Wall clock time and date at job start Mon Mar 30 2020 01:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.47073 * 120.88015 * 359.71688 * 8 6 5 10 10 C 1.53700 * 108.27459 * 128.75651 * 9 8 6 11 11 N 1.46900 * 109.25570 * 54.08553 * 10 9 8 12 12 C 1.46898 * 111.00213 * 172.60510 * 11 10 9 13 13 C 1.50697 * 109.47185 * 294.30305 * 12 11 10 14 14 H 1.07996 * 120.00426 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00022 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47106 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46955 * 120.00535 * 17 15 13 20 20 H 1.48498 * 109.47248 * 239.99952 * 17 15 13 21 21 C 1.46901 * 111.26597 * 296.75538 * 11 10 9 22 22 C 1.47082 * 120.87841 * 180.02562 * 8 6 5 23 23 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 24 24 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 26 26 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 27 27 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 28 28 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 29 29 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 30 30 H 1.09000 * 109.47486 * 300.00062 * 5 4 3 31 31 H 1.09001 * 109.47362 * 60.00784 * 5 4 3 32 32 H 1.09001 * 109.63240 * 248.52860 * 9 8 6 33 33 H 1.09004 * 109.63279 * 9.11073 * 9 8 6 34 34 H 1.08999 * 109.64944 * 294.08140 * 10 9 8 35 35 H 1.08998 * 109.42183 * 173.94694 * 10 9 8 36 36 H 1.09003 * 109.47023 * 54.30091 * 12 11 10 37 37 H 1.09001 * 109.46886 * 174.29953 * 12 11 10 38 38 H 0.97004 * 119.99949 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.49457 * 303.14518 * 21 11 10 40 40 H 1.09009 * 109.48889 * 183.06006 * 21 11 10 41 41 H 1.08992 * 109.62867 * 350.88905 * 22 8 6 42 42 H 1.08998 * 109.62977 * 111.47943 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0583 -0.0001 8 7 5.9072 4.2742 -0.0002 9 6 5.0923 5.4985 -0.0065 10 6 5.5807 6.4085 1.1319 11 7 7.0269 6.6250 0.9924 12 6 7.5044 7.6274 1.9542 13 6 6.9003 8.9679 1.6243 14 1 6.2291 9.0657 0.7838 15 6 7.2044 10.0698 2.3953 16 7 8.0221 9.9509 3.4184 17 14 6.4561 11.7316 1.9859 18 1 5.5770 11.5990 0.7965 19 1 5.6563 12.2124 3.1410 20 1 7.5398 12.7044 1.6950 21 6 7.7701 5.3655 1.1319 22 6 7.3715 4.4129 -0.0008 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8333 0.9767 0.8908 29 1 3.8339 0.9765 -0.8892 30 1 3.4229 3.4214 -0.8905 31 1 3.4222 3.4225 0.8895 32 1 5.2064 6.0096 -0.9625 33 1 4.0447 5.2420 0.1520 34 1 5.3746 5.9364 2.0925 35 1 5.0628 7.3660 1.0781 36 1 7.2092 7.3338 2.9616 37 1 8.5910 7.6950 1.8992 38 1 8.2358 10.7260 3.9612 39 1 7.5335 4.9081 2.0924 40 1 8.8401 5.5668 1.0780 41 1 7.8316 3.4382 0.1614 42 1 7.7002 4.8218 -0.9562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:41 Heat of formation + Delta-G solvation = -103.060319 kcal Electronic energy + Delta-G solvation = -20878.033981 eV Core-core repulsion = 17664.123881 eV Total energy + Delta-G solvation = -3213.910100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29983 -39.27785 -38.69727 -35.99121 -34.45338 -33.59722 -32.20735 -31.05163 -29.91372 -27.34230 -25.14878 -24.50177 -23.67025 -23.51633 -21.84867 -19.81134 -18.56608 -18.49131 -17.48265 -17.32338 -16.76714 -16.60188 -16.41904 -16.01018 -15.61888 -15.30468 -15.17685 -14.93785 -14.57793 -14.21522 -14.01894 -13.56049 -13.20646 -13.09783 -12.99566 -12.75980 -12.68508 -12.60678 -12.39221 -12.27684 -12.10775 -12.03489 -11.97400 -11.76539 -11.26925 -10.92046 -10.62531 -10.59788 -9.79544 -9.07001 -8.20217 -6.30556 1.43684 1.44754 1.52038 1.57943 1.82075 2.41464 2.72272 3.12544 3.22835 3.57459 3.88336 4.00380 4.01775 4.08011 4.18321 4.23026 4.28679 4.37912 4.42284 4.44311 4.50645 4.58412 4.71964 4.75407 4.78796 4.86438 4.92221 4.94660 5.02183 5.05314 5.19384 5.22660 5.29180 5.42798 5.64478 6.02297 6.18797 6.22159 6.39537 6.55490 6.85890 7.04505 7.39698 8.91431 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027282 B = 0.003366 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.058592 B = 8317.233524 C = 9041.009186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.083 3.917 5 C -0.132 4.132 6 C 0.518 3.482 7 O -0.586 6.586 8 N -0.610 5.610 9 C 0.118 3.882 10 C 0.047 3.953 11 N -0.540 5.540 12 C 0.208 3.792 13 C -0.519 4.519 14 H 0.071 0.929 15 C -0.001 4.001 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.257 1.257 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.043 3.957 22 C 0.127 3.873 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.015 0.985 35 H 0.088 0.912 36 H -0.041 1.041 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.014 0.986 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.917 -15.810 -8.486 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.325 6.325 4 C 0.006 3.994 5 C -0.171 4.171 6 C 0.308 3.692 7 O -0.467 6.467 8 N -0.343 5.343 9 C -0.004 4.004 10 C -0.081 4.081 11 N -0.264 5.264 12 C 0.081 3.919 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.199 4.199 16 N -0.578 5.578 17 Si 0.796 3.204 18 H -0.181 1.181 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.086 4.086 22 C 0.004 3.996 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.034 0.966 35 H 0.106 0.894 36 H -0.024 1.024 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.520 -15.897 -8.827 22.077 hybrid contribution 0.419 0.528 1.306 1.470 sum -12.101 -15.369 -7.521 20.957 Atomic orbital electron populations 1.21764 0.92460 1.03440 1.02889 1.22677 0.96550 0.82708 1.00810 1.87791 1.20842 1.28226 1.95624 1.22008 0.80803 0.95550 1.01023 1.21481 0.90149 0.98225 1.07265 1.20871 0.91283 0.82131 0.74874 1.90660 1.66422 1.37080 1.52550 1.48309 1.07522 1.06372 1.72070 1.22173 0.95617 0.83251 0.99343 1.22486 0.89211 1.00084 0.96361 1.62018 1.04040 1.07819 1.52566 1.19382 0.94498 0.90405 0.87567 1.21489 1.27776 0.93231 1.13262 0.91085 1.25957 0.95678 1.03488 0.94755 1.70105 1.36850 1.31705 1.19148 0.85298 0.78215 0.78431 0.78459 1.18075 1.20685 1.20799 1.22443 0.99269 0.90331 0.96558 1.21619 0.79999 0.99189 0.98799 0.91958 0.89184 0.92217 0.92604 0.92972 0.93490 0.92818 0.85712 0.86723 0.89257 0.86224 0.96635 0.89405 1.02376 0.97792 0.92761 0.96769 0.90113 0.89228 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -8.33 10.34 -148.98 -1.54 -9.88 16 4 C 0.08 1.75 5.23 71.98 0.38 2.13 16 5 C -0.13 -2.60 4.43 29.85 0.13 -2.47 16 6 C 0.52 14.03 7.71 87.66 0.68 14.71 16 7 O -0.59 -19.71 15.43 -3.03 -0.05 -19.75 16 8 N -0.61 -16.84 3.00 -816.97 -2.45 -19.30 16 9 C 0.12 2.94 6.53 86.51 0.57 3.51 16 10 C 0.05 1.65 5.47 86.54 0.47 2.13 16 11 N -0.54 -22.30 4.62 -898.79 -4.15 -26.45 16 12 C 0.21 10.84 4.72 85.56 0.40 11.24 16 13 C -0.52 -28.27 8.41 25.60 0.22 -28.05 16 14 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 15 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 16 N -0.94 -55.83 13.29 21.45 0.28 -55.54 16 17 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 C 0.04 1.55 5.62 86.40 0.49 2.03 16 22 C 0.13 3.78 6.60 86.36 0.57 4.35 16 23 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.12 1.94 7.99 -2.39 -0.02 1.92 16 31 H 0.11 2.04 7.67 -2.39 -0.02 2.02 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.12 2.13 6.02 -2.38 -0.01 2.11 16 34 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 3.24 6.67 -2.39 -0.02 3.23 16 36 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 37 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 2.86 7.99 -2.38 -0.02 2.84 16 41 H 0.09 2.68 7.06 -2.39 -0.02 2.66 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -67.91 339.07 0.67 -67.23 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.97 Total: 8.56 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.58 Total: 10.17 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -6.32 Total: -101.29 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.59 Total: -29.63 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -67.91 0.67 -67.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.827 kcal (2) G-P(sol) polarization free energy of solvation -67.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds