Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99722 * 2 1 4 4 C 1.53007 * 109.46987 * 269.99695 * 3 2 1 5 5 H 1.09002 * 110.75078 * 57.01837 * 4 3 2 6 6 C 1.55298 * 110.84583 * 180.71952 * 4 3 2 7 7 C 1.54944 * 100.94290 * 152.32633 * 6 4 3 8 8 O 1.43654 * 105.13653 * 323.55488 * 7 6 4 9 9 C 1.43234 * 109.96833 * 24.42351 * 8 7 6 10 10 C 1.34770 * 119.99737 * 179.97438 * 2 1 3 11 11 O 1.21287 * 119.99983 * 180.02562 * 10 2 1 12 12 C 1.50698 * 120.00327 * 359.97438 * 10 2 1 13 13 H 1.09006 * 109.47280 * 40.00030 * 12 10 2 14 14 N 1.46901 * 109.47246 * 160.00005 * 12 10 2 15 15 C 1.52996 * 109.47281 * 279.99983 * 12 10 2 16 16 C 1.53002 * 109.47346 * 174.99629 * 15 12 10 17 17 C 1.50706 * 109.46931 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00193 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99398 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47399 * 299.99813 * 21 19 17 24 24 H 1.48498 * 109.47295 * 60.00420 * 21 19 17 25 25 H 1.09002 * 109.47104 * 270.00450 * 1 2 3 26 26 H 1.09000 * 109.47099 * 29.99777 * 1 2 3 27 27 H 1.09000 * 109.47136 * 150.00197 * 1 2 3 28 28 H 1.08990 * 109.47387 * 29.99785 * 3 2 1 29 29 H 1.08999 * 109.46915 * 150.00146 * 3 2 1 30 30 H 1.09009 * 111.12707 * 270.23790 * 6 4 3 31 31 H 1.08997 * 111.12901 * 34.40574 * 6 4 3 32 32 H 1.09001 * 110.31461 * 204.63765 * 7 6 4 33 33 H 1.09003 * 110.39968 * 82.50561 * 7 6 4 34 34 H 1.09002 * 109.83718 * 238.78054 * 9 8 7 35 35 H 1.09004 * 109.82965 * 117.80283 * 9 8 7 36 36 H 1.00903 * 110.99760 * 296.04706 * 14 12 10 37 37 H 1.00900 * 111.00110 * 60.00327 * 14 12 10 38 38 H 1.09004 * 109.47368 * 54.99817 * 15 12 10 39 39 H 1.09004 * 109.47108 * 294.99918 * 15 12 10 40 40 H 1.09000 * 109.46986 * 60.00254 * 16 15 12 41 41 H 1.08992 * 109.46974 * 300.00318 * 16 15 12 42 42 H 0.97000 * 119.99706 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 1.5148 1.7963 -1.9917 6 6 3.2445 3.0458 -1.4799 7 6 3.9808 2.9132 -2.8367 8 8 4.3157 1.5206 -2.9473 9 6 3.4178 0.7370 -2.1527 10 6 2.1388 -1.1672 0.0005 11 8 3.3517 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0017 13 1 0.5216 -2.3938 -0.6586 14 7 2.2674 -3.5474 -0.4716 15 6 0.9140 -2.7878 1.4226 16 6 0.0440 -4.0462 1.4038 17 6 -0.4198 -4.3573 2.8036 18 1 -0.1239 -3.7208 3.6244 19 6 -1.2217 -5.4545 3.0362 20 7 -1.5815 -6.2298 2.0366 21 14 -1.7971 -5.8397 4.7711 22 1 -2.6404 -7.0619 4.7530 23 1 -0.6179 -6.0654 5.6451 24 1 -2.5900 -4.6984 5.2945 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5137 29 1 3.1499 1.1384 0.5138 30 1 2.5704 3.9024 -1.4809 31 1 3.9522 3.1061 -0.6531 32 1 4.8856 3.5211 -2.8373 33 1 3.3254 3.2107 -3.6554 34 1 3.9799 0.1678 -1.4122 35 1 2.8540 0.0583 -2.7926 36 1 2.5407 -3.3949 -1.4309 37 1 3.0763 -3.6403 0.1244 38 1 0.3324 -1.9498 1.8070 39 1 1.7795 -2.9539 2.0641 40 1 0.6255 -4.8842 1.0195 41 1 -0.8214 -3.8800 0.7624 42 1 -1.2830 -6.0295 1.1357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691531164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -120.452784 kcal Electronic energy + Delta-G solvation = -21521.263407 eV Core-core repulsion = 18306.599113 eV Total energy + Delta-G solvation = -3214.664294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58033 -40.16899 -37.17871 -36.86847 -35.09992 -33.69907 -31.79691 -30.64795 -28.36676 -27.91787 -26.70249 -24.92179 -23.33134 -22.58895 -21.59189 -20.21777 -18.98091 -18.50438 -17.55136 -17.33226 -17.28073 -16.93527 -15.94362 -15.74806 -15.61020 -15.51618 -14.91301 -14.77867 -14.47654 -14.39625 -13.97359 -13.76933 -13.54633 -13.41682 -13.10478 -12.63543 -12.61348 -12.40003 -12.24518 -12.06319 -11.94901 -11.87320 -11.80585 -11.76433 -11.24702 -10.60935 -10.56378 -10.47379 -9.76049 -9.68649 -8.61932 -6.31898 1.41082 1.54648 1.63088 1.82162 1.92243 2.60707 2.88857 3.22548 3.33827 3.46790 3.61804 3.69070 3.84149 3.91218 4.13807 4.22415 4.24688 4.28612 4.31281 4.46524 4.52169 4.62885 4.70942 4.74091 4.77529 4.82819 4.89643 4.93079 4.94541 5.07816 5.19942 5.43136 5.45934 5.62464 5.97658 5.99128 6.06056 6.22594 6.26724 6.40388 6.66123 7.00986 7.49529 8.79134 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.003606 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.305282 B = 7764.021361 C = 8079.869693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.122 3.878 4 C -0.129 4.129 5 H 0.100 0.900 6 C -0.138 4.138 7 C 0.040 3.960 8 O -0.417 6.417 9 C 0.047 3.953 10 C 0.484 3.516 11 O -0.572 6.572 12 C 0.083 3.917 13 H 0.109 0.891 14 N -0.821 5.821 15 C -0.073 4.073 16 C 0.026 3.974 17 C -0.621 4.621 18 H 0.046 0.954 19 C -0.039 4.039 20 N -0.939 5.939 21 Si 1.115 2.885 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.266 1.266 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.346 0.654 37 H 0.345 0.655 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.000 1.000 41 H -0.008 1.008 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 22.105 -7.395 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C -0.001 4.001 4 C -0.148 4.148 5 H 0.118 0.882 6 C -0.176 4.176 7 C -0.036 4.036 8 O -0.337 6.337 9 C -0.029 4.029 10 C 0.271 3.729 11 O -0.452 6.452 12 C -0.033 4.033 13 H 0.127 0.873 14 N -0.350 5.350 15 C -0.111 4.111 16 C -0.012 4.012 17 C -0.659 4.659 18 H 0.065 0.935 19 C -0.236 4.236 20 N -0.576 5.576 21 Si 0.936 3.064 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.191 1.191 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.010 0.990 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.347 20.481 -6.492 21.921 hybrid contribution 1.564 1.414 -1.183 2.417 sum 5.911 21.894 -7.675 23.942 Atomic orbital electron populations 1.22139 0.77331 1.04780 1.03221 1.48037 1.08325 1.05514 1.72225 1.21579 0.97895 0.85035 0.95543 1.23121 0.99578 0.95241 0.96907 0.88196 1.23260 0.99573 0.97116 0.97690 1.23623 1.00744 0.81738 0.97446 1.88377 1.56080 1.19176 1.70067 1.23406 0.91640 0.94138 0.93744 1.22267 0.88309 0.87458 0.74824 1.90598 1.15178 1.87785 1.51665 1.21676 0.96349 0.85883 0.99352 0.87330 1.59004 1.24056 1.44298 1.07624 1.21234 0.98557 0.98900 0.92421 1.18969 0.93354 0.93620 0.95219 1.22540 1.34364 1.13934 0.95035 0.93524 1.27345 0.94623 0.93110 1.08538 1.70898 1.45667 1.39991 1.01053 0.82968 0.76681 0.76685 0.70032 1.21011 1.19943 1.19077 0.91755 0.87702 0.90907 0.86762 0.91594 0.86631 0.90124 0.88631 0.91065 0.91268 0.93645 0.84096 0.84180 0.91309 0.94336 0.98204 0.98995 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.57 127.77 1.22 2.40 16 2 N -0.61 -13.71 2.82 -846.75 -2.39 -16.10 16 3 C 0.12 2.22 4.98 86.38 0.43 2.65 16 4 C -0.13 -2.15 3.25 -9.53 -0.03 -2.19 16 5 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.14 -1.71 6.62 32.05 0.21 -1.50 16 7 C 0.04 0.64 7.78 72.65 0.56 1.21 16 8 O -0.42 -10.84 11.36 -148.98 -1.69 -12.53 16 9 C 0.05 1.18 6.57 72.45 0.48 1.66 16 10 C 0.48 14.59 6.34 87.66 0.56 15.14 16 11 O -0.57 -20.19 13.26 -3.05 -0.04 -20.23 16 12 C 0.08 2.73 2.42 44.17 0.11 2.84 16 13 H 0.11 3.33 6.31 -2.38 -0.02 3.31 16 14 N -0.82 -28.08 8.44 -171.80 -1.45 -29.53 16 15 C -0.07 -2.93 4.71 30.59 0.14 -2.79 16 16 C 0.03 1.31 4.17 29.85 0.12 1.44 16 17 C -0.62 -35.50 9.11 25.60 0.23 -35.27 16 18 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 19 C -0.04 -2.26 5.46 84.66 0.46 -1.79 16 20 N -0.94 -58.70 13.65 21.45 0.29 -58.41 16 21 Si 1.11 50.45 29.90 68.60 2.05 52.50 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 26 H 0.10 1.12 8.07 -2.39 -0.02 1.10 16 27 H 0.07 1.41 5.94 -2.39 -0.01 1.39 16 28 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 29 H 0.07 1.51 7.35 -2.39 -0.02 1.50 16 30 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.08 1.04 8.04 -2.39 -0.02 1.02 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 2.16 5.20 -2.39 -0.01 2.15 16 35 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.35 10.29 9.06 -89.69 -0.81 9.48 16 37 H 0.34 12.19 8.58 -89.69 -0.77 11.42 16 38 H 0.07 2.57 6.94 -2.39 -0.02 2.55 16 39 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.00 -0.02 7.62 -2.39 -0.02 -0.04 16 41 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16 42 H 0.26 16.28 7.22 -92.71 -0.67 15.61 16 Total: -1.00 -73.52 332.39 0.81 -72.71 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.46 Total: 27.78 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.50 Total: -16.19 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.55 Total: -104.04 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.73 Total: -32.76 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -73.52 0.81 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691531164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.746 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds