Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46823 * 2 1 4 4 C 1.42904 * 113.99791 * 179.97438 * 3 2 1 5 5 H 1.08992 * 110.64191 * 328.31242 * 4 3 2 6 6 C 1.55157 * 110.71846 * 91.45661 * 4 3 2 7 7 C 1.54913 * 101.58151 * 154.04341 * 6 4 3 8 8 N 1.47426 * 104.82933 * 322.98848 * 7 6 4 9 9 C 1.34774 * 125.64446 * 204.09839 * 8 7 6 10 10 O 1.21287 * 119.99748 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00490 * 0.02562 * 9 8 7 12 12 H 1.09006 * 109.46755 * 40.00812 * 11 9 8 13 13 N 1.46895 * 109.47178 * 160.00188 * 11 9 8 14 14 C 1.52997 * 109.47268 * 280.00484 * 11 9 8 15 15 C 1.53006 * 109.47127 * 174.99506 * 14 11 9 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 11 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47017 * 89.99937 * 20 18 16 22 22 H 1.48507 * 109.47241 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47209 * 329.99791 * 20 18 16 24 24 C 1.47025 * 108.70393 * 24.35710 * 8 7 6 25 25 H 1.08996 * 109.47186 * 60.00588 * 1 2 3 26 26 H 1.09010 * 109.46945 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47260 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.47545 * 240.00369 * 2 1 3 29 29 H 1.08999 * 109.47168 * 119.99944 * 2 1 3 30 30 H 1.08995 * 111.00967 * 35.96553 * 6 4 3 31 31 H 1.09006 * 111.00303 * 272.11305 * 6 4 3 32 32 H 1.08997 * 110.36263 * 204.15358 * 7 6 4 33 33 H 1.08997 * 110.46359 * 81.87165 * 7 6 4 34 34 H 1.00900 * 111.00349 * 60.00615 * 13 11 9 35 35 H 1.00909 * 111.00123 * 183.95426 * 13 11 9 36 36 H 1.09001 * 109.46832 * 54.99827 * 14 11 9 37 37 H 1.08993 * 109.47194 * 294.99348 * 14 11 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 15 14 11 39 39 H 1.09001 * 109.46998 * 59.99868 * 15 14 11 40 40 H 0.97007 * 120.00011 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88030 * 118.13538 * 24 8 7 42 42 H 1.09005 * 109.87663 * 239.29637 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8822 0.6254 0.5367 6 6 3.9757 1.5401 -1.4500 7 6 5.3055 2.3067 -1.2409 8 7 5.0104 3.2933 -0.1859 9 6 5.6720 4.4503 0.0147 10 8 5.3415 5.1890 0.9181 11 6 6.8224 4.8261 -0.8833 12 1 6.5818 4.5596 -1.9125 13 7 7.0601 6.2730 -0.7950 14 6 8.0801 4.0747 -0.4424 15 6 9.2157 4.3591 -1.4276 16 6 10.4548 3.6196 -0.9930 17 1 10.4342 3.0075 -0.1034 18 6 11.6143 3.7234 -1.7317 19 7 12.6954 3.0776 -1.3527 20 14 11.6496 4.7815 -3.2707 21 1 12.0492 6.1656 -2.9108 22 1 12.6282 4.2189 -4.2358 23 1 10.2997 4.8009 -3.8892 24 6 3.8790 2.8032 0.6149 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2975 2.1023 -2.0918 31 1 4.1582 0.5444 -1.8542 32 1 5.6009 2.8116 -2.1606 33 1 6.0909 1.6253 -0.9139 34 1 7.2851 6.5455 0.1501 35 1 7.7843 6.5603 -1.4362 36 1 7.8757 3.0042 -0.4229 37 1 8.3715 4.4073 0.5538 38 1 8.9242 4.0266 -2.4238 39 1 9.4201 5.4296 -1.4472 40 1 13.5114 3.1510 -1.8722 41 1 4.1930 2.6542 1.6479 42 1 3.0584 3.5196 0.5743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706435405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -90.577823 kcal Electronic energy + Delta-G solvation = -21077.092310 eV Core-core repulsion = 17863.723492 eV Total energy + Delta-G solvation = -3213.368818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23169 -38.65053 -36.58667 -35.59427 -32.82180 -32.01356 -30.55186 -30.31970 -28.96733 -26.67427 -24.32397 -23.22403 -22.66263 -21.32312 -20.33588 -19.10035 -17.67565 -17.33357 -16.69753 -15.85750 -15.68320 -15.49571 -14.99151 -14.31399 -14.27840 -14.10723 -13.75974 -13.56933 -13.34402 -12.86786 -12.69285 -12.66770 -12.53190 -12.35335 -12.00829 -11.87499 -11.67643 -11.42041 -11.29217 -11.02287 -10.91877 -10.34594 -10.11748 -9.88197 -9.84352 -9.42074 -9.33041 -8.65168 -8.63167 -8.32003 -6.13185 -4.12782 2.77817 2.85742 3.24078 3.32339 3.33457 3.44962 4.23309 4.32598 4.36334 4.69337 4.70617 4.81467 4.87444 4.99962 5.02645 5.06436 5.15452 5.19848 5.35086 5.36685 5.47663 5.54781 5.57650 5.63399 5.64825 5.72085 5.77946 5.86763 6.13524 6.21638 6.35105 6.64153 6.90398 7.07259 7.20295 7.32084 7.57431 7.65543 7.77619 8.35093 8.43211 8.90729 9.48093 11.00020 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.003728 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.288985 B = 7509.111538 C = 8051.299555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.376 6.376 4 C 0.078 3.922 5 H 0.079 0.921 6 C -0.155 4.155 7 C 0.098 3.902 8 N -0.620 5.620 9 C 0.543 3.457 10 O -0.534 6.534 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.831 5.831 14 C -0.129 4.129 15 C -0.010 4.010 16 C -0.524 4.524 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.114 3.886 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.348 0.652 35 H 0.351 0.649 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.011 0.989 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.820 -6.296 -0.681 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.294 6.294 4 C 0.020 3.980 5 H 0.097 0.903 6 C -0.194 4.194 7 C -0.025 4.025 8 N -0.357 5.357 9 C 0.332 3.668 10 O -0.409 6.409 11 C -0.039 4.039 12 H 0.114 0.886 13 N -0.363 5.363 14 C -0.169 4.169 15 C -0.047 4.047 16 C -0.561 4.561 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.010 4.010 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.653 -5.597 -0.459 22.369 hybrid contribution 1.391 -0.179 -0.562 1.511 sum -20.262 -5.776 -1.022 21.094 Atomic orbital electron populations 1.21748 0.93660 1.02269 1.03231 1.22523 0.95621 0.83568 1.00263 1.87916 1.19918 1.26681 1.94921 1.23052 0.81563 0.97583 0.95814 0.90264 1.23321 0.97006 1.01534 0.97513 1.22375 0.97090 0.91197 0.91825 1.48344 1.33663 1.20666 1.33019 1.20508 0.82669 0.78620 0.84988 1.90654 1.67158 1.50051 1.33083 1.21480 0.93087 0.90461 0.98850 0.88563 1.58729 1.52580 1.11702 1.13301 1.22193 0.93716 0.99951 1.01015 1.19570 0.94001 0.96527 0.94611 1.21059 0.93626 1.29387 1.12068 0.91078 1.25041 0.95463 0.95331 0.97599 1.69912 1.01630 1.42649 1.39747 0.86771 0.78228 0.80861 0.83367 1.20203 1.21328 1.18952 1.21694 0.89725 0.94631 0.94900 0.91808 0.91067 0.91794 0.93168 0.93188 0.89530 0.89586 0.89699 0.90354 0.83800 0.83438 0.91883 0.92049 0.96365 0.97037 0.92620 0.90809 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.42 6.53 37.16 0.24 0.66 16 3 O -0.38 -3.82 10.09 -35.23 -0.36 -4.18 16 4 C 0.08 0.76 3.39 -24.89 -0.08 0.68 16 5 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 6 C -0.16 -1.39 6.81 -24.58 -0.17 -1.56 16 7 C 0.10 1.08 6.23 -2.53 -0.02 1.07 16 8 N -0.62 -8.66 3.33 -170.51 -0.57 -9.23 16 9 C 0.54 9.31 7.10 -10.99 -0.08 9.23 16 10 O -0.53 -10.81 16.58 5.55 0.09 -10.71 16 11 C 0.08 1.27 2.62 -68.87 -0.18 1.09 16 12 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 13 N -0.83 -13.80 8.94 -5.66 -0.05 -13.85 16 14 C -0.13 -2.45 4.77 -26.73 -0.13 -2.57 16 15 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 16 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 17 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 20 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 24 C 0.11 1.41 6.66 -3.06 -0.02 1.39 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.11 -51.93 -0.42 -0.10 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.91 6.92 -51.93 -0.36 0.55 16 33 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 34 H 0.35 5.89 8.58 -39.29 -0.34 5.55 16 35 H 0.35 5.54 7.55 -39.29 -0.30 5.24 16 36 H 0.06 1.16 7.40 -51.93 -0.38 0.78 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -32.73 338.63 -7.32 -40.05 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.06 Total: 6.84 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.59 Total: -3.83 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.16 Total: -49.54 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.26 Total: -14.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.73 -7.32 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706435405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.530 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds