Wall clock time and date at job start Mon Mar 30 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00128 * 2 1 4 4 C 1.50699 * 109.47259 * 293.95481 * 3 2 1 5 5 O 1.21284 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99772 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99788 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47303 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99435 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00341 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00156 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00280 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47163 * 90.00096 * 12 10 8 14 14 H 1.48497 * 109.47382 * 210.00360 * 12 10 8 15 15 H 1.48498 * 109.47224 * 330.00318 * 12 10 8 16 16 C 1.46905 * 110.99734 * 123.95612 * 2 1 3 17 17 C 1.52998 * 109.47168 * 72.41613 * 16 2 1 18 18 H 1.09006 * 109.52539 * 302.97596 * 17 16 2 19 19 C 1.53184 * 109.52282 * 63.09766 * 17 16 2 20 20 C 1.53171 * 109.03481 * 176.88817 * 19 17 16 21 21 C 1.53095 * 109.16170 * 303.01697 * 20 19 17 22 22 O 1.42901 * 109.41577 * 57.61429 * 21 20 19 23 23 C 1.42905 * 114.09622 * 298.84368 * 22 21 20 24 24 H 1.09004 * 109.47145 * 65.05886 * 1 2 3 25 25 H 1.08996 * 109.47465 * 185.05734 * 1 2 3 26 26 H 1.08997 * 109.47187 * 305.05957 * 1 2 3 27 27 H 1.09007 * 109.46620 * 53.95747 * 3 2 1 28 28 H 1.08995 * 109.47001 * 173.94881 * 3 2 1 29 29 H 0.96996 * 120.00256 * 359.97438 * 6 4 3 30 30 H 1.08998 * 109.47207 * 300.00420 * 7 6 4 31 31 H 1.08999 * 109.47080 * 60.00553 * 7 6 4 32 32 H 0.97003 * 120.00491 * 179.97438 * 11 10 8 33 33 H 1.09001 * 109.46771 * 192.41490 * 16 2 1 34 34 H 1.09000 * 109.47101 * 312.41775 * 16 2 1 35 35 H 1.09006 * 109.54066 * 296.75207 * 19 17 16 36 36 H 1.08998 * 109.53869 * 56.92693 * 19 17 16 37 37 H 1.08993 * 109.52857 * 62.92636 * 20 19 17 38 38 H 1.08999 * 109.52383 * 183.05416 * 20 19 17 39 39 H 1.09003 * 109.47777 * 177.59598 * 21 20 19 40 40 H 1.08995 * 109.48139 * 297.61655 * 21 20 19 41 41 H 1.09004 * 109.47367 * 301.17031 * 23 22 21 42 42 H 1.08995 * 109.48116 * 181.14276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 8 1.0055 1.4454 -2.1411 6 7 2.0181 3.3202 -1.5232 7 6 1.6701 3.9769 -2.7856 8 6 2.2100 5.3838 -2.7856 9 1 2.7581 5.7518 -1.9308 10 6 2.0054 6.2009 -3.8771 11 7 1.3385 5.7526 -4.9183 12 14 2.6741 7.9450 -3.8767 13 1 4.0467 7.9491 -4.4437 14 1 1.7953 8.8124 -4.7016 15 1 2.7122 8.4603 -2.4846 16 6 1.9954 -0.7661 1.1376 17 6 1.7713 -2.2598 0.8940 18 1 0.7094 -2.4477 0.7349 19 6 2.5601 -2.7008 -0.3429 20 6 2.3906 -4.2114 -0.5311 21 6 2.8518 -4.9309 0.7390 22 8 2.0996 -4.4524 1.8558 23 6 2.2563 -3.0547 2.1091 24 1 -0.3634 0.4334 -0.9319 25 1 -0.3634 -1.0236 0.0906 26 1 -0.3633 0.5903 0.8412 27 1 1.5611 1.9273 0.8310 28 1 3.0797 1.3443 0.1083 29 1 2.5228 3.8016 -0.8491 30 1 2.1051 3.4212 -3.6163 31 1 0.5858 4.0036 -2.8945 32 1 1.1942 6.3275 -5.6861 33 1 3.0626 -0.5714 1.2440 34 1 1.4784 -0.4650 2.0488 35 1 2.1814 -2.1790 -1.2219 36 1 3.6154 -2.4651 -0.2054 37 1 1.3415 -4.4397 -0.7186 38 1 2.9923 -4.5428 -1.3774 39 1 2.6936 -6.0036 0.6269 40 1 3.9113 -4.7351 0.9034 41 1 3.3081 -2.8342 2.2915 42 1 1.6692 -2.7757 2.9840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730808711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:04 Heat of formation + Delta-G solvation = -115.152452 kcal Electronic energy + Delta-G solvation = -20881.926540 eV Core-core repulsion = 17667.492086 eV Total energy + Delta-G solvation = -3214.434454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83416 -40.22660 -37.95853 -36.06838 -34.52740 -34.32866 -32.61471 -30.26169 -28.39887 -27.75894 -25.96045 -25.01529 -23.83668 -22.29829 -21.28646 -20.80955 -18.91692 -17.62669 -17.40809 -16.97894 -16.90306 -16.70127 -16.23975 -15.97736 -15.75283 -15.43156 -15.00577 -14.75827 -14.67077 -14.11084 -13.99243 -13.72312 -13.48868 -13.07025 -12.93294 -12.81976 -12.75098 -12.65043 -12.45141 -12.21748 -12.06614 -11.81355 -11.48255 -11.46008 -11.14065 -10.79830 -10.62639 -10.35767 -9.78886 -9.21109 -8.29139 -6.45865 1.42927 1.45405 1.56545 1.83333 2.27821 2.46743 2.97299 3.05717 3.13369 3.78386 3.90450 3.94285 4.05712 4.11165 4.25023 4.33033 4.37118 4.47387 4.49197 4.50095 4.61376 4.68565 4.76544 4.79303 4.85340 5.01970 5.05605 5.11672 5.15320 5.21317 5.25208 5.42942 5.46014 5.50853 5.71758 5.85847 5.97429 6.14175 6.30258 6.65954 6.98069 7.24153 7.56926 8.83109 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046356 B = 0.002928 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.879392 B = 9561.041368 C = 9686.682109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.050 3.950 4 C 0.493 3.507 5 O -0.585 6.585 6 N -0.711 5.711 7 C 0.269 3.731 8 C -0.555 4.555 9 H 0.085 0.915 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.985 3.015 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.255 1.255 16 C 0.064 3.936 17 C -0.112 4.112 18 H 0.065 0.935 19 C -0.108 4.108 20 C -0.156 4.156 21 C 0.059 3.941 22 O -0.403 6.403 23 C 0.068 3.932 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.408 0.592 30 H -0.016 1.016 31 H -0.015 1.015 32 H 0.268 0.732 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -15.768 17.243 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.081 4.081 4 C 0.280 3.720 5 O -0.466 6.466 6 N -0.362 5.362 7 C 0.146 3.854 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.808 3.192 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.178 1.178 16 C -0.063 4.063 17 C -0.131 4.131 18 H 0.083 0.917 19 C -0.146 4.146 20 C -0.194 4.194 21 C -0.017 4.017 22 O -0.322 6.322 23 C -0.009 4.009 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.243 0.757 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.668 -16.490 16.156 23.552 hybrid contribution -0.102 1.620 -0.125 1.628 sum 4.566 -14.870 16.030 22.337 Atomic orbital electron populations 1.22442 0.87214 1.01925 1.00740 1.61470 1.08507 1.12088 1.44338 1.21981 1.03363 0.89654 0.93062 1.21424 0.79033 0.81564 0.90015 1.90613 1.41947 1.65225 1.48802 1.46186 1.56391 1.13273 1.20326 1.18476 0.93572 0.91893 0.81453 1.21634 1.36685 0.97235 1.03732 0.89742 1.26084 0.94965 1.04143 0.94535 1.70144 1.41113 1.38903 1.06929 0.85153 0.77992 0.77094 0.78957 1.19588 1.21042 1.17825 1.22142 1.01159 0.92276 0.90740 1.21740 1.00573 0.94464 0.96373 0.91671 1.21473 1.00057 0.94967 0.98092 1.22201 1.02066 0.96028 0.99071 1.22695 0.95139 0.99094 0.84785 1.87898 1.70422 1.24347 1.49577 1.22643 1.01422 0.80129 0.96698 0.93011 0.90693 0.94877 0.89653 0.85456 0.75661 0.99774 0.99740 0.92284 0.89061 0.92791 0.92795 0.91594 0.92361 0.90185 0.87952 0.92118 0.91726 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.05 127.69 1.16 1.84 16 2 N -0.54 -13.99 3.89 -927.05 -3.61 -17.59 16 3 C 0.05 1.29 5.44 85.56 0.47 1.76 16 4 C 0.49 19.49 7.58 87.66 0.66 20.15 16 5 O -0.59 -29.08 14.31 -3.04 -0.04 -29.13 16 6 N -0.71 -29.72 5.55 -466.79 -2.59 -32.31 16 7 C 0.27 14.85 5.43 85.63 0.46 15.32 16 8 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 9 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 10 C 0.00 0.12 5.46 84.65 0.46 0.58 16 11 N -0.93 -56.64 13.29 21.44 0.28 -56.35 16 12 Si 0.99 42.24 29.54 68.60 2.03 44.27 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 16 C 0.06 1.13 4.40 86.30 0.38 1.51 16 17 C -0.11 -2.05 2.40 -10.70 -0.03 -2.08 16 18 H 0.06 1.39 6.54 -2.38 -0.02 1.38 16 19 C -0.11 -2.21 5.14 30.71 0.16 -2.06 16 20 C -0.16 -2.77 6.14 30.68 0.19 -2.58 16 21 C 0.06 0.92 6.84 72.01 0.49 1.41 16 22 O -0.40 -7.77 10.77 -148.98 -1.60 -9.37 16 23 C 0.07 1.03 6.13 72.01 0.44 1.48 16 24 H 0.05 1.88 5.99 -2.38 -0.01 1.86 16 25 H 0.07 1.85 6.41 -2.39 -0.02 1.83 16 26 H 0.03 0.79 8.08 -2.39 -0.02 0.78 16 27 H 0.09 1.78 8.07 -2.38 -0.02 1.76 16 28 H 0.13 2.56 7.86 -2.39 -0.02 2.54 16 29 H 0.41 13.80 8.32 -92.71 -0.77 13.03 16 30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.09 1.33 7.80 -2.39 -0.02 1.31 16 34 H 0.05 0.79 8.05 -2.39 -0.02 0.77 16 35 H 0.05 1.45 7.80 -2.38 -0.02 1.43 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.22 336.03 -0.23 -73.45 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.22 Total: 19.65 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.08 Total: 7.38 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.91 Total: -106.25 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.65 Total: -38.50 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -73.22 -0.23 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730808711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.705 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds