Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99780 * 2 1 4 4 C 1.50704 * 109.47095 * 293.95177 * 3 2 1 5 5 O 1.21286 * 119.99702 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00199 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00265 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47721 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99688 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00358 * 179.72663 * 8 7 6 11 11 N 1.31507 * 120.00092 * 0.27195 * 10 8 7 12 12 Si 1.86802 * 119.99663 * 180.27322 * 10 8 7 13 13 H 1.48498 * 109.47144 * 90.00133 * 12 10 8 14 14 H 1.48504 * 109.46916 * 209.99642 * 12 10 8 15 15 H 1.48494 * 109.47437 * 329.99785 * 12 10 8 16 16 C 1.46897 * 111.00200 * 123.95238 * 2 1 3 17 17 C 1.52998 * 109.47273 * 160.39732 * 16 2 1 18 18 H 1.08995 * 110.43724 * 58.15621 * 17 16 2 19 19 C 1.54266 * 110.48501 * 295.61339 * 17 16 2 20 20 C 1.53864 * 106.60226 * 217.71294 * 19 17 16 21 21 C 1.54265 * 106.59932 * 359.97438 * 20 19 17 22 22 C 1.54889 * 110.48470 * 180.84300 * 17 16 2 23 23 H 1.08997 * 110.75837 * 38.30355 * 22 17 16 24 24 O 1.42899 * 110.75488 * 274.93183 * 22 17 16 25 25 H 1.09000 * 109.47403 * 65.75077 * 1 2 3 26 26 H 1.09001 * 109.46887 * 185.75487 * 1 2 3 27 27 H 1.09002 * 109.47120 * 305.74868 * 1 2 3 28 28 H 1.09002 * 109.47233 * 173.95782 * 3 2 1 29 29 H 1.08990 * 109.47541 * 53.95461 * 3 2 1 30 30 H 0.96997 * 120.00282 * 0.02562 * 6 4 3 31 31 H 1.08994 * 109.47328 * 59.99910 * 7 6 4 32 32 H 1.09003 * 109.47517 * 300.00068 * 7 6 4 33 33 H 0.97000 * 120.00182 * 180.02562 * 11 10 8 34 34 H 1.09004 * 109.47191 * 280.39836 * 16 2 1 35 35 H 1.08998 * 109.47024 * 40.39375 * 16 2 1 36 36 H 1.09006 * 110.03234 * 336.99904 * 19 17 16 37 37 H 1.09003 * 110.03283 * 98.37631 * 19 17 16 38 38 H 1.08997 * 110.03633 * 119.28444 * 20 19 17 39 39 H 1.09007 * 110.03453 * 240.71940 * 20 19 17 40 40 H 1.09003 * 110.49045 * 142.28929 * 21 20 19 41 41 H 1.08996 * 110.49176 * 264.80164 * 21 20 19 42 42 H 0.96705 * 114.00052 * 180.02562 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0188 3.3198 -1.5238 7 6 1.6698 3.9768 -2.7858 8 6 2.2109 5.3833 -2.7865 9 1 2.7596 5.7512 -1.9320 10 6 2.0100 6.1988 -3.8800 11 7 1.3416 5.7510 -4.9202 12 14 2.6875 7.9396 -3.8837 13 1 4.0598 7.9355 -4.4510 14 1 1.8127 8.8094 -4.7106 15 1 2.7284 8.4579 -2.4928 16 6 1.9955 -0.7659 1.1376 17 6 3.4469 -1.1613 0.8583 18 1 4.0556 -0.2746 0.6813 19 6 3.5229 -2.1182 -0.3494 20 6 4.6186 -3.1487 -0.0254 21 6 5.1707 -2.7818 1.3675 22 6 4.0193 -1.9892 2.0355 23 1 3.2643 -2.6666 2.4345 24 8 4.5238 -1.1306 3.0603 25 1 -0.3634 0.4221 -0.9370 26 1 -0.3633 -1.0225 0.1030 27 1 -0.3633 0.6004 0.8340 28 1 3.0797 1.3445 0.1082 29 1 1.5611 1.9273 0.8308 30 1 2.5247 3.8008 -0.8504 31 1 0.5855 4.0043 -2.8935 32 1 2.1034 3.4207 -3.6171 33 1 1.2005 6.3246 -5.6896 34 1 1.9525 -0.1540 2.0386 35 1 1.3950 -1.6644 1.2797 36 1 2.5660 -2.6216 -0.4878 37 1 3.7860 -1.5629 -1.2498 38 1 4.1936 -4.1522 -0.0065 39 1 5.4144 -3.0937 -0.7683 40 1 5.3945 -3.6828 1.9387 41 1 6.0609 -2.1600 1.2735 42 1 4.8939 -1.6005 3.8202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689259064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -123.344148 kcal Electronic energy + Delta-G solvation = -21010.089121 eV Core-core repulsion = 17795.299448 eV Total energy + Delta-G solvation = -3214.789673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81478 -39.84711 -37.62214 -36.10005 -35.79958 -34.34242 -31.34897 -30.28915 -28.47524 -28.40312 -26.42187 -24.71221 -22.94205 -21.55678 -21.42000 -20.55245 -18.98646 -18.35460 -17.58030 -17.15596 -16.85085 -16.39996 -16.18913 -15.87253 -15.58117 -15.15110 -14.97066 -14.61837 -14.20703 -14.15997 -13.95802 -13.77997 -13.29884 -13.13347 -12.90776 -12.84226 -12.65403 -12.64418 -12.23431 -12.08826 -11.96573 -11.73576 -11.48661 -11.33975 -11.24457 -10.80164 -10.77868 -10.60395 -9.80578 -9.23543 -8.29323 -6.46076 1.42657 1.45297 1.56509 1.79861 2.27483 2.46605 3.04164 3.05396 3.35952 3.67240 3.77249 3.95758 3.99979 4.19961 4.30615 4.33024 4.40023 4.49067 4.55110 4.59653 4.64276 4.72027 4.76835 4.87532 4.98754 5.09540 5.10735 5.14479 5.23680 5.24562 5.33791 5.41920 5.49744 5.51639 5.70251 5.85079 5.95602 6.15550 6.65105 6.95167 6.98684 7.23542 7.53357 8.82941 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.003425 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.936930 B = 8172.512704 C = 8475.920094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.050 3.950 4 C 0.495 3.505 5 O -0.582 6.582 6 N -0.711 5.711 7 C 0.269 3.731 8 C -0.557 4.557 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.931 5.931 12 Si 0.985 3.015 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.255 1.255 16 C 0.069 3.931 17 C -0.082 4.082 18 H 0.063 0.937 19 C -0.105 4.105 20 C -0.123 4.123 21 C -0.150 4.150 22 C 0.107 3.893 23 H 0.081 0.919 24 O -0.581 6.581 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.030 0.970 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.407 0.593 31 H -0.013 1.013 32 H -0.015 1.015 33 H 0.269 0.731 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -16.642 18.653 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.262 5.262 3 C -0.081 4.081 4 C 0.282 3.718 5 O -0.462 6.462 6 N -0.362 5.362 7 C 0.146 3.854 8 C -0.595 4.595 9 H 0.101 0.899 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.808 3.192 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.179 1.179 16 C -0.058 4.058 17 C -0.101 4.101 18 H 0.082 0.918 19 C -0.143 4.143 20 C -0.161 4.161 21 C -0.187 4.187 22 C 0.047 3.953 23 H 0.099 0.901 24 O -0.389 6.389 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.049 0.951 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.242 0.758 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.939 -16.794 17.032 24.645 hybrid contribution 0.147 1.114 0.500 1.230 sum 6.086 -15.680 17.532 24.296 Atomic orbital electron populations 1.22465 0.86565 1.02432 1.00846 1.61534 1.08697 1.11795 1.44220 1.21956 1.02876 0.90092 0.93208 1.21302 0.79080 0.81582 0.89814 1.90601 1.41832 1.65135 1.48622 1.46206 1.56278 1.13285 1.20467 1.18495 0.93679 0.91881 0.81310 1.21629 1.36783 0.97337 1.03717 0.89896 1.26077 0.94952 1.04114 0.94488 1.70138 1.41017 1.38956 1.06848 0.85148 0.78013 0.77061 0.78937 1.19594 1.20882 1.17911 1.22223 0.95302 0.97930 0.90344 1.21931 0.95240 0.98432 0.94502 0.91825 1.21933 0.99282 0.96272 0.96801 1.22082 0.97981 0.99253 0.96799 1.22988 0.98429 1.00739 0.96582 1.22824 0.94726 0.90574 0.87144 0.90083 1.86487 1.81979 1.37784 1.32674 0.92781 0.89786 0.95124 0.86744 0.90118 0.75816 0.99536 0.99682 0.92241 0.93758 0.89150 0.91438 0.93695 0.90437 0.92046 0.89501 0.91688 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.19 127.69 1.17 1.87 16 2 N -0.54 -15.18 4.18 -927.06 -3.88 -19.05 16 3 C 0.05 1.47 5.28 85.56 0.45 1.92 16 4 C 0.50 20.71 7.59 87.66 0.67 21.38 16 5 O -0.58 -29.60 14.31 -3.05 -0.04 -29.64 16 6 N -0.71 -31.27 5.55 -466.80 -2.59 -33.86 16 7 C 0.27 15.20 5.43 85.63 0.46 15.66 16 8 C -0.56 -30.95 9.28 25.60 0.24 -30.71 16 9 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 10 C 0.00 0.18 5.46 84.66 0.46 0.64 16 11 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 12 Si 0.99 42.93 29.54 68.60 2.03 44.96 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 16 C 0.07 1.44 4.31 86.30 0.37 1.81 16 17 C -0.08 -1.68 2.63 -9.72 -0.03 -1.70 16 18 H 0.06 1.55 6.80 -2.39 -0.02 1.54 16 19 C -0.11 -2.22 6.13 31.32 0.19 -2.03 16 20 C -0.12 -1.96 6.80 31.31 0.21 -1.75 16 21 C -0.15 -2.02 6.55 31.68 0.21 -1.81 16 22 C 0.11 1.60 3.70 31.90 0.12 1.71 16 23 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 24 O -0.58 -9.16 13.45 -148.98 -2.00 -11.16 16 25 H 0.05 1.97 6.00 -2.39 -0.01 1.95 16 26 H 0.08 1.92 7.84 -2.39 -0.02 1.91 16 27 H 0.03 0.76 8.07 -2.39 -0.02 0.74 16 28 H 0.11 3.04 6.63 -2.39 -0.02 3.02 16 29 H 0.08 2.05 8.06 -2.39 -0.02 2.03 16 30 H 0.41 14.86 8.32 -92.71 -0.77 14.08 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.04 0.89 8.00 -2.38 -0.02 0.88 16 35 H 0.09 1.59 7.69 -2.39 -0.02 1.57 16 36 H 0.07 1.43 7.80 -2.38 -0.02 1.41 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.39 2.59 9.12 -74.05 -0.68 1.91 16 Total: -1.00 -74.43 339.27 -2.10 -76.54 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.43 Total: 21.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.53 Total: 7.00 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -6.18 Total: -109.67 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -2.05 Total: -40.80 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.43 -2.10 -76.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689259064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.808 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds