Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99722 * 2 1 4 4 C 1.53007 * 109.46987 * 269.99695 * 3 2 1 5 5 H 1.09002 * 110.75078 * 57.01837 * 4 3 2 6 6 C 1.55298 * 110.84583 * 180.71952 * 4 3 2 7 7 C 1.54944 * 100.94290 * 152.32633 * 6 4 3 8 8 O 1.43654 * 105.13653 * 323.55488 * 7 6 4 9 9 C 1.43234 * 109.96833 * 24.42351 * 8 7 6 10 10 C 1.34770 * 119.99737 * 179.97438 * 2 1 3 11 11 O 1.21287 * 119.99983 * 180.02562 * 10 2 1 12 12 C 1.50698 * 120.00327 * 359.97438 * 10 2 1 13 13 H 1.09006 * 109.47280 * 40.00030 * 12 10 2 14 14 N 1.46901 * 109.47246 * 160.00005 * 12 10 2 15 15 C 1.52996 * 109.47281 * 279.99983 * 12 10 2 16 16 C 1.53002 * 109.47346 * 174.99629 * 15 12 10 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 H 1.09002 * 109.47104 * 270.00450 * 1 2 3 26 26 H 1.09000 * 109.47099 * 29.99777 * 1 2 3 27 27 H 1.09000 * 109.47136 * 150.00197 * 1 2 3 28 28 H 1.08990 * 109.47387 * 29.99785 * 3 2 1 29 29 H 1.08999 * 109.46915 * 150.00146 * 3 2 1 30 30 H 1.09009 * 111.12707 * 270.23790 * 6 4 3 31 31 H 1.08997 * 111.12901 * 34.40574 * 6 4 3 32 32 H 1.09001 * 110.31461 * 204.63765 * 7 6 4 33 33 H 1.09003 * 110.39968 * 82.50561 * 7 6 4 34 34 H 1.09002 * 109.83718 * 238.78054 * 9 8 7 35 35 H 1.09004 * 109.82965 * 117.80283 * 9 8 7 36 36 H 1.00903 * 110.99760 * 296.04706 * 14 12 10 37 37 H 1.00900 * 111.00110 * 60.00327 * 14 12 10 38 38 H 1.09004 * 109.47368 * 54.99817 * 15 12 10 39 39 H 1.09004 * 109.47108 * 294.99918 * 15 12 10 40 40 H 1.09000 * 109.46986 * 60.00254 * 16 15 12 41 41 H 1.08992 * 109.46974 * 300.00318 * 16 15 12 42 42 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5148 1.7963 -1.9917 6 6 3.2445 3.0458 -1.4799 7 6 3.9808 2.9132 -2.8367 8 8 4.3157 1.5206 -2.9473 9 6 3.4178 0.7370 -2.1527 10 6 2.1388 -1.1672 0.0005 11 8 3.3517 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0017 13 1 0.5216 -2.3938 -0.6586 14 7 2.2674 -3.5474 -0.4716 15 6 0.9140 -2.7878 1.4226 16 6 0.0440 -4.0462 1.4038 17 6 -0.4198 -4.3573 2.8036 18 1 -0.1239 -3.7208 3.6244 19 6 -1.2217 -5.4545 3.0362 20 7 -1.5815 -6.2298 2.0366 21 14 -1.7971 -5.8397 4.7711 22 1 -2.6404 -7.0619 4.7530 23 1 -0.6179 -6.0654 5.6451 24 1 -2.5900 -4.6984 5.2945 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5137 29 1 3.1499 1.1384 0.5138 30 1 2.5704 3.9024 -1.4809 31 1 3.9522 3.1061 -0.6531 32 1 4.8856 3.5211 -2.8373 33 1 3.3254 3.2107 -3.6554 34 1 3.9799 0.1678 -1.4122 35 1 2.8540 0.0583 -2.7926 36 1 2.5407 -3.3949 -1.4309 37 1 3.0763 -3.6403 0.1244 38 1 0.3324 -1.9498 1.8070 39 1 1.7795 -2.9539 2.0641 40 1 0.6255 -4.8842 1.0195 41 1 -0.8214 -3.8800 0.7624 42 1 -1.2830 -6.0295 1.1357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691531164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -95.986627 kcal Electronic energy + Delta-G solvation = -21520.202475 eV Core-core repulsion = 18306.599113 eV Total energy + Delta-G solvation = -3213.603362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50532 -39.22081 -35.98030 -35.44126 -33.16658 -32.77338 -30.04584 -29.81380 -27.24423 -26.79921 -25.21616 -23.26976 -22.47869 -21.14209 -20.46682 -19.07282 -17.65085 -16.78528 -16.57626 -16.35551 -16.10415 -15.62328 -14.98771 -14.70059 -14.23437 -13.69492 -13.64458 -13.53858 -13.49399 -13.06350 -12.77845 -12.58393 -12.30392 -12.14320 -11.84323 -11.64412 -11.52192 -11.20949 -11.03162 -10.81005 -10.71492 -10.28276 -10.09315 -9.95127 -9.73525 -9.59818 -8.76635 -8.53182 -8.36163 -8.23171 -6.29790 -3.98457 2.61985 2.90826 3.45934 3.48493 3.66950 3.68008 4.15628 4.41440 4.54638 4.58854 4.67995 4.87194 4.88797 4.96501 5.03906 5.05782 5.21034 5.25334 5.39785 5.43717 5.47670 5.48152 5.56431 5.61974 5.67001 5.74799 5.79171 6.02931 6.30024 6.35859 6.51676 6.81820 6.90909 7.19516 7.39285 7.49916 7.68381 7.72663 8.15977 8.27886 8.53563 8.95554 9.73539 11.11239 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.003606 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.305282 B = 7764.021361 C = 8079.869693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.617 5.617 3 C 0.123 3.877 4 C -0.138 4.138 5 H 0.084 0.916 6 C -0.149 4.149 7 C 0.051 3.949 8 O -0.387 6.387 9 C 0.047 3.953 10 C 0.484 3.516 11 O -0.547 6.547 12 C 0.076 3.924 13 H 0.098 0.902 14 N -0.809 5.809 15 C -0.088 4.088 16 C 0.019 3.981 17 C -0.605 4.605 18 H 0.045 0.955 19 C 0.015 3.985 20 N -0.913 5.913 21 Si 1.067 2.933 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.334 0.666 37 H 0.349 0.651 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.003 0.997 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 19.509 -7.969 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.000 4.000 4 C -0.157 4.157 5 H 0.102 0.898 6 C -0.187 4.187 7 C -0.025 4.025 8 O -0.307 6.307 9 C -0.029 4.029 10 C 0.271 3.729 11 O -0.425 6.425 12 C -0.040 4.040 13 H 0.115 0.885 14 N -0.337 5.337 15 C -0.126 4.126 16 C -0.018 4.018 17 C -0.643 4.643 18 H 0.063 0.937 19 C -0.189 4.189 20 N -0.550 5.550 21 Si 0.895 3.105 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.216 1.216 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.021 0.979 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.254 17.830 -7.044 19.877 hybrid contribution 1.253 2.177 -0.940 2.682 sum 6.507 20.006 -7.984 22.502 Atomic orbital electron populations 1.21940 0.78881 1.03249 1.02811 1.48007 1.07335 1.05761 1.73917 1.21413 0.98379 0.85423 0.94829 1.23167 0.99529 0.95200 0.97842 0.89798 1.23261 0.99525 0.97243 0.98672 1.23328 0.99493 0.83664 0.96055 1.88410 1.55430 1.16948 1.69870 1.23534 0.91484 0.93485 0.94388 1.22714 0.88833 0.86981 0.74334 1.90593 1.14219 1.87408 1.50262 1.21899 0.95762 0.84830 1.01465 0.88451 1.59021 1.24124 1.43704 1.06862 1.21510 1.00033 1.00930 0.90118 1.19122 0.93446 0.92160 0.97042 1.22081 1.34688 1.13949 0.93576 0.93684 1.25783 0.94619 0.93147 1.05324 1.70760 1.44204 1.38874 1.01132 0.83581 0.76330 0.76197 0.74358 1.20811 1.21541 1.21589 0.91681 0.91319 0.90211 0.90170 0.89570 0.89791 0.90001 0.89856 0.92430 0.88362 0.92449 0.85383 0.83728 0.92597 0.92754 0.95574 0.97897 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.57 59.85 0.57 1.33 16 2 N -0.62 -7.51 2.82 -181.57 -0.51 -8.02 16 3 C 0.12 1.27 4.98 -4.04 -0.02 1.25 16 4 C -0.14 -1.32 3.25 -88.67 -0.29 -1.61 16 5 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.15 6.62 -24.49 -0.16 -1.32 16 7 C 0.05 0.46 7.78 38.18 0.30 0.76 16 8 O -0.39 -5.11 11.36 -35.23 -0.40 -5.52 16 9 C 0.05 0.60 6.57 37.88 0.25 0.85 16 10 C 0.48 7.37 6.34 -10.99 -0.07 7.30 16 11 O -0.55 -9.50 13.26 5.55 0.07 -9.43 16 12 C 0.08 1.25 2.42 -68.87 -0.17 1.09 16 13 H 0.10 1.51 6.31 -51.93 -0.33 1.19 16 14 N -0.81 -13.49 8.44 -5.65 -0.05 -13.54 16 15 C -0.09 -1.76 4.71 -26.73 -0.13 -1.88 16 16 C 0.02 0.49 4.17 -27.88 -0.12 0.37 16 17 C -0.60 -17.20 9.11 -34.44 -0.31 -17.51 16 18 H 0.04 1.26 7.74 -52.49 -0.41 0.86 16 19 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 20 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 21 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 26 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.08 0.85 5.94 -51.93 -0.31 0.54 16 28 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.09 1.04 7.35 -51.93 -0.38 0.66 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.08 0.63 8.04 -51.93 -0.42 0.22 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 1.49 5.20 -51.93 -0.27 1.22 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.33 4.86 9.06 -39.29 -0.36 4.51 16 37 H 0.35 5.95 8.58 -39.29 -0.34 5.61 16 38 H 0.06 1.06 6.94 -51.93 -0.36 0.70 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.03 0.71 7.62 -51.93 -0.40 0.31 16 41 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 42 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -33.19 332.39 -7.29 -40.48 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.84 Total: 7.11 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.24 Total: -9.04 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.33 Total: -14.94 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.19 -7.29 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691531164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.509 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds