Wall clock time and date at job start Mon Mar 30 2020 01:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99969 * 2 1 4 4 C 1.53001 * 109.46900 * 90.00221 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 C 1.53003 * 117.49796 * 248.74870 * 7 4 3 9 9 C 1.52999 * 117.50160 * 180.08544 * 7 4 3 10 10 C 1.34777 * 120.00156 * 180.02562 * 2 1 3 11 11 O 1.21590 * 119.99972 * 179.97438 * 10 2 1 12 12 N 1.34774 * 119.99959 * 0.02562 * 10 2 1 13 13 C 1.46505 * 120.00023 * 179.97438 * 12 10 2 14 14 C 1.52995 * 109.47028 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46950 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46884 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00130 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99353 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00488 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99359 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47133 * 60.00073 * 20 18 16 22 22 H 1.48500 * 109.46994 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47201 * 299.99748 * 20 18 16 24 24 H 1.08999 * 109.47279 * 89.99778 * 1 2 3 25 25 H 1.09004 * 109.47039 * 209.99535 * 1 2 3 26 26 H 1.08997 * 109.47422 * 329.99508 * 1 2 3 27 27 H 1.08999 * 109.47200 * 330.00257 * 3 2 1 28 28 H 1.08997 * 109.47487 * 210.00311 * 3 2 1 29 29 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 30 30 H 1.09002 * 115.54826 * 34.41110 * 7 4 3 31 31 H 1.09000 * 117.49626 * 359.97438 * 8 7 4 32 32 H 1.09000 * 117.49901 * 145.01813 * 8 7 4 33 33 H 1.08998 * 117.50055 * 214.97770 * 9 7 4 34 34 H 1.09001 * 117.49592 * 359.97370 * 9 7 4 35 35 H 0.97002 * 120.00409 * 359.97438 * 12 10 2 36 36 H 1.08997 * 109.47001 * 300.00001 * 13 12 10 37 37 H 1.08999 * 109.46545 * 60.00025 * 13 12 10 38 38 H 1.08997 * 109.47462 * 300.00003 * 14 13 12 39 39 H 1.08999 * 109.47206 * 60.00713 * 14 13 12 40 40 H 1.08997 * 109.46952 * 300.00208 * 15 14 13 41 41 H 1.08999 * 109.46672 * 60.00279 * 15 14 13 42 42 H 0.96996 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2169 3.0357 1.4427 8 6 4.6657 3.0156 1.9344 9 6 3.5719 3.6464 2.7998 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1671 -0.0010 12 7 1.4651 -2.3344 -0.0016 13 6 2.1976 -3.6031 -0.0027 14 6 1.2034 -4.7660 -0.0031 15 6 1.9685 -6.0910 -0.0036 16 6 0.9891 -7.2365 -0.0047 17 1 -0.0727 -7.0392 -0.0053 18 6 1.4489 -8.5364 -0.0048 19 7 2.7418 -8.7767 -0.0045 20 14 0.2349 -9.9562 -0.0053 21 1 -0.6185 -9.8774 -1.2180 22 1 0.9775 -11.2423 -0.0059 23 1 -0.6190 -9.8778 1.2070 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6084 2.0284 -0.5138 28 1 3.1499 1.1385 -0.5139 29 1 0.6267 2.5439 1.7127 30 1 2.9703 3.7207 0.6315 31 1 5.0740 2.0582 2.2582 32 1 5.3720 3.6877 1.4470 33 1 3.5591 4.7333 2.8814 34 1 3.2603 3.1042 3.6926 35 1 0.4951 -2.3345 -0.0016 36 1 2.8242 -3.6601 -0.8927 37 1 2.8242 -3.6616 0.8873 38 1 0.5771 -4.7089 0.8871 39 1 0.5765 -4.7078 -0.8928 40 1 2.5951 -6.1484 -0.8936 41 1 2.5951 -6.1491 0.8863 42 1 3.0652 -9.6912 -0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610707003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:32 Heat of formation + Delta-G solvation = -90.360681 kcal Electronic energy + Delta-G solvation = -20543.274547 eV Core-core repulsion = 17329.915145 eV Total energy + Delta-G solvation = -3213.359402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.34319 -39.47711 -37.17048 -36.68797 -35.90445 -35.17265 -33.02053 -30.66382 -28.56977 -27.32356 -25.43278 -24.09527 -23.23543 -22.31268 -21.85086 -20.89193 -19.08469 -18.48370 -17.69936 -17.28125 -17.26767 -16.59266 -16.42772 -16.14690 -15.61240 -15.26416 -14.86068 -14.77580 -14.26354 -14.16954 -13.77123 -13.68750 -13.46591 -13.31260 -12.71550 -12.63332 -12.49948 -12.45108 -12.39360 -12.13012 -11.68376 -11.62847 -11.50013 -11.31616 -11.23436 -11.14344 -11.01538 -10.54752 -10.20962 -9.40802 -8.19091 -6.30962 1.41732 1.45243 1.52954 1.63515 2.09872 2.42239 2.76136 3.00600 3.14436 3.56896 3.59725 3.92704 4.00859 4.10097 4.16188 4.20913 4.22554 4.33741 4.40927 4.54279 4.68365 4.75833 4.77627 4.85857 4.93617 4.94386 4.98320 5.02188 5.15412 5.21588 5.27256 5.45904 5.51963 5.56109 5.70227 5.83745 5.89139 6.22332 6.85733 6.90124 6.95440 7.38540 7.53151 8.93019 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.002785 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.823336 B =10052.024279 C =10359.308683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.623 5.623 3 C 0.107 3.893 4 C 0.130 3.870 5 H 0.058 0.942 6 O -0.563 6.563 7 C -0.185 4.185 8 C -0.186 4.186 9 C -0.161 4.161 10 C 0.692 3.308 11 O -0.640 6.640 12 N -0.731 5.731 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.389 0.611 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.069 0.931 40 H -0.008 1.008 41 H -0.009 1.009 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 27.906 0.815 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.359 5.359 3 C -0.017 4.017 4 C 0.069 3.931 5 H 0.076 0.924 6 O -0.371 6.371 7 C -0.204 4.204 8 C -0.223 4.223 9 C -0.198 4.198 10 C 0.393 3.607 11 O -0.522 6.522 12 N -0.388 5.388 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.013 4.013 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.139 0.861 28 H 0.090 0.910 29 H 0.238 0.762 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.011 0.989 41 H 0.009 0.991 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.470 27.306 1.189 27.874 hybrid contribution -0.419 -0.848 -0.252 0.979 sum -5.890 26.458 0.937 27.122 Atomic orbital electron populations 1.22002 0.77174 1.04669 1.02769 1.46946 1.07911 1.03716 1.77364 1.22103 0.98370 0.84363 0.96851 1.21662 0.84808 0.94103 0.92522 0.92378 1.86632 1.28925 1.64211 1.57290 1.22993 0.98259 0.99172 0.99987 1.23019 0.91817 1.02740 1.04716 1.22882 1.02150 1.01024 0.93705 1.16229 0.84989 0.81613 0.77846 1.90870 1.13858 1.87116 1.60377 1.45195 1.10475 1.04064 1.79107 1.21074 0.94624 0.81588 1.00294 1.21582 0.97448 0.92638 1.02063 1.18934 0.95174 0.92177 0.95051 1.21651 0.93870 0.91847 1.50608 0.91451 1.26049 0.97064 1.02327 0.94739 1.70109 1.14849 1.21048 1.51613 0.85446 0.78559 0.77400 0.79304 1.18917 1.21171 1.19006 0.91146 0.91563 0.88024 0.86126 0.90973 0.76183 0.84870 0.90562 0.87122 0.86797 0.89875 0.75232 0.93474 0.93880 0.91511 0.91246 0.98913 0.99066 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.94 127.77 1.27 2.27 16 2 N -0.62 -13.75 2.80 -864.92 -2.42 -16.16 16 3 C 0.11 1.89 5.08 86.38 0.44 2.33 16 4 C 0.13 2.40 3.43 30.60 0.11 2.50 16 5 H 0.06 1.61 7.90 -2.39 -0.02 1.60 16 6 O -0.56 -9.08 11.97 -148.98 -1.78 -10.86 16 7 C -0.19 -2.55 5.36 -10.79 -0.06 -2.61 16 8 C -0.19 -3.00 10.18 30.62 0.31 -2.69 16 9 C -0.16 -2.25 10.16 30.62 0.31 -1.94 16 10 C 0.69 22.51 8.28 179.05 1.48 24.00 16 11 O -0.64 -26.73 15.92 -4.00 -0.06 -26.79 16 12 N -0.73 -22.47 5.42 -478.54 -2.59 -25.06 16 13 C 0.15 5.66 5.67 86.38 0.49 6.15 16 14 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 20 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.92 6.37 -2.38 -0.02 0.91 16 26 H 0.10 0.83 6.88 -2.39 -0.02 0.81 16 27 H 0.12 1.09 8.07 -2.39 -0.02 1.07 16 28 H 0.07 1.65 7.42 -2.39 -0.02 1.63 16 29 H 0.39 2.52 8.79 -74.06 -0.65 1.87 16 30 H 0.13 1.14 8.11 -2.39 -0.02 1.12 16 31 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 9.81 6.20 -92.71 -0.58 9.23 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.00 348.44 0.59 -76.41 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.22 Total: 16.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.36 Total: -2.53 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -4.73 Total: -98.89 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.85 Total: -37.65 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.00 0.59 -76.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610707003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.952 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds