23 C 0.02 0.84 9.09 127.69 1.16 2.00 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 2.89 7.60 -2.39 -0.02 2.87 16 30 H 0.09 3.83 4.85 -2.39 -0.01 3.82 16 31 H 0.27 14.67 8.73 -92.70 -0.81 13.86 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 2.23 6.26 -2.39 -0.01 2.21 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.09 2.29 8.09 -2.39 -0.02 2.27 16 40 H 0.06 2.65 5.62 -2.39 -0.01 2.63 16 41 H 0.09 2.63 8.09 -2.38 -0.02 2.61 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -63.08 323.45 2.56 -60.52 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.83 Total: 22.26 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.93 Total: 12.26 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -5.03 Total: -96.60 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.01 Total: -47.31 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.86 Total: 48.87 kcal Total: -63.08 2.56 -60.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602158692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.556 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds