Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00024 * 2 1 4 4 C 1.50705 * 109.46754 * 293.95047 * 3 2 1 5 5 O 1.21282 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99928 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00320 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47395 * 179.97438 * 7 6 4 9 9 H 1.07994 * 119.99603 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99838 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00380 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99776 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99769 * 12 10 8 16 16 C 1.46901 * 110.99828 * 123.94849 * 2 1 3 17 17 C 1.53002 * 109.46784 * 66.04681 * 16 2 1 18 18 H 1.08996 * 110.01881 * 305.06225 * 17 16 2 19 19 C 1.54267 * 110.03265 * 66.45487 * 17 16 2 20 20 C 1.54889 * 104.19774 * 142.88928 * 19 17 16 21 21 C 1.54887 * 102.74890 * 322.05925 * 20 19 17 22 22 C 1.53874 * 110.03139 * 183.61604 * 17 16 2 23 23 H 1.09001 * 110.03192 * 121.43083 * 22 17 16 24 24 O 1.42905 * 110.03073 * 0.02562 * 22 17 16 25 25 H 1.09002 * 109.46745 * 60.00215 * 1 2 3 26 26 H 1.08998 * 109.46737 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47149 * 300.00322 * 1 2 3 28 28 H 1.08999 * 109.46924 * 173.95319 * 3 2 1 29 29 H 1.08998 * 109.47251 * 53.94981 * 3 2 1 30 30 H 0.97006 * 119.99735 * 359.97438 * 6 4 3 31 31 H 1.09005 * 109.47411 * 59.99731 * 7 6 4 32 32 H 1.08998 * 109.46900 * 299.99810 * 7 6 4 33 33 H 0.97001 * 119.99667 * 0.02562 * 11 10 8 34 34 H 1.09004 * 109.47101 * 186.04382 * 16 2 1 35 35 H 1.09000 * 109.47169 * 306.04952 * 16 2 1 36 36 H 1.09003 * 110.48821 * 261.57338 * 19 17 16 37 37 H 1.09005 * 110.48394 * 24.21303 * 19 17 16 38 38 H 1.09004 * 110.75370 * 80.37516 * 20 19 17 39 39 H 1.08997 * 110.75635 * 203.73985 * 20 19 17 40 40 H 1.09002 * 110.48493 * 156.61701 * 21 20 19 41 41 H 1.08996 * 110.48913 * 279.12809 * 21 20 19 42 42 H 0.96704 * 113.99652 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 8 1.0048 1.4455 -2.1408 6 7 2.0189 3.3197 -1.5239 7 6 1.6700 3.9767 -2.7859 8 6 2.2102 5.3836 -2.7860 9 1 2.7582 5.7517 -1.9313 10 6 2.0038 6.2012 -3.8769 11 7 1.3361 5.7532 -4.9175 12 14 2.6740 7.9448 -3.8773 13 1 3.3830 8.2030 -2.5982 14 1 1.5518 8.9064 -4.0235 15 1 3.6194 8.1116 -5.0102 16 6 1.9955 -0.7659 1.1377 17 6 1.6314 -2.2425 0.9705 18 1 0.5544 -2.3490 0.8415 19 6 2.3705 -2.8344 -0.2474 20 6 2.7344 -4.2744 0.1920 21 6 3.1042 -4.0930 1.6851 22 6 2.0979 -3.0428 2.1992 23 1 1.2472 -3.5384 2.6669 24 8 2.7342 -2.1726 3.1373 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.0798 1.3444 0.1083 29 1 1.5611 1.9274 0.8308 30 1 2.5243 3.8010 -0.8501 31 1 0.5857 4.0043 -2.8936 32 1 2.1037 3.4206 -3.6170 33 1 0.9884 4.8476 -4.9174 34 1 3.0798 -0.6610 1.1757 35 1 1.5611 -0.3871 2.0628 36 1 1.7152 -2.8553 -1.1182 37 1 3.2728 -2.2614 -0.4615 38 1 1.8774 -4.9393 0.0843 39 1 3.5875 -4.6473 -0.3747 40 1 2.9842 -5.0324 2.2247 41 1 4.1256 -3.7255 1.7833 42 1 3.0506 -2.6183 3.9351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689259057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -98.182694 kcal Electronic energy + Delta-G solvation = -20970.499559 eV Core-core repulsion = 17756.800968 eV Total energy + Delta-G solvation = -3213.698590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.66805 -38.84628 -36.46142 -35.07202 -34.28883 -32.39846 -30.46716 -28.30413 -27.77705 -26.53734 -25.47170 -22.86129 -21.78612 -21.05859 -19.71570 -19.53394 -17.69881 -17.33525 -16.19874 -16.03953 -15.50499 -15.10506 -14.72765 -14.54574 -14.37412 -13.85474 -13.82988 -13.60509 -13.26450 -12.63998 -12.40475 -12.31319 -12.20637 -11.90474 -11.60359 -11.37039 -11.22129 -11.13617 -10.97953 -10.86390 -10.74116 -10.72693 -10.67665 -10.18236 -10.07293 -9.07915 -8.75789 -8.65048 -8.12824 -7.92452 -6.49945 -4.23152 3.35875 3.38637 3.43346 3.55265 3.67849 3.96479 4.28372 4.36694 4.45718 4.52112 4.72666 5.00731 5.08196 5.23868 5.27307 5.29021 5.36646 5.42698 5.44024 5.50828 5.57488 5.61370 5.66081 5.72691 5.81579 5.85098 5.96246 6.02603 6.18779 6.27833 6.36769 6.98180 7.11366 7.20125 7.25689 7.38824 7.40761 7.70047 8.30258 8.51898 8.74700 9.06737 9.50923 10.90424 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041446 B = 0.003052 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.415550 B = 9172.533904 C = 9350.830382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.038 3.962 4 C 0.500 3.500 5 O -0.540 6.540 6 N -0.711 5.711 7 C 0.241 3.759 8 C -0.622 4.622 9 H 0.057 0.943 10 C 0.021 3.979 11 N -0.904 5.904 12 Si 1.081 2.919 13 H -0.288 1.288 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.077 3.923 17 C -0.082 4.082 18 H 0.080 0.920 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.157 4.157 22 C 0.104 3.896 23 H 0.056 0.944 24 O -0.561 6.561 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.392 0.608 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.273 0.727 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -18.201 16.904 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.247 5.247 3 C -0.094 4.094 4 C 0.284 3.716 5 O -0.418 6.418 6 N -0.361 5.361 7 C 0.120 3.880 8 C -0.661 4.661 9 H 0.076 0.924 10 C -0.184 4.184 11 N -0.539 5.539 12 Si 0.909 3.091 13 H -0.214 1.214 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.051 4.051 17 C -0.101 4.101 18 H 0.098 0.902 19 C -0.143 4.143 20 C -0.165 4.165 21 C -0.195 4.195 22 C 0.044 3.956 23 H 0.074 0.926 24 O -0.367 6.367 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.224 0.776 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.468 -17.014 14.473 22.473 hybrid contribution 0.002 -1.267 2.482 2.787 sum 2.470 -18.280 16.955 25.055 Atomic orbital electron populations 1.22591 0.87021 1.01786 1.01627 1.61633 1.08520 1.11836 1.42735 1.21979 1.01574 0.89838 0.95973 1.20396 0.80420 0.82234 0.88559 1.90608 1.40198 1.64336 1.46688 1.46273 1.55879 1.12532 1.21377 1.19135 0.95612 0.92381 0.80884 1.22129 1.40290 0.97715 1.05925 0.92430 1.25881 0.95165 1.05388 0.91985 1.70695 1.33038 1.19736 1.30389 0.83372 0.76213 0.74008 0.75495 1.21440 1.21175 1.21139 1.21877 1.00348 0.92119 0.90762 1.21848 1.00309 0.94744 0.93226 0.90224 1.22290 1.00736 0.94175 0.97084 1.22474 1.01135 0.97827 0.95050 1.23106 1.00282 0.98817 0.97261 1.22520 0.93642 0.89815 0.89598 0.92630 1.86595 1.79185 1.38099 1.32777 0.89114 0.91762 0.96549 0.88470 0.92556 0.77578 0.96701 0.96574 0.91624 0.90508 0.94473 0.90980 0.90974 0.91593 0.91395 0.91778 0.90569 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.02 60.07 0.54 0.80 16 2 N -0.52 -7.82 4.29 -244.36 -1.05 -8.87 16 3 C 0.04 0.58 5.45 -4.97 -0.03 0.55 16 4 C 0.50 10.24 7.56 -10.98 -0.08 10.16 16 5 O -0.54 -13.07 14.31 5.56 0.08 -12.99 16 6 N -0.71 -15.44 5.55 -61.47 -0.34 -15.78 16 7 C 0.24 6.49 4.74 -5.19 -0.02 6.46 16 8 C -0.62 -17.37 9.28 -34.44 -0.32 -17.69 16 9 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 10 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 11 N -0.90 -27.69 13.65 55.43 0.76 -26.94 16 12 Si 1.08 24.79 29.90 -169.99 -5.08 19.71 16 13 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.08 0.95 3.28 -3.82 -0.01 0.93 16 17 C -0.08 -0.87 2.86 -89.50 -0.26 -1.13 16 18 H 0.08 0.84 6.30 -51.93 -0.33 0.52 16 19 C -0.11 -1.13 6.16 -25.07 -0.15 -1.28 16 20 C -0.13 -1.05 6.91 -24.74 -0.17 -1.22 16 21 C -0.16 -1.16 6.55 -25.08 -0.16 -1.32 16 22 C 0.10 0.87 4.24 -25.62 -0.11 0.76 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 O -0.56 -4.84 11.43 -35.23 -0.40 -5.25 16 25 H 0.09 1.63 5.88 -51.93 -0.31 1.32 16 26 H 0.06 0.83 6.22 -51.93 -0.32 0.50 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 1.33 7.93 -51.93 -0.41 0.91 16 29 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.39 7.39 8.32 -40.82 -0.34 7.05 16 31 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 32 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 33 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 34 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 35 H 0.04 0.47 7.69 -51.93 -0.40 0.07 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.86 7.78 -51.93 -0.40 0.46 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.37 1.66 9.11 45.56 0.42 2.08 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -33.50 334.75 -8.06 -41.56 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.19 Total: 5.95 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.88 Total: -2.45 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.63 Total: -51.58 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.32 Total: -18.24 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.50 -8.06 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689259057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.619 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds