Wall clock time and date at job start Mon Mar 30 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00128 * 2 1 4 4 C 1.50699 * 109.47259 * 293.95481 * 3 2 1 5 5 O 1.21284 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99772 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99788 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47303 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99435 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00341 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00156 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47163 * 90.00096 * 12 10 8 14 14 H 1.48497 * 109.47382 * 210.00360 * 12 10 8 15 15 H 1.48498 * 109.47224 * 330.00318 * 12 10 8 16 16 C 1.46905 * 110.99734 * 123.95612 * 2 1 3 17 17 C 1.52998 * 109.47168 * 72.41613 * 16 2 1 18 18 H 1.09006 * 109.52539 * 302.97596 * 17 16 2 19 19 C 1.53184 * 109.52282 * 63.09766 * 17 16 2 20 20 C 1.53171 * 109.03481 * 176.88817 * 19 17 16 21 21 C 1.53095 * 109.16170 * 303.01697 * 20 19 17 22 22 O 1.42901 * 109.41577 * 57.61429 * 21 20 19 23 23 C 1.42905 * 114.09622 * 298.84368 * 22 21 20 24 24 H 1.09004 * 109.47145 * 65.05886 * 1 2 3 25 25 H 1.08996 * 109.47465 * 185.05734 * 1 2 3 26 26 H 1.08997 * 109.47187 * 305.05957 * 1 2 3 27 27 H 1.09007 * 109.46620 * 53.95747 * 3 2 1 28 28 H 1.08995 * 109.47001 * 173.94881 * 3 2 1 29 29 H 0.96996 * 120.00256 * 359.97438 * 6 4 3 30 30 H 1.08998 * 109.47207 * 300.00420 * 7 6 4 31 31 H 1.08999 * 109.47080 * 60.00553 * 7 6 4 32 32 H 0.97003 * 120.00491 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.46771 * 192.41490 * 16 2 1 34 34 H 1.09000 * 109.47101 * 312.41775 * 16 2 1 35 35 H 1.09006 * 109.54066 * 296.75207 * 19 17 16 36 36 H 1.08998 * 109.53869 * 56.92693 * 19 17 16 37 37 H 1.08993 * 109.52857 * 62.92636 * 20 19 17 38 38 H 1.08999 * 109.52383 * 183.05416 * 20 19 17 39 39 H 1.09003 * 109.47777 * 177.59598 * 21 20 19 40 40 H 1.08995 * 109.48139 * 297.61655 * 21 20 19 41 41 H 1.09004 * 109.47367 * 301.17031 * 23 22 21 42 42 H 1.08995 * 109.48116 * 181.14276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0055 1.4454 -2.1411 6 7 2.0181 3.3202 -1.5232 7 6 1.6701 3.9769 -2.7856 8 6 2.2100 5.3838 -2.7856 9 1 2.7581 5.7518 -1.9308 10 6 2.0054 6.2009 -3.8771 11 7 1.3385 5.7526 -4.9183 12 14 2.6741 7.9450 -3.8767 13 1 4.0467 7.9491 -4.4437 14 1 1.7953 8.8124 -4.7016 15 1 2.7122 8.4603 -2.4846 16 6 1.9954 -0.7661 1.1376 17 6 1.7713 -2.2598 0.8940 18 1 0.7094 -2.4477 0.7349 19 6 2.5601 -2.7008 -0.3429 20 6 2.3906 -4.2114 -0.5311 21 6 2.8518 -4.9309 0.7390 22 8 2.0996 -4.4524 1.8558 23 6 2.2563 -3.0547 2.1091 24 1 -0.3634 0.4334 -0.9319 25 1 -0.3634 -1.0236 0.0906 26 1 -0.3633 0.5903 0.8412 27 1 1.5611 1.9273 0.8310 28 1 3.0797 1.3443 0.1083 29 1 2.5228 3.8016 -0.8491 30 1 2.1051 3.4212 -3.6163 31 1 0.5858 4.0036 -2.8945 32 1 1.1942 6.3275 -5.6861 33 1 3.0626 -0.5714 1.2440 34 1 1.4784 -0.4650 2.0488 35 1 2.1814 -2.1790 -1.2219 36 1 3.6154 -2.4651 -0.2054 37 1 1.3415 -4.4397 -0.7186 38 1 2.9923 -4.5428 -1.3774 39 1 2.6936 -6.0036 0.6269 40 1 3.9113 -4.7351 0.9034 41 1 3.3081 -2.8342 2.2915 42 1 1.6692 -2.7757 2.9840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730808711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:04 Heat of formation + Delta-G solvation = -91.153052 kcal Electronic energy + Delta-G solvation = -20880.885848 eV Core-core repulsion = 17667.492086 eV Total energy + Delta-G solvation = -3213.393762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79922 -38.94723 -36.83466 -34.17764 -33.61863 -32.32949 -31.82886 -28.68734 -26.99602 -26.56303 -25.18831 -23.62233 -22.34087 -21.32034 -20.02780 -19.60545 -17.14091 -16.55919 -16.26639 -15.77599 -15.58538 -15.42601 -14.97560 -14.69727 -14.45451 -14.37311 -13.85034 -13.64346 -13.34036 -12.69741 -12.49804 -12.33570 -12.16732 -11.93383 -11.91874 -11.56855 -11.31683 -11.19318 -11.00998 -10.97417 -10.84042 -10.70194 -10.39158 -10.31418 -9.61607 -9.39884 -9.00062 -8.73363 -8.18871 -7.84493 -6.17090 -4.24072 3.23435 3.29488 3.31773 3.40311 3.56570 3.75249 4.26086 4.44056 4.57700 4.65069 4.81248 4.85906 4.97917 5.15726 5.18432 5.18967 5.29124 5.31700 5.39649 5.44339 5.48447 5.58203 5.60152 5.69559 5.71420 5.78659 5.85810 5.94016 6.21250 6.32694 6.37094 6.93979 7.00397 7.12637 7.33091 7.46439 7.52472 7.67714 7.97160 8.64553 8.79290 9.14130 9.42901 10.93106 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046356 B = 0.002928 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.879392 B = 9561.041368 C = 9686.682109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.519 5.519 3 C 0.035 3.965 4 C 0.499 3.501 5 O -0.539 6.539 6 N -0.716 5.716 7 C 0.252 3.748 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.060 3.940 17 C -0.117 4.117 18 H 0.080 0.920 19 C -0.109 4.109 20 C -0.158 4.158 21 C 0.060 3.940 22 O -0.384 6.384 23 C 0.066 3.934 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.389 0.611 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.283 -16.226 14.439 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.242 5.242 3 C -0.096 4.096 4 C 0.283 3.717 5 O -0.417 6.417 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.068 4.068 17 C -0.136 4.136 18 H 0.099 0.901 19 C -0.147 4.147 20 C -0.196 4.196 21 C -0.017 4.017 22 O -0.303 6.303 23 C -0.011 4.011 24 H 0.112 0.888 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.221 0.779 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.787 -16.931 13.292 21.705 hybrid contribution 0.512 1.865 0.776 2.084 sum 3.299 -15.065 14.068 20.875 Atomic orbital electron populations 1.22612 0.86547 1.01366 1.02448 1.61567 1.08821 1.11979 1.41874 1.22055 1.01448 0.89633 0.96454 1.20290 0.80661 0.82378 0.88401 1.90621 1.40157 1.64306 1.46577 1.46453 1.55807 1.12497 1.21737 1.19071 0.96426 0.91458 0.79958 1.21231 1.36766 0.97250 1.02905 0.91947 1.24954 0.94948 0.98983 0.95156 1.69976 1.39523 1.36841 1.05950 0.86419 0.78823 0.83556 0.78128 1.20453 1.21001 1.19778 1.22090 1.00142 0.93019 0.91562 1.21788 1.01588 0.94162 0.96046 0.90143 1.21527 0.99781 0.94390 0.98987 1.22221 1.02536 0.96730 0.98063 1.22595 0.94720 0.98515 0.85871 1.87918 1.69836 1.23488 1.49048 1.22574 1.00338 0.81057 0.97130 0.88821 0.91767 0.96343 0.92534 0.88515 0.77873 0.95571 0.95653 0.92446 0.90809 0.94639 0.89592 0.92295 0.91201 0.90976 0.89216 0.93346 0.93197 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.05 60.06 0.54 0.79 16 2 N -0.52 -7.09 3.89 -244.37 -0.95 -8.04 16 3 C 0.04 0.50 5.44 -4.98 -0.03 0.47 16 4 C 0.50 9.79 7.58 -10.99 -0.08 9.71 16 5 O -0.54 -12.74 14.31 5.55 0.08 -12.66 16 6 N -0.72 -14.88 5.55 -61.47 -0.34 -15.22 16 7 C 0.25 6.65 5.43 -5.19 -0.03 6.63 16 8 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 9 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 12 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.06 0.62 4.40 -3.82 -0.02 0.60 16 17 C -0.12 -1.17 2.40 -90.48 -0.22 -1.39 16 18 H 0.08 0.89 6.54 -51.93 -0.34 0.55 16 19 C -0.11 -1.16 5.14 -26.55 -0.14 -1.30 16 20 C -0.16 -1.46 6.14 -26.59 -0.16 -1.63 16 21 C 0.06 0.52 6.84 37.21 0.25 0.77 16 22 O -0.38 -4.10 10.77 -35.23 -0.38 -4.48 16 23 C 0.07 0.60 6.13 37.20 0.23 0.82 16 24 H 0.09 1.62 5.99 -51.93 -0.31 1.31 16 25 H 0.06 0.79 6.41 -51.93 -0.33 0.46 16 26 H 0.02 0.23 8.08 -51.93 -0.42 -0.19 16 27 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.10 1.16 7.86 -51.93 -0.41 0.75 16 29 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 33 H 0.07 0.69 7.80 -51.93 -0.41 0.29 16 34 H 0.04 0.33 8.05 -51.93 -0.42 -0.08 16 35 H 0.09 1.13 7.80 -51.93 -0.41 0.72 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -31.98 336.03 -8.01 -39.99 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.14 Total: 2.82 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.06 Total: 2.12 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.56 Total: -48.64 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.30 Total: -17.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.98 -8.01 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730808711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.160 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds