Wall clock time and date at job start Mon Mar 30 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99657 * 2 1 4 4 C 1.53005 * 109.46822 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46769 * 65.00214 * 4 3 2 6 6 C 1.46496 * 119.99875 * 269.99427 * 5 4 3 7 7 C 1.50696 * 109.47414 * 270.00441 * 6 5 4 8 8 H 1.08001 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99737 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00129 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46943 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47116 * 119.99911 * 11 9 7 14 14 H 1.48498 * 109.47271 * 240.00241 * 11 9 7 15 15 C 1.34770 * 120.00075 * 90.00252 * 5 4 3 16 16 O 1.21278 * 120.00060 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99968 * 359.97438 * 15 5 4 18 18 H 1.09000 * 110.59954 * 321.55193 * 17 15 5 19 19 C 1.54933 * 110.67031 * 84.74191 * 17 15 5 20 20 C 1.54593 * 102.92591 * 155.84811 * 19 17 15 21 21 C 1.53997 * 105.13807 * 338.04317 * 20 19 17 22 22 N 1.47899 * 107.05889 * 358.77516 * 21 20 19 23 23 C 1.46897 * 111.00068 * 145.84368 * 22 21 20 24 24 H 1.09000 * 109.47212 * 300.00074 * 1 2 3 25 25 H 1.09002 * 109.47445 * 59.99887 * 1 2 3 26 26 H 1.09007 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47132 * 60.00097 * 3 2 1 28 28 H 1.09000 * 109.47165 * 299.99736 * 3 2 1 29 29 H 1.08998 * 109.47098 * 305.00436 * 4 3 2 30 30 H 1.08993 * 109.46954 * 184.99904 * 4 3 2 31 31 H 1.09008 * 109.47225 * 30.00400 * 6 5 4 32 32 H 1.08998 * 109.47232 * 150.00330 * 6 5 4 33 33 H 0.96997 * 119.99848 * 179.97438 * 10 9 7 34 34 H 1.09007 * 110.72333 * 37.48738 * 19 17 15 35 35 H 1.09004 * 110.72411 * 274.20932 * 19 17 15 36 36 H 1.09004 * 110.30922 * 219.12663 * 20 19 17 37 37 H 1.08998 * 110.30989 * 96.95784 * 20 19 17 38 38 H 1.09004 * 109.91456 * 118.12612 * 21 20 19 39 39 H 1.09001 * 109.91811 * 239.22178 * 21 20 19 40 40 H 1.08997 * 109.47068 * 59.87036 * 23 22 21 41 41 H 1.08995 * 109.47309 * 179.87726 * 23 22 21 42 42 H 1.09002 * 109.46929 * 299.87387 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.1063 -0.8924 -1.3403 7 6 5.5017 -1.2980 -0.9413 8 1 6.2200 -0.5460 -0.6498 9 6 5.8611 -2.6291 -0.9473 10 7 4.9859 -3.5449 -1.3008 11 14 7.5910 -3.1318 -0.4533 12 1 8.3765 -1.9217 -0.1010 13 1 7.5267 -4.0388 0.7208 14 1 8.2450 -3.8344 -1.5864 15 6 4.2633 1.3330 -2.3200 16 8 4.6281 0.8191 -3.3562 17 6 4.1295 2.8312 -2.2281 18 1 3.2550 3.1026 -1.6368 19 6 5.4140 3.4594 -1.6315 20 6 5.3762 4.9061 -2.1753 21 6 4.4727 4.8440 -3.4209 22 7 4.0538 3.4349 -3.5832 23 6 2.6898 3.3499 -4.1219 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 3.3858 -1.3631 -0.6713 32 1 3.9139 -1.2122 -2.3645 33 1 5.2388 -4.4813 -1.3054 34 1 6.3011 2.9361 -1.9886 35 1 5.3751 3.4557 -0.5422 36 1 6.3788 5.2329 -2.4511 37 1 4.9493 5.5788 -1.4315 38 1 3.5974 5.4773 -3.2766 39 1 5.0281 5.1729 -4.2992 40 1 2.6517 3.8420 -5.0937 41 1 2.4077 2.3030 -4.2333 42 1 1.9979 3.8418 -3.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610556185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:30 Heat of formation + Delta-G solvation = -66.364562 kcal Electronic energy + Delta-G solvation = -22278.542069 eV Core-core repulsion = 19066.223216 eV Total energy + Delta-G solvation = -3212.318853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83127 -37.91816 -37.16509 -34.71060 -32.63235 -32.07998 -29.76125 -29.27764 -26.84863 -25.93486 -25.52798 -23.26210 -22.70054 -21.08672 -20.80310 -18.33831 -17.04631 -16.35286 -16.18486 -15.91359 -15.43441 -15.05578 -14.76796 -14.41677 -14.22028 -13.81499 -13.65362 -13.54790 -12.85808 -12.48430 -12.33035 -11.99113 -11.92127 -11.68987 -11.63476 -11.38219 -11.34197 -11.15691 -10.96071 -10.87724 -10.76727 -10.59524 -10.35447 -10.04735 -9.48503 -9.44210 -8.78739 -8.30748 -8.20194 -7.51989 -5.91691 -3.95420 3.36758 3.43318 3.45845 3.48862 3.72977 4.04416 4.33710 4.54870 4.68936 4.72130 4.94268 5.12049 5.18993 5.30396 5.41637 5.41734 5.42278 5.45620 5.48756 5.53565 5.54905 5.59923 5.63999 5.73158 5.83191 5.84436 5.89251 6.00768 6.10980 6.23307 6.28101 6.85622 7.08936 7.36667 7.40867 7.64471 7.71405 8.06807 8.38963 8.58071 9.04612 9.26176 9.68550 11.16386 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.006905 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.633714 B = 4054.282703 C = 5195.433212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.251 3.749 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.513 3.487 16 O -0.517 6.517 17 C 0.044 3.956 18 H 0.065 0.935 19 C -0.111 4.111 20 C -0.129 4.129 21 C 0.037 3.963 22 N -0.496 5.496 23 C 0.020 3.980 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 16.974 2.900 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.034 4.034 4 C -0.014 4.014 5 N -0.324 5.324 6 C 0.132 3.868 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.298 3.702 16 O -0.392 6.392 17 C -0.068 4.068 18 H 0.082 0.918 19 C -0.150 4.150 20 C -0.167 4.167 21 C -0.091 4.091 22 N -0.221 5.221 23 C -0.129 4.129 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.494 16.026 1.925 17.398 hybrid contribution 0.006 0.343 0.887 0.952 sum -6.488 16.369 2.812 17.831 Atomic orbital electron populations 1.22704 0.82091 1.02640 0.99044 1.88117 1.18675 1.26811 1.95102 1.23132 0.95557 0.85481 0.99239 1.21532 0.91007 0.98955 0.89951 1.48165 1.64743 1.09739 1.09749 1.19282 0.96653 0.72091 0.98766 1.21523 0.97543 0.92176 1.44933 0.92596 1.24918 0.97281 0.96458 0.95478 1.69958 1.34196 1.00866 1.48335 0.86496 0.84745 0.78438 0.78026 1.19880 1.21090 1.20992 1.19915 0.78812 0.87251 0.84240 1.90669 1.45079 1.74196 1.29249 1.22893 0.98741 0.94624 0.90555 0.91764 1.22436 0.97550 0.95021 0.99963 1.22400 1.00557 0.96906 0.96832 1.22883 0.98205 0.89361 0.98696 1.64385 1.23992 1.12719 1.20960 1.22505 0.88074 1.02819 0.99463 0.94695 0.94682 0.89702 0.93169 0.94072 0.88914 0.90287 0.93721 0.94394 0.92964 0.89716 0.90422 0.90685 0.91456 0.93993 0.90194 0.91241 0.90872 0.95950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.43 9.53 -35.23 -0.34 -6.77 16 3 C 0.04 0.64 6.09 37.16 0.23 0.86 16 4 C 0.11 1.83 5.43 -4.04 -0.02 1.81 16 5 N -0.59 -12.92 2.42 -175.06 -0.42 -13.34 16 6 C 0.25 6.84 4.98 -5.20 -0.03 6.82 16 7 C -0.52 -15.27 9.39 -34.44 -0.32 -15.59 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 11 Si 0.89 22.46 29.54 -169.99 -5.02 17.43 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.51 11.15 6.71 -10.99 -0.07 11.07 16 16 O -0.52 -13.83 16.19 5.56 0.09 -13.74 16 17 C 0.04 0.70 1.69 -66.94 -0.11 0.59 16 18 H 0.06 0.90 6.04 -51.93 -0.31 0.58 16 19 C -0.11 -1.54 6.21 -24.87 -0.15 -1.69 16 20 C -0.13 -1.38 6.93 -25.37 -0.18 -1.56 16 21 C 0.04 0.43 6.70 -2.75 -0.02 0.41 16 22 N -0.50 -7.80 4.85 -232.21 -1.13 -8.92 16 23 C 0.02 0.28 9.29 60.06 0.56 0.84 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.57 7.33 -51.93 -0.38 0.19 16 29 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 30 H 0.08 1.04 5.33 -51.93 -0.28 0.77 16 31 H 0.04 1.26 7.12 -51.92 -0.37 0.90 16 32 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.38 8.05 -51.92 -0.42 0.96 16 35 H 0.08 0.91 7.00 -51.93 -0.36 0.55 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.42 7.73 -51.93 -0.40 0.02 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 42 H 0.02 0.26 8.00 -51.93 -0.42 -0.15 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.62 338.37 -7.17 -42.79 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -7.09 Total: -2.58 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.89 Total: 6.76 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.81 Total: -48.99 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.25 Total: -20.51 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.62 -7.17 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610556185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.575 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds