Wall clock time and date at job start Mon Mar 30 2020 01:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47094 * 2 1 4 4 C 1.42900 * 113.99916 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.49545 * 329.93791 * 4 3 2 6 6 C 1.53097 * 109.48967 * 209.85710 * 4 3 2 7 7 C 1.53038 * 109.50348 * 178.70344 * 6 4 3 8 8 C 1.53192 * 109.34407 * 61.34583 * 7 6 4 9 9 N 1.46925 * 108.77030 * 305.35145 * 8 7 6 10 10 C 1.34779 * 120.62701 * 233.57936 * 9 8 7 11 11 O 1.21595 * 119.99576 * 174.77858 * 10 9 8 12 12 N 1.34771 * 120.00345 * 354.77770 * 10 9 8 13 13 C 1.46499 * 120.00038 * 184.98086 * 12 10 9 14 14 C 1.53005 * 109.46914 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.47096 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99652 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99757 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47464 * 59.99677 * 19 17 15 21 21 H 1.48504 * 109.47447 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47167 * 299.99682 * 19 17 15 23 23 C 1.46926 * 118.74047 * 53.60860 * 9 8 7 24 24 H 1.09007 * 109.47306 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46912 * 299.99691 * 1 2 3 26 26 H 1.09003 * 109.47422 * 59.99736 * 1 2 3 27 27 H 1.09001 * 109.47096 * 239.99791 * 2 1 3 28 28 H 1.09005 * 109.46922 * 120.00140 * 2 1 3 29 29 H 1.08998 * 109.50689 * 58.67201 * 6 4 3 30 30 H 1.09003 * 109.45090 * 298.68961 * 6 4 3 31 31 H 1.09007 * 109.49943 * 301.37502 * 7 6 4 32 32 H 1.09004 * 109.50346 * 181.31740 * 7 6 4 33 33 H 1.09001 * 109.58364 * 65.13569 * 8 7 6 34 34 H 1.09002 * 109.59105 * 185.42260 * 8 7 6 35 35 H 0.96999 * 119.99989 * 4.98524 * 12 10 9 36 36 H 1.09007 * 109.47104 * 299.99775 * 13 12 10 37 37 H 1.08998 * 109.47532 * 60.00528 * 13 12 10 38 38 H 1.08998 * 109.46989 * 299.99677 * 14 13 12 39 39 H 1.08996 * 109.47346 * 59.99951 * 14 13 12 40 40 H 0.97003 * 120.00120 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.58624 * 66.17595 * 23 9 8 42 42 H 1.09004 * 109.58763 * 186.45670 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6023 0.5156 6 6 3.8410 2.7483 0.7191 7 6 5.3675 2.8533 0.7483 8 6 5.8998 2.9093 -0.6871 9 7 5.3895 1.7465 -1.4263 10 6 6.2341 0.9219 -2.0768 11 8 5.8109 -0.0884 -2.6048 12 7 7.5474 1.2170 -2.1422 13 6 8.4473 0.3806 -2.9401 14 6 9.8724 0.9294 -2.8446 15 6 10.7981 0.0693 -3.6659 16 1 10.4089 -0.7837 -4.2020 17 6 12.1418 0.3707 -3.7320 18 7 12.6157 1.4091 -3.0787 19 14 13.2890 -0.6949 -4.7506 20 1 12.8482 -0.6818 -6.1687 21 1 14.6722 -0.1624 -4.6578 22 1 13.2587 -2.0874 -4.2357 23 6 3.9412 1.5002 -1.4433 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.4584 2.7335 1.7396 30 1 3.4281 3.6067 0.1891 31 1 5.7824 1.9828 1.2565 32 1 5.6599 3.7587 1.2802 33 1 5.5587 3.8263 -1.1678 34 1 6.9895 2.8871 -0.6739 35 1 7.8969 1.9833 -1.6609 36 1 8.4256 -0.6411 -2.5607 37 1 8.1236 0.3887 -3.9809 38 1 9.8944 1.9511 -3.2237 39 1 10.1959 0.9210 -1.8038 40 1 13.5610 1.6215 -3.1255 41 1 3.4405 2.3023 -1.9856 42 1 3.7383 0.5470 -1.9314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612161884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:38 Heat of formation + Delta-G solvation = -88.985365 kcal Electronic energy + Delta-G solvation = -20956.859671 eV Core-core repulsion = 17743.559907 eV Total energy + Delta-G solvation = -3213.299764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30970 -38.60369 -36.61538 -34.89728 -33.06272 -32.54886 -31.63697 -30.08089 -29.04122 -25.70978 -24.30467 -23.50657 -22.64291 -21.33728 -20.80869 -19.41621 -18.05047 -16.78737 -16.49826 -16.18817 -15.61915 -15.33591 -14.93130 -14.59850 -14.47785 -14.00668 -13.70081 -13.53301 -13.30779 -13.18486 -12.79207 -12.48756 -12.35267 -12.24170 -11.73765 -11.36274 -11.30452 -11.21077 -11.04802 -11.00395 -10.71276 -10.64242 -10.31731 -9.92095 -9.84290 -9.53884 -9.27447 -8.72497 -8.45116 -8.18517 -6.08915 -4.11566 2.78388 3.31757 3.35389 3.38724 3.44116 3.54699 4.22686 4.43970 4.58601 4.63089 4.74018 4.78424 4.89109 4.97097 5.03265 5.15283 5.26496 5.28141 5.36294 5.50486 5.57797 5.63752 5.64852 5.66561 5.73655 5.85032 5.92075 6.02456 6.26280 6.40042 6.51234 6.77276 6.99330 7.03495 7.16008 7.55496 7.63202 7.90030 8.24462 8.36544 8.91690 8.97193 9.53095 11.02764 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037094 B = 0.003186 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.658401 B = 8785.348370 C = 9364.942583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.381 6.381 4 C 0.077 3.923 5 H 0.064 0.936 6 C -0.114 4.114 7 C -0.132 4.132 8 C 0.108 3.892 9 N -0.632 5.632 10 C 0.703 3.297 11 O -0.596 6.596 12 N -0.738 5.738 13 C 0.139 3.861 14 C 0.014 3.986 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.112 3.888 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.392 0.608 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.069 0.931 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 3.951 9.536 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.300 6.300 4 C 0.018 3.982 5 H 0.082 0.918 6 C -0.151 4.151 7 C -0.171 4.171 8 C -0.015 4.015 9 N -0.373 5.373 10 C 0.404 3.596 11 O -0.475 6.475 12 N -0.393 5.393 13 C 0.016 3.984 14 C -0.024 4.024 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.013 4.013 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.228 0.772 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.974 3.445 9.141 22.235 hybrid contribution 1.081 -0.335 -0.252 1.160 sum -18.893 3.110 8.889 21.110 Atomic orbital electron populations 1.21740 0.93741 1.02243 1.02996 1.22552 0.95485 0.83770 1.00456 1.87885 1.20447 1.26583 1.95036 1.22467 0.81009 0.98809 0.95901 0.91757 1.21572 0.95496 0.97093 1.00965 1.21922 0.95070 1.03242 0.96859 1.21662 0.99398 0.88805 0.91660 1.47182 1.06092 1.28582 1.55400 1.15957 0.81573 0.82664 0.79362 1.90872 1.76924 1.26871 1.52857 1.45706 1.06048 1.33701 1.53860 1.21613 0.90144 0.93366 0.93278 1.19316 0.88172 0.96994 0.97899 1.21015 0.92607 1.12544 1.29810 0.92266 1.24992 0.98280 0.95320 0.95695 1.69948 1.14256 1.26977 1.42206 0.86563 0.79556 0.80624 0.80733 1.20105 1.21256 1.20109 1.21797 0.79377 1.03483 0.96595 0.91127 0.92000 0.91805 0.92967 0.93383 0.91073 0.90847 0.91174 0.89869 0.91175 0.89769 0.77166 0.92722 0.92814 0.95994 0.96004 0.92804 0.91243 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.38 -4.20 9.99 -35.23 -0.35 -4.56 16 4 C 0.08 0.84 2.76 -26.58 -0.07 0.76 16 5 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 6 C -0.11 -1.02 5.54 -26.66 -0.15 -1.16 16 7 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 8 C 0.11 1.13 6.38 -3.71 -0.02 1.11 16 9 N -0.63 -8.86 2.97 -178.50 -0.53 -9.39 16 10 C 0.70 12.91 8.29 -86.92 -0.72 12.19 16 11 O -0.60 -13.18 15.77 5.28 0.08 -13.09 16 12 N -0.74 -13.52 5.46 -65.22 -0.36 -13.87 16 13 C 0.14 3.03 5.62 -4.04 -0.02 3.01 16 14 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 15 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.11 1.43 6.06 -3.71 -0.02 1.40 16 24 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.51 8.03 -51.93 -0.42 0.09 16 28 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.87 5.66 -51.93 -0.29 0.58 16 35 H 0.39 6.24 5.96 -40.82 -0.24 5.99 16 36 H 0.05 1.25 8.14 -51.92 -0.42 0.82 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.37 6.88 -51.93 -0.36 1.01 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -32.29 339.78 -8.60 -40.89 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.17 Total: 0.95 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.10 Total: 2.94 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.15 Total: -48.67 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.27 Total: -17.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.29 -8.60 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612161884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.100 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds