Wall clock time and date at job start Mon Mar 30 2020 01:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.47073 * 120.88015 * 359.71688 * 8 6 5 10 10 C 1.53700 * 108.27459 * 128.75651 * 9 8 6 11 11 N 1.46900 * 109.25570 * 54.08553 * 10 9 8 12 12 C 1.46898 * 111.00213 * 172.60510 * 11 10 9 13 13 C 1.50697 * 109.47185 * 294.30305 * 12 11 10 14 14 H 1.07996 * 120.00426 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00022 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47106 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46955 * 120.00535 * 17 15 13 20 20 H 1.48498 * 109.47248 * 239.99952 * 17 15 13 21 21 C 1.46901 * 111.26597 * 296.75538 * 11 10 9 22 22 C 1.47082 * 120.87841 * 180.02562 * 8 6 5 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 29 29 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 30 30 H 1.09000 * 109.47486 * 300.00062 * 5 4 3 31 31 H 1.09001 * 109.47362 * 60.00784 * 5 4 3 32 32 H 1.09001 * 109.63240 * 248.52860 * 9 8 6 33 33 H 1.09004 * 109.63279 * 9.11073 * 9 8 6 34 34 H 1.08999 * 109.64944 * 294.08140 * 10 9 8 35 35 H 1.08998 * 109.42183 * 173.94694 * 10 9 8 36 36 H 1.09003 * 109.47023 * 54.30091 * 12 11 10 37 37 H 1.09001 * 109.46886 * 174.29953 * 12 11 10 38 38 H 0.97004 * 119.99949 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.49457 * 303.14518 * 21 11 10 40 40 H 1.09009 * 109.48889 * 183.06006 * 21 11 10 41 41 H 1.08992 * 109.62867 * 350.88905 * 22 8 6 42 42 H 1.08998 * 109.62977 * 111.47943 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0583 -0.0001 8 7 5.9072 4.2742 -0.0002 9 6 5.0923 5.4985 -0.0065 10 6 5.5807 6.4085 1.1319 11 7 7.0269 6.6250 0.9924 12 6 7.5044 7.6274 1.9542 13 6 6.9003 8.9679 1.6243 14 1 6.2291 9.0657 0.7838 15 6 7.2044 10.0698 2.3953 16 7 8.0221 9.9509 3.4184 17 14 6.4561 11.7316 1.9859 18 1 5.5770 11.5990 0.7965 19 1 5.6563 12.2124 3.1410 20 1 7.5398 12.7044 1.6950 21 6 7.7701 5.3655 1.1319 22 6 7.3715 4.4129 -0.0008 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8333 0.9767 0.8908 29 1 3.8339 0.9765 -0.8892 30 1 3.4229 3.4214 -0.8905 31 1 3.4222 3.4225 0.8895 32 1 5.2064 6.0096 -0.9625 33 1 4.0447 5.2420 0.1520 34 1 5.3746 5.9364 2.0925 35 1 5.0628 7.3660 1.0781 36 1 7.2092 7.3338 2.9616 37 1 8.5910 7.6950 1.8992 38 1 8.2358 10.7260 3.9612 39 1 7.5335 4.9081 2.0924 40 1 8.8401 5.5668 1.0780 41 1 7.8316 3.4382 0.1614 42 1 7.7002 4.8218 -0.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:42 Heat of formation + Delta-G solvation = -81.572255 kcal Electronic energy + Delta-G solvation = -20877.102189 eV Core-core repulsion = 17664.123881 eV Total energy + Delta-G solvation = -3212.978308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09372 -38.25523 -37.46053 -34.43919 -32.85772 -32.37284 -31.07057 -30.09565 -28.21340 -25.68474 -23.96868 -23.12914 -23.01423 -21.86435 -20.44851 -18.59640 -17.51366 -16.63296 -16.42031 -16.27581 -15.60033 -15.41691 -14.80713 -14.49450 -14.44099 -14.12897 -13.79955 -13.61981 -13.40272 -12.91022 -12.62881 -12.38941 -12.19625 -11.99957 -11.82039 -11.33818 -11.29731 -11.26650 -11.06498 -10.97486 -10.77056 -10.65833 -10.53394 -9.93188 -9.80914 -9.71111 -9.29404 -8.54295 -8.46419 -7.36121 -6.08771 -4.10924 2.65521 2.89632 3.27167 3.35012 3.38857 3.60073 4.36759 4.58987 4.73666 4.76299 4.80833 4.88956 5.00978 5.11904 5.23094 5.26885 5.32436 5.37540 5.43686 5.51288 5.58652 5.62513 5.63286 5.68189 5.75457 5.82873 5.86228 6.00812 6.25572 6.42008 6.44265 6.64419 6.96692 7.19033 7.25001 7.50081 7.71842 7.98492 8.08979 8.19657 8.44426 8.96584 9.53850 11.02088 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.003366 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.058592 B = 8317.233524 C = 9041.009186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.555 6.555 8 N -0.606 5.606 9 C 0.107 3.893 10 C 0.050 3.950 11 N -0.536 5.536 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.041 3.959 22 C 0.118 3.882 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.026 0.974 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 -15.750 -6.933 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.003 3.997 5 C -0.179 4.179 6 C 0.306 3.694 7 O -0.434 6.434 8 N -0.339 5.339 9 C -0.016 4.016 10 C -0.080 4.080 11 N -0.261 5.261 12 C 0.068 3.932 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.088 4.088 22 C -0.005 4.005 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.009 0.991 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.426 -15.817 -7.255 20.286 hybrid contribution -0.242 0.597 0.794 1.022 sum -10.668 -15.220 -6.461 19.677 Atomic orbital electron populations 1.21750 0.93737 1.02188 1.03186 1.22437 0.95470 0.83679 1.00211 1.87814 1.21260 1.26643 1.95570 1.22107 0.80480 0.95536 1.01601 1.21490 0.92864 0.97878 1.05635 1.20336 0.90012 0.82945 0.76063 1.90670 1.65373 1.36127 1.51256 1.48226 1.07832 1.05758 1.72081 1.22167 0.94137 0.84495 1.00815 1.22420 0.91142 0.99543 0.94857 1.62082 1.02122 1.07354 1.54579 1.19735 0.96228 0.89100 0.88104 1.21170 1.27883 0.92498 1.13243 0.91723 1.25005 0.95315 0.99295 0.95016 1.69968 1.35337 1.30446 1.17926 0.86435 0.79004 0.83690 0.78248 1.19602 1.21114 1.20994 1.22414 0.99422 0.91085 0.95928 1.21775 0.79036 0.99999 0.99652 0.91838 0.91156 0.91794 0.93378 0.93348 0.92493 0.92516 0.88035 0.87965 0.90389 0.89934 0.95623 0.88377 0.99094 0.95007 0.92901 0.95539 0.90026 0.89404 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.39 -4.44 10.34 -35.23 -0.36 -4.80 16 4 C 0.08 0.91 5.23 37.16 0.19 1.10 16 5 C -0.14 -1.57 4.43 -27.88 -0.12 -1.69 16 6 C 0.52 7.54 7.71 -10.98 -0.08 7.45 16 7 O -0.56 -9.65 15.43 5.56 0.09 -9.56 16 8 N -0.61 -8.98 3.00 -172.16 -0.52 -9.49 16 9 C 0.11 1.47 6.53 -3.37 -0.02 1.45 16 10 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 11 N -0.54 -11.00 4.62 -235.44 -1.09 -12.09 16 12 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 13 C -0.51 -13.74 8.41 -34.44 -0.29 -14.03 16 14 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 15 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.04 0.73 5.62 -3.68 -0.02 0.70 16 22 C 0.12 1.82 6.60 -3.58 -0.02 1.80 16 23 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.25 16 29 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.10 1.00 7.99 -51.93 -0.41 0.58 16 31 H 0.10 1.08 7.67 -51.93 -0.40 0.68 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.90 6.02 -51.93 -0.31 0.59 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 37 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.41 7.99 -51.92 -0.41 0.99 16 41 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -31.20 339.07 -8.18 -39.39 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -7.24 Total: -3.11 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 0.12 Total: 4.00 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.87 Total: -47.02 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.28 Total: -14.36 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.20 -8.18 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.187 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds