Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00024 * 2 1 4 4 C 1.50705 * 109.46754 * 293.95047 * 3 2 1 5 5 O 1.21282 * 119.99974 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99928 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00320 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47395 * 179.97438 * 7 6 4 9 9 H 1.07994 * 119.99603 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99838 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00380 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99776 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99769 * 12 10 8 16 16 C 1.46901 * 110.99828 * 123.94849 * 2 1 3 17 17 C 1.53002 * 109.46784 * 66.04681 * 16 2 1 18 18 H 1.08996 * 110.01881 * 305.06225 * 17 16 2 19 19 C 1.54267 * 110.03265 * 66.45487 * 17 16 2 20 20 C 1.54889 * 104.19774 * 142.88928 * 19 17 16 21 21 C 1.54887 * 102.74890 * 322.05925 * 20 19 17 22 22 C 1.53874 * 110.03139 * 183.61604 * 17 16 2 23 23 H 1.09001 * 110.03192 * 121.43083 * 22 17 16 24 24 O 1.42905 * 110.03073 * 0.02562 * 22 17 16 25 25 H 1.09002 * 109.46745 * 60.00215 * 1 2 3 26 26 H 1.08998 * 109.46737 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47149 * 300.00322 * 1 2 3 28 28 H 1.08999 * 109.46924 * 173.95319 * 3 2 1 29 29 H 1.08998 * 109.47251 * 53.94981 * 3 2 1 30 30 H 0.97006 * 119.99735 * 359.97438 * 6 4 3 31 31 H 1.09005 * 109.47411 * 59.99731 * 7 6 4 32 32 H 1.08998 * 109.46900 * 299.99810 * 7 6 4 33 33 H 0.97001 * 119.99667 * 0.02562 * 11 10 8 34 34 H 1.09004 * 109.47101 * 186.04382 * 16 2 1 35 35 H 1.09000 * 109.47169 * 306.04952 * 16 2 1 36 36 H 1.09003 * 110.48821 * 261.57338 * 19 17 16 37 37 H 1.09005 * 110.48394 * 24.21303 * 19 17 16 38 38 H 1.09004 * 110.75370 * 80.37516 * 20 19 17 39 39 H 1.08997 * 110.75635 * 203.73985 * 20 19 17 40 40 H 1.09002 * 110.48493 * 156.61701 * 21 20 19 41 41 H 1.08996 * 110.48913 * 279.12809 * 21 20 19 42 42 H 0.96704 * 113.99652 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 8 1.0048 1.4455 -2.1408 6 7 2.0189 3.3197 -1.5239 7 6 1.6700 3.9767 -2.7859 8 6 2.2102 5.3836 -2.7860 9 1 2.7582 5.7517 -1.9313 10 6 2.0038 6.2012 -3.8769 11 7 1.3361 5.7532 -4.9175 12 14 2.6740 7.9448 -3.8773 13 1 3.3830 8.2030 -2.5982 14 1 1.5518 8.9064 -4.0235 15 1 3.6194 8.1116 -5.0102 16 6 1.9955 -0.7659 1.1377 17 6 1.6314 -2.2425 0.9705 18 1 0.5544 -2.3490 0.8415 19 6 2.3705 -2.8344 -0.2474 20 6 2.7344 -4.2744 0.1920 21 6 3.1042 -4.0930 1.6851 22 6 2.0979 -3.0428 2.1992 23 1 1.2472 -3.5384 2.6669 24 8 2.7342 -2.1726 3.1373 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.0798 1.3444 0.1083 29 1 1.5611 1.9274 0.8308 30 1 2.5243 3.8010 -0.8501 31 1 0.5857 4.0043 -2.8936 32 1 2.1037 3.4206 -3.6170 33 1 0.9884 4.8476 -4.9174 34 1 3.0798 -0.6610 1.1757 35 1 1.5611 -0.3871 2.0628 36 1 1.7152 -2.8553 -1.1182 37 1 3.2728 -2.2614 -0.4615 38 1 1.8774 -4.9393 0.0843 39 1 3.5875 -4.6473 -0.3747 40 1 2.9842 -5.0324 2.2247 41 1 4.1256 -3.7255 1.7833 42 1 3.0506 -2.6183 3.9351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689259057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = -125.035017 kcal Electronic energy + Delta-G solvation = -20971.663963 eV Core-core repulsion = 17756.800968 eV Total energy + Delta-G solvation = -3214.862994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90897 -40.03840 -37.63520 -36.33725 -35.74221 -34.45396 -31.45801 -29.80285 -28.47137 -28.19418 -26.72957 -24.80090 -23.05383 -21.75360 -21.35225 -20.42574 -19.36739 -18.45194 -17.66779 -17.13896 -16.82095 -16.57280 -15.81026 -15.67707 -15.63681 -15.48569 -15.03288 -14.71053 -14.47552 -14.35021 -14.11409 -13.89180 -13.25878 -13.10623 -12.88650 -12.76391 -12.63710 -12.49949 -12.11702 -11.90880 -11.87360 -11.71970 -11.49336 -11.42602 -10.98807 -10.77701 -10.73052 -10.66983 -9.94881 -9.26839 -8.80821 -6.56126 1.55097 1.64726 1.69846 1.80876 2.23612 2.55577 3.02705 3.07426 3.37282 3.65210 3.74095 3.87269 3.93695 4.20865 4.27343 4.31023 4.40522 4.45703 4.49361 4.56792 4.63225 4.68108 4.78377 4.82137 4.90175 4.95470 5.00792 5.04834 5.07577 5.21625 5.32377 5.36056 5.46924 5.48620 5.53726 5.91758 6.08556 6.12247 6.31055 6.82464 6.98445 7.24475 7.43327 8.58592 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041446 B = 0.003052 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.415550 B = 9172.533904 C = 9350.830382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.051 3.949 4 C 0.496 3.504 5 O -0.582 6.582 6 N -0.707 5.707 7 C 0.255 3.745 8 C -0.629 4.629 9 H 0.076 0.924 10 C -0.034 4.034 11 N -0.931 5.931 12 Si 1.135 2.865 13 H -0.259 1.259 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.086 3.914 17 C -0.086 4.086 18 H 0.078 0.922 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.071 0.929 24 O -0.578 6.578 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.408 0.592 31 H -0.018 1.018 32 H -0.019 1.019 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 -18.406 19.672 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.080 4.080 4 C 0.283 3.717 5 O -0.462 6.462 6 N -0.358 5.358 7 C 0.132 3.868 8 C -0.666 4.666 9 H 0.094 0.906 10 C -0.232 4.232 11 N -0.567 5.567 12 Si 0.955 3.045 13 H -0.183 1.183 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.041 4.041 17 C -0.105 4.105 18 H 0.096 0.904 19 C -0.145 4.145 20 C -0.161 4.161 21 C -0.187 4.187 22 C 0.049 3.951 23 H 0.089 0.911 24 O -0.386 6.386 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.244 0.756 31 H 0.000 1.000 32 H -0.001 1.001 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.752 -17.258 17.310 24.729 hybrid contribution -0.414 -1.292 1.633 2.123 sum 3.338 -18.550 18.943 26.722 Atomic orbital electron populations 1.22463 0.87178 1.02499 1.00313 1.61601 1.08604 1.11743 1.44618 1.21914 1.03150 0.90048 0.92932 1.21392 0.78916 0.81434 0.89959 1.90598 1.41798 1.65140 1.48656 1.46055 1.56446 1.13264 1.20057 1.18635 0.93266 0.92561 0.82354 1.22484 1.39822 0.97818 1.06488 0.90609 1.27676 0.94422 1.09766 0.91372 1.70848 1.35058 1.18855 1.31916 0.82726 0.76063 0.68723 0.77019 1.18349 1.20488 1.20486 1.21839 0.99980 0.92737 0.89555 1.21888 1.00256 0.93917 0.94434 0.90370 1.22238 0.99592 0.95914 0.96760 1.22465 1.01640 0.96148 0.95895 1.23059 0.99726 0.99480 0.96431 1.22450 0.94427 0.89406 0.88790 0.91113 1.86534 1.79342 1.38923 1.33797 0.92850 0.90153 0.95229 0.86024 0.90046 0.75594 1.00033 1.00068 0.93675 0.90673 0.94214 0.92837 0.92693 0.90675 0.91116 0.89649 0.90958 0.75824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.02 127.69 1.15 1.84 16 2 N -0.54 -15.72 4.29 -927.02 -3.97 -19.69 16 3 C 0.05 1.48 5.45 85.56 0.47 1.95 16 4 C 0.50 20.57 7.56 87.66 0.66 21.23 16 5 O -0.58 -29.37 14.31 -3.04 -0.04 -29.41 16 6 N -0.71 -30.92 5.55 -466.79 -2.59 -33.51 16 7 C 0.26 14.26 4.74 85.63 0.41 14.66 16 8 C -0.63 -35.18 9.28 25.60 0.24 -34.94 16 9 H 0.08 3.90 7.60 -2.91 -0.02 3.87 16 10 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 11 N -0.93 -58.61 13.65 21.45 0.29 -58.32 16 12 Si 1.14 48.76 29.90 68.60 2.05 50.81 16 13 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 14 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.09 1.96 3.28 86.30 0.28 2.25 16 17 C -0.09 -1.68 2.86 -10.07 -0.03 -1.71 16 18 H 0.08 1.54 6.30 -2.39 -0.02 1.53 16 19 C -0.11 -2.24 6.16 31.67 0.20 -2.05 16 20 C -0.12 -1.84 6.91 31.88 0.22 -1.62 16 21 C -0.15 -1.80 6.55 31.67 0.21 -1.59 16 22 C 0.11 1.53 4.24 31.32 0.13 1.66 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 O -0.58 -8.30 11.43 -148.98 -1.70 -10.00 16 25 H 0.05 1.98 5.88 -2.39 -0.01 1.96 16 26 H 0.08 2.03 6.22 -2.39 -0.01 2.02 16 27 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 29 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 30 H 0.41 14.92 8.32 -92.70 -0.77 14.15 16 31 H -0.02 -1.12 8.01 -2.38 -0.02 -1.14 16 32 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 33 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 34 H 0.07 1.76 7.69 -2.38 -0.02 1.74 16 35 H 0.04 0.91 7.69 -2.39 -0.02 0.89 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.32 7.78 -2.38 -0.02 1.30 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 42 H 0.39 2.26 9.11 -74.05 -0.67 1.58 16 Total: -1.00 -75.05 334.75 -1.90 -76.95 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.33 Total: 22.99 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 4.40 Total: 0.19 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -6.27 Total: -111.53 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.75 Total: -39.42 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -75.05 -1.90 -76.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689259057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.081 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds