Wall clock time and date at job start Mon Mar 30 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99969 * 2 1 4 4 C 1.53001 * 109.46900 * 90.00221 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 C 1.53003 * 117.49796 * 248.74870 * 7 4 3 9 9 C 1.52999 * 117.50160 * 180.08544 * 7 4 3 10 10 C 1.34777 * 120.00156 * 180.02562 * 2 1 3 11 11 O 1.21590 * 119.99972 * 179.97438 * 10 2 1 12 12 N 1.34774 * 119.99959 * 0.02562 * 10 2 1 13 13 C 1.46505 * 120.00023 * 179.97438 * 12 10 2 14 14 C 1.52995 * 109.47028 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46950 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46884 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00130 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99353 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00488 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99359 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47133 * 60.00073 * 20 18 16 22 22 H 1.48500 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47201 * 299.99748 * 20 18 16 24 24 H 1.08999 * 109.47279 * 89.99778 * 1 2 3 25 25 H 1.09004 * 109.47039 * 209.99535 * 1 2 3 26 26 H 1.08997 * 109.47422 * 329.99508 * 1 2 3 27 27 H 1.08999 * 109.47200 * 330.00257 * 3 2 1 28 28 H 1.08997 * 109.47487 * 210.00311 * 3 2 1 29 29 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 30 30 H 1.09002 * 115.54826 * 34.41110 * 7 4 3 31 31 H 1.09000 * 117.49626 * 359.97438 * 8 7 4 32 32 H 1.09000 * 117.49901 * 145.01813 * 8 7 4 33 33 H 1.08998 * 117.50055 * 214.97770 * 9 7 4 34 34 H 1.09001 * 117.49592 * 359.97370 * 9 7 4 35 35 H 0.97002 * 120.00409 * 359.97438 * 12 10 2 36 36 H 1.08997 * 109.47001 * 300.00001 * 13 12 10 37 37 H 1.08999 * 109.46545 * 60.00025 * 13 12 10 38 38 H 1.08997 * 109.47462 * 300.00003 * 14 13 12 39 39 H 1.08999 * 109.47206 * 60.00713 * 14 13 12 40 40 H 1.08997 * 109.46952 * 300.00208 * 15 14 13 41 41 H 1.08999 * 109.46672 * 60.00279 * 15 14 13 42 42 H 0.96996 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2169 3.0357 1.4427 8 6 4.6657 3.0156 1.9344 9 6 3.5719 3.6464 2.7998 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1671 -0.0010 12 7 1.4651 -2.3344 -0.0016 13 6 2.1976 -3.6031 -0.0027 14 6 1.2034 -4.7660 -0.0031 15 6 1.9685 -6.0910 -0.0036 16 6 0.9891 -7.2365 -0.0047 17 1 -0.0727 -7.0392 -0.0053 18 6 1.4489 -8.5364 -0.0048 19 7 2.7418 -8.7767 -0.0045 20 14 0.2349 -9.9562 -0.0053 21 1 -0.6185 -9.8774 -1.2180 22 1 0.9775 -11.2423 -0.0059 23 1 -0.6190 -9.8778 1.2070 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6084 2.0284 -0.5138 28 1 3.1499 1.1385 -0.5139 29 1 0.6267 2.5439 1.7127 30 1 2.9703 3.7207 0.6315 31 1 5.0740 2.0582 2.2582 32 1 5.3720 3.6877 1.4470 33 1 3.5591 4.7333 2.8814 34 1 3.2603 3.1042 3.6926 35 1 0.4951 -2.3345 -0.0016 36 1 2.8242 -3.6601 -0.8927 37 1 2.8242 -3.6616 0.8873 38 1 0.5771 -4.7089 0.8871 39 1 0.5765 -4.7078 -0.8928 40 1 2.5951 -6.1484 -0.8936 41 1 2.5951 -6.1491 0.8863 42 1 3.0652 -9.6912 -0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610707003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:32 Heat of formation + Delta-G solvation = -65.829495 kcal Electronic energy + Delta-G solvation = -20542.210795 eV Core-core repulsion = 17329.915145 eV Total energy + Delta-G solvation = -3212.295650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21347 -38.66434 -36.11512 -35.37459 -34.94879 -33.27100 -31.26786 -29.72682 -26.97259 -26.28069 -24.11534 -22.68437 -22.54383 -21.17634 -20.60088 -19.62370 -17.94488 -16.87460 -16.59483 -16.34963 -16.07891 -15.46266 -15.02377 -14.58232 -14.45195 -14.02661 -13.89235 -13.68433 -13.24263 -12.99086 -12.65895 -12.25232 -11.84531 -11.80056 -11.77291 -11.68395 -11.37439 -10.88281 -10.85448 -10.68279 -10.60479 -10.57616 -10.40188 -10.00902 -9.82993 -9.41338 -9.11504 -8.87085 -8.41453 -8.35006 -5.99759 -4.02880 2.69344 3.33336 3.34129 3.37982 3.39931 3.41375 4.06042 4.23913 4.29861 4.46129 4.57660 4.72876 4.78745 4.89259 4.98239 5.05631 5.31373 5.35814 5.37644 5.46449 5.55395 5.57220 5.67371 5.74624 5.84822 5.85326 5.93500 6.21737 6.38471 6.57084 6.65488 6.82484 7.03261 7.05303 7.38572 7.65886 7.79279 7.99199 8.09815 8.40165 8.76100 9.03622 9.61042 11.11553 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.002785 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.823336 B =10052.024279 C =10359.308683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.631 5.631 3 C 0.109 3.891 4 C 0.120 3.880 5 H 0.103 0.897 6 O -0.552 6.552 7 C -0.193 4.193 8 C -0.171 4.171 9 C -0.166 4.166 10 C 0.701 3.299 11 O -0.593 6.593 12 N -0.740 5.740 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.368 0.632 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 26.166 1.281 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.369 5.369 3 C -0.016 4.016 4 C 0.060 3.940 5 H 0.121 0.879 6 O -0.356 6.356 7 C -0.213 4.213 8 C -0.208 4.208 9 C -0.203 4.203 10 C 0.403 3.597 11 O -0.471 6.471 12 N -0.396 5.396 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.214 0.786 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.476 25.505 1.657 25.679 hybrid contribution -1.329 -0.375 -0.420 1.443 sum -3.805 25.130 1.237 25.447 Atomic orbital electron populations 1.21702 0.79806 1.03339 1.01124 1.46844 1.06283 1.04655 1.79088 1.21911 0.98574 0.84429 0.96652 1.22000 0.84589 0.94160 0.93290 0.87873 1.86669 1.28937 1.63129 1.56901 1.22983 0.99301 0.99887 0.99090 1.22982 0.90971 1.03208 1.03637 1.22858 1.03012 1.00098 0.94349 1.15966 0.85386 0.80476 0.77916 1.90903 1.11586 1.86296 1.58346 1.45523 1.09873 1.05153 1.79013 1.21514 0.95159 0.80416 1.01846 1.21887 0.97866 0.95285 1.00778 1.19022 0.95464 0.89152 0.97682 1.21172 0.92954 0.90958 1.51008 0.92710 1.25030 0.95129 0.99009 0.95298 1.69954 1.12535 1.20311 1.50505 0.86640 0.81122 0.81542 0.78570 1.20262 1.21280 1.20248 0.93038 0.91409 0.90730 0.90563 0.88751 0.78580 0.87629 0.88325 0.88600 0.88861 0.88396 0.77111 0.91963 0.91998 0.92800 0.92805 0.96252 0.96240 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.94 59.85 0.59 1.29 16 2 N -0.63 -7.44 2.80 -187.35 -0.52 -7.97 16 3 C 0.11 1.06 5.08 -4.04 -0.02 1.04 16 4 C 0.12 1.16 3.43 -26.73 -0.09 1.07 16 5 H 0.10 1.35 7.90 -51.93 -0.41 0.93 16 6 O -0.55 -5.04 11.97 -35.23 -0.42 -5.46 16 7 C -0.19 -1.49 5.36 -90.62 -0.49 -1.98 16 8 C -0.17 -1.39 10.18 -26.69 -0.27 -1.67 16 9 C -0.17 -1.27 10.16 -26.69 -0.27 -1.54 16 10 C 0.70 11.37 8.28 -86.92 -0.72 10.65 16 11 O -0.59 -11.87 15.92 5.29 0.08 -11.78 16 12 N -0.74 -11.53 5.42 -65.23 -0.35 -11.88 16 13 C 0.13 2.48 5.67 -4.04 -0.02 2.46 16 14 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.57 6.37 -51.93 -0.33 0.24 16 26 H 0.07 0.47 6.88 -51.93 -0.36 0.11 16 27 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 28 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 29 H 0.37 1.88 8.79 45.56 0.40 2.28 16 30 H 0.11 0.65 8.11 -51.93 -0.42 0.22 16 31 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.39 5.06 6.20 -40.82 -0.25 4.81 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -34.16 348.44 -8.59 -42.75 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.36 Total: 3.07 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.98 Total: -4.26 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.14 Total: -46.18 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.34 Total: -17.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.16 -8.59 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.082 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds