Wall clock time and date at job start Mon Mar 30 2020 01:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99780 * 2 1 4 4 C 1.50704 * 109.47095 * 293.95177 * 3 2 1 5 5 O 1.21286 * 119.99702 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00199 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00265 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47721 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99688 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00358 * 179.72663 * 8 7 6 11 11 N 1.31507 * 120.00092 * 0.27195 * 10 8 7 12 12 Si 1.86802 * 119.99663 * 180.27322 * 10 8 7 13 13 H 1.48498 * 109.47144 * 90.00133 * 12 10 8 14 14 H 1.48504 * 109.46916 * 209.99642 * 12 10 8 15 15 H 1.48494 * 109.47437 * 329.99785 * 12 10 8 16 16 C 1.46897 * 111.00200 * 123.95238 * 2 1 3 17 17 C 1.52998 * 109.47273 * 160.39732 * 16 2 1 18 18 H 1.08995 * 110.43724 * 58.15621 * 17 16 2 19 19 C 1.54266 * 110.48501 * 295.61339 * 17 16 2 20 20 C 1.53864 * 106.60226 * 217.71294 * 19 17 16 21 21 C 1.54265 * 106.59932 * 359.97438 * 20 19 17 22 22 C 1.54889 * 110.48470 * 180.84300 * 17 16 2 23 23 H 1.08997 * 110.75837 * 38.30355 * 22 17 16 24 24 O 1.42899 * 110.75488 * 274.93183 * 22 17 16 25 25 H 1.09000 * 109.47403 * 65.75077 * 1 2 3 26 26 H 1.09001 * 109.46887 * 185.75487 * 1 2 3 27 27 H 1.09002 * 109.47120 * 305.74868 * 1 2 3 28 28 H 1.09002 * 109.47233 * 173.95782 * 3 2 1 29 29 H 1.08990 * 109.47541 * 53.95461 * 3 2 1 30 30 H 0.96997 * 120.00282 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47328 * 59.99910 * 7 6 4 32 32 H 1.09003 * 109.47517 * 300.00068 * 7 6 4 33 33 H 0.97000 * 120.00182 * 180.02562 * 11 10 8 34 34 H 1.09004 * 109.47191 * 280.39836 * 16 2 1 35 35 H 1.08998 * 109.47024 * 40.39375 * 16 2 1 36 36 H 1.09006 * 110.03234 * 336.99904 * 19 17 16 37 37 H 1.09003 * 110.03283 * 98.37631 * 19 17 16 38 38 H 1.08997 * 110.03633 * 119.28444 * 20 19 17 39 39 H 1.09007 * 110.03453 * 240.71940 * 20 19 17 40 40 H 1.09003 * 110.49045 * 142.28929 * 21 20 19 41 41 H 1.08996 * 110.49176 * 264.80164 * 21 20 19 42 42 H 0.96705 * 114.00052 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0188 3.3198 -1.5238 7 6 1.6698 3.9768 -2.7858 8 6 2.2109 5.3833 -2.7865 9 1 2.7596 5.7512 -1.9320 10 6 2.0100 6.1988 -3.8800 11 7 1.3416 5.7510 -4.9202 12 14 2.6875 7.9396 -3.8837 13 1 4.0598 7.9355 -4.4510 14 1 1.8127 8.8094 -4.7106 15 1 2.7284 8.4579 -2.4928 16 6 1.9955 -0.7659 1.1376 17 6 3.4469 -1.1613 0.8583 18 1 4.0556 -0.2746 0.6813 19 6 3.5229 -2.1182 -0.3494 20 6 4.6186 -3.1487 -0.0254 21 6 5.1707 -2.7818 1.3675 22 6 4.0193 -1.9892 2.0355 23 1 3.2643 -2.6666 2.4345 24 8 4.5238 -1.1306 3.0603 25 1 -0.3634 0.4221 -0.9370 26 1 -0.3633 -1.0225 0.1030 27 1 -0.3633 0.6004 0.8340 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8308 30 1 2.5247 3.8008 -0.8504 31 1 0.5855 4.0043 -2.8935 32 1 2.1034 3.4207 -3.6171 33 1 1.2005 6.3246 -5.6896 34 1 1.9525 -0.1540 2.0386 35 1 1.3950 -1.6644 1.2797 36 1 2.5660 -2.6216 -0.4878 37 1 3.7860 -1.5629 -1.2498 38 1 4.1936 -4.1522 -0.0065 39 1 5.4144 -3.0937 -0.7683 40 1 5.3945 -3.6828 1.9387 41 1 6.0609 -2.1600 1.2735 42 1 4.8939 -1.6005 3.8202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689259064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:17 Heat of formation + Delta-G solvation = -96.753431 kcal Electronic energy + Delta-G solvation = -21008.936061 eV Core-core repulsion = 17795.299448 eV Total energy + Delta-G solvation = -3213.636613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.54014 -38.68292 -36.47700 -35.11168 -34.05097 -32.28747 -30.42218 -28.68724 -27.74606 -26.63421 -25.39325 -22.86462 -21.64622 -20.87866 -19.95816 -19.40029 -17.69436 -17.10836 -15.87828 -15.78444 -15.51620 -15.14068 -14.91888 -14.53366 -14.24586 -13.90140 -13.76935 -13.54700 -13.13053 -12.69219 -12.39961 -12.28563 -12.14578 -11.87428 -11.54226 -11.47454 -11.29746 -11.06623 -10.94551 -10.87488 -10.80253 -10.61585 -10.41467 -10.27823 -10.10268 -9.36241 -8.93054 -8.69951 -8.12214 -7.79506 -6.13942 -4.20616 3.26087 3.32036 3.34532 3.46306 3.70261 3.98501 4.27375 4.40047 4.43708 4.63608 4.74025 4.99089 5.11742 5.22057 5.27335 5.31277 5.38049 5.41218 5.47927 5.54818 5.63359 5.66934 5.68656 5.74513 5.78786 5.86342 5.99009 6.03955 6.27136 6.34267 6.36691 7.04875 7.20183 7.37176 7.42360 7.51406 7.56390 7.71902 8.00707 8.69418 8.83259 9.19279 9.46344 10.96295 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.003425 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.936930 B = 8172.512704 C = 8475.920094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.034 3.966 4 C 0.499 3.501 5 O -0.540 6.540 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.543 4.543 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.063 3.937 17 C -0.078 4.078 18 H 0.083 0.917 19 C -0.105 4.105 20 C -0.126 4.126 21 C -0.155 4.155 22 C 0.100 3.900 23 H 0.063 0.937 24 O -0.563 6.563 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.389 0.611 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -16.481 15.903 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.097 4.097 4 C 0.283 3.717 5 O -0.418 6.418 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.065 4.065 17 C -0.097 4.097 18 H 0.102 0.898 19 C -0.143 4.143 20 C -0.164 4.164 21 C -0.193 4.193 22 C 0.040 3.960 23 H 0.081 0.919 24 O -0.368 6.368 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.640 -16.610 14.214 22.349 hybrid contribution 0.571 1.154 1.366 1.877 sum 5.211 -15.457 15.580 22.556 Atomic orbital electron populations 1.22573 0.86501 1.01102 1.02532 1.61595 1.08527 1.12159 1.42038 1.22084 1.01725 0.89613 0.96279 1.20310 0.80593 0.82345 0.88407 1.90613 1.40202 1.64311 1.46635 1.46451 1.55743 1.12564 1.21767 1.19066 0.96399 0.91445 0.80012 1.21244 1.36681 0.97340 1.02831 0.91934 1.24951 0.94969 0.98955 0.95161 1.69974 1.39574 1.36873 1.05904 0.86421 0.78838 0.83555 0.78129 1.20463 1.21030 1.19759 1.22189 0.94972 0.97775 0.91579 1.21933 0.95700 0.98848 0.93227 0.89849 1.21986 0.98601 0.95906 0.97817 1.22094 0.98774 0.99248 0.96237 1.23025 0.99178 1.00057 0.97073 1.22903 0.94186 0.91088 0.87794 0.91901 1.86542 1.81701 1.36765 1.31765 0.88788 0.92015 0.96421 0.88466 0.92561 0.77865 0.95669 0.95576 0.92481 0.94373 0.90888 0.91206 0.90827 0.91917 0.91662 0.91818 0.90731 0.77845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.19 60.07 0.55 0.85 16 2 N -0.52 -7.57 4.18 -244.37 -1.02 -8.59 16 3 C 0.03 0.53 5.28 -4.98 -0.03 0.50 16 4 C 0.50 10.20 7.59 -10.99 -0.08 10.11 16 5 O -0.54 -13.06 14.31 5.55 0.08 -12.98 16 6 N -0.72 -15.41 5.55 -61.47 -0.34 -15.75 16 7 C 0.25 6.78 5.43 -5.20 -0.03 6.75 16 8 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 9 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 12 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.06 0.73 4.31 -3.83 -0.02 0.71 16 17 C -0.08 -0.86 2.63 -88.96 -0.23 -1.10 16 18 H 0.08 1.06 6.80 -51.93 -0.35 0.70 16 19 C -0.11 -1.15 6.13 -25.62 -0.16 -1.30 16 20 C -0.13 -1.10 6.80 -25.62 -0.17 -1.28 16 21 C -0.16 -1.25 6.55 -25.05 -0.16 -1.41 16 22 C 0.10 0.89 3.70 -24.72 -0.09 0.80 16 23 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 24 O -0.56 -5.24 13.45 -35.23 -0.47 -5.71 16 25 H 0.09 1.66 6.00 -51.93 -0.31 1.34 16 26 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 27 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.10 1.36 6.63 -51.93 -0.34 1.01 16 29 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 30 H 0.39 7.22 8.32 -40.82 -0.34 6.88 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 35 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 36 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.37 1.82 9.12 45.56 0.42 2.24 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -32.94 339.27 -8.08 -41.02 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.31 Total: 5.44 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -0.84 Total: 1.06 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.63 Total: -49.98 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.39 Total: -18.69 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.94 -8.08 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689259064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.734 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds