Wall clock time and date at job start Mon Mar 30 2020 01:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46823 * 2 1 4 4 C 1.42904 * 113.99791 * 179.97438 * 3 2 1 5 5 H 1.08992 * 110.64191 * 328.31242 * 4 3 2 6 6 C 1.55157 * 110.71846 * 91.45661 * 4 3 2 7 7 C 1.54913 * 101.58151 * 154.04341 * 6 4 3 8 8 N 1.47426 * 104.82933 * 322.98848 * 7 6 4 9 9 C 1.34774 * 125.64446 * 204.09839 * 8 7 6 10 10 O 1.21287 * 119.99748 * 180.02562 * 9 8 7 11 11 C 1.50696 * 120.00490 * 0.02562 * 9 8 7 12 12 H 1.09006 * 109.46755 * 40.00812 * 11 9 8 13 13 N 1.46895 * 109.47178 * 160.00188 * 11 9 8 14 14 C 1.52997 * 109.47268 * 280.00484 * 11 9 8 15 15 C 1.53006 * 109.47127 * 174.99506 * 14 11 9 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 11 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99933 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99912 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47017 * 89.99937 * 20 18 16 22 22 H 1.48507 * 109.47241 * 209.99826 * 20 18 16 23 23 H 1.48500 * 109.47209 * 329.99791 * 20 18 16 24 24 C 1.47025 * 108.70393 * 24.35710 * 8 7 6 25 25 H 1.08996 * 109.47186 * 60.00588 * 1 2 3 26 26 H 1.09010 * 109.46945 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47260 * 299.99907 * 1 2 3 28 28 H 1.09003 * 109.47545 * 240.00369 * 2 1 3 29 29 H 1.08999 * 109.47168 * 119.99944 * 2 1 3 30 30 H 1.08995 * 111.00967 * 35.96553 * 6 4 3 31 31 H 1.09006 * 111.00303 * 272.11305 * 6 4 3 32 32 H 1.08997 * 110.36263 * 204.15358 * 7 6 4 33 33 H 1.08997 * 110.46359 * 81.87165 * 7 6 4 34 34 H 1.00900 * 111.00349 * 60.00615 * 13 11 9 35 35 H 1.00909 * 111.00123 * 183.95426 * 13 11 9 36 36 H 1.09001 * 109.46832 * 54.99827 * 14 11 9 37 37 H 1.08993 * 109.47194 * 294.99348 * 14 11 9 38 38 H 1.09001 * 109.46801 * 300.00272 * 15 14 11 39 39 H 1.09001 * 109.46998 * 59.99868 * 15 14 11 40 40 H 0.97007 * 120.00011 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88030 * 118.13538 * 24 8 7 42 42 H 1.09005 * 109.87663 * 239.29637 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8822 0.6254 0.5367 6 6 3.9757 1.5401 -1.4500 7 6 5.3055 2.3067 -1.2409 8 7 5.0104 3.2933 -0.1859 9 6 5.6720 4.4503 0.0147 10 8 5.3415 5.1890 0.9181 11 6 6.8224 4.8261 -0.8833 12 1 6.5818 4.5596 -1.9125 13 7 7.0601 6.2730 -0.7950 14 6 8.0801 4.0747 -0.4424 15 6 9.2157 4.3591 -1.4276 16 6 10.4548 3.6196 -0.9930 17 1 10.4342 3.0075 -0.1034 18 6 11.6143 3.7234 -1.7317 19 7 12.6954 3.0776 -1.3527 20 14 11.6496 4.7815 -3.2707 21 1 12.0492 6.1656 -2.9108 22 1 12.6282 4.2189 -4.2358 23 1 10.2997 4.8009 -3.8892 24 6 3.8790 2.8032 0.6149 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2975 2.1023 -2.0918 31 1 4.1582 0.5444 -1.8542 32 1 5.6009 2.8116 -2.1606 33 1 6.0909 1.6253 -0.9139 34 1 7.2851 6.5455 0.1501 35 1 7.7843 6.5603 -1.4362 36 1 7.8757 3.0042 -0.4229 37 1 8.3715 4.4073 0.5538 38 1 8.9242 4.0266 -2.4238 39 1 9.4201 5.4296 -1.4472 40 1 13.5114 3.1510 -1.8722 41 1 4.1930 2.6542 1.6479 42 1 3.0584 3.5196 0.5743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706435405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:24 Heat of formation + Delta-G solvation = -114.975107 kcal Electronic energy + Delta-G solvation = -21078.150256 eV Core-core repulsion = 17863.723492 eV Total energy + Delta-G solvation = -3214.426764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36649 -39.60223 -37.55065 -37.11200 -34.81980 -32.76871 -32.09966 -31.35170 -29.94321 -28.18751 -25.79791 -24.02984 -23.65217 -22.22934 -21.94376 -20.30856 -19.10083 -18.59007 -18.08822 -16.91995 -16.62985 -16.45005 -16.23392 -16.00182 -15.60850 -15.23576 -15.06390 -14.77164 -14.56042 -14.32303 -13.82502 -13.74073 -13.47416 -13.36065 -13.20851 -13.02242 -12.68843 -12.62948 -12.35834 -12.09419 -12.01290 -11.90956 -11.70219 -11.62365 -11.40897 -10.85305 -10.76481 -10.51564 -9.81210 -9.66411 -8.29329 -6.34896 1.39669 1.40482 1.51584 1.52543 1.73236 2.36841 2.70327 3.06372 3.31347 3.52136 3.67430 3.74116 3.98620 4.02913 4.12809 4.19102 4.24004 4.27574 4.40215 4.53876 4.54697 4.60434 4.63457 4.68290 4.77513 4.90477 4.92093 4.94070 5.06625 5.11771 5.22470 5.30734 5.34720 5.45943 5.62516 6.01854 6.24843 6.25392 6.37761 6.46935 6.73400 7.06334 7.29975 8.87419 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.003728 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.288985 B = 7509.111538 C = 8051.299555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.396 6.396 4 C 0.086 3.914 5 H 0.097 0.903 6 C -0.143 4.143 7 C 0.089 3.911 8 N -0.617 5.617 9 C 0.536 3.464 10 O -0.574 6.574 11 C 0.087 3.913 12 H 0.118 0.882 13 N -0.832 5.832 14 C -0.116 4.116 15 C -0.004 4.004 16 C -0.533 4.533 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.235 1.235 24 C 0.108 3.892 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.345 0.655 35 H 0.356 0.644 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.286 -6.649 -2.841 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.315 6.315 4 C 0.028 3.972 5 H 0.115 0.885 6 C -0.181 4.181 7 C -0.033 4.033 8 N -0.352 5.352 9 C 0.326 3.674 10 O -0.453 6.453 11 C -0.028 4.028 12 H 0.136 0.864 13 N -0.364 5.364 14 C -0.156 4.156 15 C -0.042 4.042 16 C -0.571 4.571 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.158 1.158 24 C -0.015 4.015 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.157 -5.985 -2.635 24.063 hybrid contribution 1.817 -0.166 0.214 1.837 sum -21.340 -6.151 -2.422 22.340 Atomic orbital electron populations 1.21775 0.93106 1.03379 1.02581 1.22747 0.96142 0.82390 1.01367 1.87898 1.19924 1.28617 1.95056 1.22983 0.81803 0.96157 0.96305 0.88535 1.23292 0.95368 1.02592 0.96885 1.22653 0.98615 0.90830 0.91180 1.48391 1.33183 1.20066 1.33514 1.20588 0.83019 0.79250 0.84580 1.90632 1.68458 1.51639 1.34607 1.21385 0.91632 0.90073 0.99733 0.86409 1.58742 1.52774 1.11552 1.13300 1.21998 0.93989 1.00501 0.99154 1.19490 0.92572 0.96287 0.95817 1.21413 0.96078 1.29043 1.10597 0.95503 1.26064 0.94838 0.96874 1.01590 1.70080 1.02598 1.44909 1.41749 0.85622 0.79630 0.78611 0.78558 1.19470 1.21383 1.15827 1.21797 0.88786 0.96013 0.94929 0.92316 0.89086 0.92589 0.91758 0.92317 0.89793 0.86800 0.88852 0.89856 0.84139 0.82793 0.91603 0.94097 0.94794 0.95921 0.92518 0.91371 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.61 6.53 71.98 0.47 1.08 16 3 O -0.40 -7.38 10.09 -148.98 -1.50 -8.89 16 4 C 0.09 1.50 3.39 31.79 0.11 1.60 16 5 H 0.10 1.36 7.88 -2.39 -0.02 1.34 16 6 C -0.14 -2.14 6.81 31.99 0.22 -1.92 16 7 C 0.09 1.75 6.23 86.86 0.54 2.29 16 8 N -0.62 -16.57 3.33 -811.77 -2.70 -19.27 16 9 C 0.54 18.05 7.10 87.66 0.62 18.68 16 10 O -0.57 -23.45 16.58 -3.05 -0.05 -23.50 16 11 C 0.09 2.74 2.62 44.17 0.12 2.86 16 12 H 0.12 3.23 6.92 -2.38 -0.02 3.21 16 13 N -0.83 -26.34 8.94 -171.81 -1.54 -27.88 16 14 C -0.12 -4.31 4.77 30.60 0.15 -4.17 16 15 C 0.00 -0.18 3.81 29.85 0.11 -0.07 16 16 C -0.53 -29.59 9.66 25.60 0.25 -29.34 16 17 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16 18 C 0.00 0.17 5.47 84.65 0.46 0.64 16 19 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 20 Si 0.95 42.06 27.47 68.60 1.88 43.94 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 24 C 0.11 2.62 6.66 86.73 0.58 3.20 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.11 -2.39 -0.02 0.60 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.09 1.70 6.92 -2.39 -0.02 1.68 16 33 H 0.08 1.60 7.86 -2.39 -0.02 1.58 16 34 H 0.35 11.47 8.58 -89.69 -0.77 10.70 16 35 H 0.36 10.40 7.55 -89.69 -0.68 9.73 16 36 H 0.07 2.37 7.40 -2.39 -0.02 2.35 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 39 H 0.02 0.93 6.30 -2.39 -0.02 0.91 16 40 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.72 8.06 -2.38 -0.02 1.70 16 Total: -1.00 -72.12 338.63 0.27 -71.86 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.49 Total: 28.24 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.36 Total: -6.03 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.94 Total: -105.62 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.55 Total: -32.39 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Total: -72.12 0.27 -71.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706435405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.118 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds