Wall clock time and date at job start Mon Mar 30 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99657 * 2 1 4 4 C 1.53005 * 109.46822 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46769 * 65.00214 * 4 3 2 6 6 C 1.46496 * 119.99875 * 269.99427 * 5 4 3 7 7 C 1.50696 * 109.47414 * 270.00441 * 6 5 4 8 8 H 1.08001 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99737 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00129 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46943 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47116 * 119.99911 * 11 9 7 14 14 H 1.48498 * 109.47271 * 240.00241 * 11 9 7 15 15 C 1.34770 * 120.00075 * 90.00252 * 5 4 3 16 16 O 1.21278 * 120.00060 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99968 * 359.97438 * 15 5 4 18 18 H 1.09000 * 110.59954 * 321.55193 * 17 15 5 19 19 C 1.54933 * 110.67031 * 84.74191 * 17 15 5 20 20 C 1.54593 * 102.92591 * 155.84811 * 19 17 15 21 21 C 1.53997 * 105.13807 * 338.04317 * 20 19 17 22 22 N 1.47899 * 107.05889 * 358.77516 * 21 20 19 23 23 C 1.46897 * 111.00068 * 145.84368 * 22 21 20 24 24 H 1.09000 * 109.47212 * 300.00074 * 1 2 3 25 25 H 1.09002 * 109.47445 * 59.99887 * 1 2 3 26 26 H 1.09007 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47132 * 60.00097 * 3 2 1 28 28 H 1.09000 * 109.47165 * 299.99736 * 3 2 1 29 29 H 1.08998 * 109.47098 * 305.00436 * 4 3 2 30 30 H 1.08993 * 109.46954 * 184.99904 * 4 3 2 31 31 H 1.09008 * 109.47225 * 30.00400 * 6 5 4 32 32 H 1.08998 * 109.47232 * 150.00330 * 6 5 4 33 33 H 0.96997 * 119.99848 * 179.97438 * 10 9 7 34 34 H 1.09007 * 110.72333 * 37.48738 * 19 17 15 35 35 H 1.09004 * 110.72411 * 274.20932 * 19 17 15 36 36 H 1.09004 * 110.30922 * 219.12663 * 20 19 17 37 37 H 1.08998 * 110.30989 * 96.95784 * 20 19 17 38 38 H 1.09004 * 109.91456 * 118.12612 * 21 20 19 39 39 H 1.09001 * 109.91811 * 239.22178 * 21 20 19 40 40 H 1.08997 * 109.47068 * 59.87036 * 23 22 21 41 41 H 1.08995 * 109.47309 * 179.87726 * 23 22 21 42 42 H 1.09002 * 109.46929 * 299.87387 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.1063 -0.8924 -1.3403 7 6 5.5017 -1.2980 -0.9413 8 1 6.2200 -0.5460 -0.6498 9 6 5.8611 -2.6291 -0.9473 10 7 4.9859 -3.5449 -1.3008 11 14 7.5910 -3.1318 -0.4533 12 1 8.3765 -1.9217 -0.1010 13 1 7.5267 -4.0388 0.7208 14 1 8.2450 -3.8344 -1.5864 15 6 4.2633 1.3330 -2.3200 16 8 4.6281 0.8191 -3.3562 17 6 4.1295 2.8312 -2.2281 18 1 3.2550 3.1026 -1.6368 19 6 5.4140 3.4594 -1.6315 20 6 5.3762 4.9061 -2.1753 21 6 4.4727 4.8440 -3.4209 22 7 4.0538 3.4349 -3.5832 23 6 2.6898 3.3499 -4.1219 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8426 30 1 3.9784 2.1766 0.0902 31 1 3.3858 -1.3631 -0.6713 32 1 3.9139 -1.2122 -2.3645 33 1 5.2388 -4.4813 -1.3054 34 1 6.3011 2.9361 -1.9886 35 1 5.3751 3.4557 -0.5422 36 1 6.3788 5.2329 -2.4511 37 1 4.9493 5.5788 -1.4315 38 1 3.5974 5.4773 -3.2766 39 1 5.0281 5.1729 -4.2992 40 1 2.6517 3.8420 -5.0937 41 1 2.4077 2.3030 -4.2333 42 1 1.9979 3.8418 -3.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610556185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:30 Heat of formation + Delta-G solvation = -93.657657 kcal Electronic energy + Delta-G solvation = -22279.725586 eV Core-core repulsion = 19066.223216 eV Total energy + Delta-G solvation = -3213.502370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26019 -39.15183 -38.55644 -36.47008 -34.79036 -33.12731 -31.35137 -30.50246 -28.66858 -27.11223 -26.61561 -25.13547 -24.10540 -22.46473 -21.78297 -19.88175 -18.60844 -18.40919 -17.53512 -17.07787 -16.71547 -16.60627 -16.21859 -15.97586 -15.44713 -15.31378 -15.03103 -14.61223 -14.39426 -14.08220 -13.59593 -13.58043 -13.22859 -13.06862 -12.94346 -12.82803 -12.70728 -12.58558 -12.45854 -12.33815 -12.17244 -12.04381 -11.93663 -11.64021 -11.51113 -10.63139 -10.57803 -10.45684 -9.39287 -9.30348 -8.18198 -6.33103 1.35801 1.38921 1.50672 1.85186 2.22696 2.43117 2.94759 3.10319 3.12978 3.55325 3.67572 3.92179 3.98439 4.15631 4.20913 4.30454 4.36277 4.40631 4.43056 4.46926 4.51996 4.57721 4.60570 4.76922 4.85003 4.88325 4.92986 4.95594 5.01659 5.14223 5.20293 5.29733 5.30911 5.60599 5.81009 5.94126 6.09244 6.12202 6.33523 6.76533 6.88067 7.32449 7.57587 8.89272 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.006905 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.633714 B = 4054.282703 C = 5195.433212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.046 3.954 4 C 0.103 3.897 5 N -0.596 5.596 6 C 0.274 3.726 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.969 3.031 12 H -0.264 1.264 13 H -0.268 1.268 14 H -0.283 1.283 15 C 0.503 3.497 16 O -0.584 6.584 17 C 0.056 3.944 18 H 0.096 0.904 19 C -0.113 4.113 20 C -0.118 4.118 21 C 0.036 3.964 22 N -0.535 5.535 23 C 0.023 3.977 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.027 0.973 32 H -0.017 1.017 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 20.178 4.850 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.327 5.327 6 C 0.152 3.848 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.793 3.207 12 H -0.189 1.189 13 H -0.193 1.193 14 H -0.209 1.209 15 C 0.291 3.709 16 O -0.464 6.464 17 C -0.056 4.056 18 H 0.114 0.886 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.091 4.091 22 N -0.260 5.260 23 C -0.125 4.125 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.045 0.955 32 H 0.001 0.999 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.437 19.283 3.918 20.703 hybrid contribution -0.083 -0.666 0.240 0.713 sum -6.520 18.617 4.158 20.159 Atomic orbital electron populations 1.22858 0.80028 1.03084 1.00821 1.88057 1.21177 1.28914 1.95502 1.23196 0.93515 0.84868 1.01589 1.21916 0.93202 1.00158 0.86709 1.48132 1.64730 1.07734 1.12146 1.18594 0.95542 0.75930 0.94710 1.21799 0.98281 0.92624 1.45195 0.92793 1.25904 1.01958 0.96404 0.95174 1.70093 1.36560 1.01371 1.49044 0.85356 0.78951 0.78408 0.78004 1.18858 1.19327 1.20882 1.21082 0.76948 0.89957 0.82879 1.90621 1.48032 1.76004 1.31710 1.22783 1.01169 0.89686 0.91917 0.88647 1.22496 0.94647 0.96600 1.01443 1.22413 1.01227 0.94987 0.96930 1.22980 0.99471 0.87172 0.99476 1.64264 1.25226 1.15518 1.21022 1.22458 0.88067 1.00915 1.01056 0.91711 0.93914 0.90153 0.88676 0.93440 0.90273 0.86153 0.95468 0.99923 0.92575 0.93288 0.87812 0.89906 0.87971 0.91279 0.90066 0.89709 0.94623 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.42 -14.50 9.53 -148.98 -1.42 -15.92 16 3 C 0.05 1.22 6.09 71.98 0.44 1.66 16 4 C 0.10 3.28 5.43 86.38 0.47 3.75 16 5 N -0.60 -26.87 2.42 -826.17 -2.00 -28.87 16 6 C 0.27 15.89 4.98 85.63 0.43 16.32 16 7 C -0.54 -32.85 9.39 25.60 0.24 -32.61 16 8 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 11 Si 0.97 46.85 29.54 68.60 2.03 48.87 16 12 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 15 C 0.50 22.59 6.71 87.66 0.59 23.18 16 16 O -0.58 -33.38 16.19 -3.02 -0.05 -33.43 16 17 C 0.06 1.71 1.69 44.51 0.08 1.78 16 18 H 0.10 2.30 6.04 -2.39 -0.01 2.29 16 19 C -0.11 -2.85 6.21 31.80 0.20 -2.65 16 20 C -0.12 -2.03 6.93 31.47 0.22 -1.81 16 21 C 0.04 0.72 6.70 86.45 0.58 1.30 16 22 N -0.54 -16.10 4.85 -888.59 -4.31 -20.42 16 23 C 0.02 0.62 9.29 127.69 1.19 1.81 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.20 7.33 -2.39 -0.02 1.19 16 29 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 30 H 0.12 2.77 5.33 -2.39 -0.01 2.76 16 31 H 0.03 1.65 7.12 -2.38 -0.02 1.63 16 32 H -0.02 -1.18 7.42 -2.39 -0.02 -1.20 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.05 1.58 8.05 -2.38 -0.02 1.56 16 35 H 0.10 2.01 7.00 -2.38 -0.02 1.99 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.04 7.73 -2.39 -0.02 1.02 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.18 8.01 -2.39 -0.02 1.16 16 42 H 0.05 1.02 8.00 -2.39 -0.02 1.01 16 Total: -1.00 -85.02 338.37 1.64 -83.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.98 Total: 10.06 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 6.13 Total: 15.37 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -6.03 Total: -108.34 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -1.47 Total: -49.35 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -85.02 1.64 -83.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610556185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.279 kcal (2) G-P(sol) polarization free energy of solvation -85.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds