Wall clock time and date at job start Mon Mar 30 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46981 * 2 1 4 4 C 1.42901 * 113.99686 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.50358 * 330.08259 * 4 3 2 6 6 C 1.53117 * 109.50172 * 90.20001 * 4 3 2 7 7 C 1.53117 * 109.16392 * 177.59159 * 6 4 3 8 8 C 1.53033 * 109.27703 * 302.34823 * 7 6 4 9 9 N 1.46846 * 109.52460 * 59.17754 * 8 7 6 10 10 C 1.46901 * 110.99870 * 174.15772 * 9 8 7 11 11 C 1.50696 * 109.47303 * 294.20737 * 10 9 8 12 12 O 1.21284 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99838 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00072 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47289 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46632 * 90.00476 * 19 17 15 21 21 H 1.48496 * 109.46690 * 210.00029 * 19 17 15 22 22 H 1.48498 * 109.47171 * 330.00226 * 19 17 15 23 23 C 1.46842 * 111.19913 * 298.25552 * 9 8 7 24 24 H 1.08995 * 109.46978 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47232 * 299.99749 * 1 2 3 26 26 H 1.09004 * 109.46888 * 59.99791 * 1 2 3 27 27 H 1.08996 * 109.46727 * 240.00302 * 2 1 3 28 28 H 1.09004 * 109.46888 * 120.00209 * 2 1 3 29 29 H 1.08999 * 109.52346 * 297.50434 * 6 4 3 30 30 H 1.09004 * 109.52323 * 57.61986 * 6 4 3 31 31 H 1.09006 * 109.49855 * 62.28890 * 7 6 4 32 32 H 1.09000 * 109.50820 * 182.36398 * 7 6 4 33 33 H 1.08994 * 109.46353 * 299.15805 * 8 7 6 34 34 H 1.09001 * 109.45889 * 179.19257 * 8 7 6 35 35 H 1.09004 * 109.46970 * 174.20815 * 10 9 8 36 36 H 1.09001 * 109.47332 * 54.21223 * 10 9 8 37 37 H 0.97001 * 120.00676 * 359.97438 * 13 11 10 38 38 H 1.09001 * 109.47060 * 300.00359 * 14 13 11 39 39 H 1.09004 * 109.47073 * 59.99848 * 14 13 11 40 40 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.46988 * 181.75600 * 23 9 8 42 42 H 1.09007 * 109.46360 * 301.72873 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8638 0.6012 0.5133 6 6 3.9407 1.5052 -1.4425 7 6 5.4611 1.6866 -1.4331 8 6 5.8126 2.9658 -0.6702 9 7 5.3042 2.8729 0.7043 10 6 5.7425 4.0228 1.5065 11 6 7.2401 3.9805 1.6688 12 8 7.8795 3.0812 1.1654 13 7 7.8689 4.9420 2.3735 14 6 9.3249 4.9012 2.5309 15 6 9.7745 6.0808 3.3539 16 1 9.0482 6.7897 3.7232 17 6 11.1128 6.2544 3.6364 18 7 11.9971 5.3908 3.1870 19 14 11.6701 7.7170 4.6560 20 1 11.6697 7.3467 6.0941 21 1 13.0420 8.1115 4.2469 22 1 10.7418 8.8552 4.4376 23 6 3.8414 2.7459 0.7219 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.6881 0.5729 -1.9474 30 1 3.4765 2.3406 -1.9669 31 1 5.9265 0.8312 -0.9433 32 1 5.8251 1.7615 -2.4578 33 1 5.3583 3.8222 -1.1684 34 1 6.8953 3.0902 -0.6494 35 1 5.2694 3.9828 2.4877 36 1 5.4575 4.9468 1.0032 37 1 7.3577 5.6615 2.7758 38 1 9.6103 3.9770 3.0335 39 1 9.7977 4.9420 1.5496 40 1 12.9386 5.5131 3.3854 41 1 3.4922 2.7106 1.7538 42 1 3.3962 3.6034 0.2171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738319174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:16 Heat of formation + Delta-G solvation = -114.649306 kcal Electronic energy + Delta-G solvation = -20821.195797 eV Core-core repulsion = 17606.783161 eV Total energy + Delta-G solvation = -3214.412636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01379 -39.89311 -38.03828 -36.07826 -34.40158 -34.13672 -32.45487 -30.43804 -29.89807 -27.98724 -25.00804 -23.97303 -23.89153 -23.30245 -21.34287 -20.85622 -18.94965 -17.91752 -17.53979 -17.10550 -16.70322 -16.60065 -16.46271 -15.96877 -15.56554 -15.38093 -14.78933 -14.58745 -14.53535 -14.15455 -14.09241 -13.84345 -13.60069 -13.06852 -12.95316 -12.89454 -12.74598 -12.63237 -12.47338 -12.22345 -12.00735 -11.72031 -11.70069 -11.55179 -11.47526 -10.79285 -10.62162 -10.39955 -9.79001 -9.31357 -8.28651 -6.45126 1.43370 1.45805 1.56935 1.81115 2.14269 2.38367 2.74370 3.06188 3.20016 3.74417 3.81987 3.97816 4.01978 4.16741 4.22836 4.25849 4.33642 4.39451 4.46113 4.50884 4.54095 4.60093 4.71582 4.86763 4.92060 4.96437 5.00311 5.06673 5.12756 5.16752 5.25962 5.29860 5.35579 5.50491 5.71524 5.85823 5.93273 6.03397 6.33137 6.66388 6.96685 7.24527 7.54859 8.83526 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047634 B = 0.002946 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.677968 B = 9503.256581 C = 9832.989579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.397 6.397 4 C 0.097 3.903 5 H 0.064 0.936 6 C -0.132 4.132 7 C -0.107 4.107 8 C 0.048 3.952 9 N -0.536 5.536 10 C 0.051 3.949 11 C 0.495 3.505 12 O -0.583 6.583 13 N -0.710 5.710 14 C 0.269 3.731 15 C -0.555 4.555 16 H 0.084 0.916 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.255 1.255 23 C 0.064 3.936 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.408 0.592 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.089 0.911 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 -5.928 -6.485 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.316 6.316 4 C 0.038 3.962 5 H 0.082 0.918 6 C -0.170 4.170 7 C -0.145 4.145 8 C -0.079 4.079 9 N -0.262 5.262 10 C -0.080 4.080 11 C 0.282 3.718 12 O -0.463 6.463 13 N -0.361 5.361 14 C 0.146 3.854 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.179 1.179 23 C -0.063 4.063 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.076 -6.872 -6.639 24.055 hybrid contribution 0.664 1.157 0.210 1.351 sum -21.412 -5.714 -6.429 23.075 Atomic orbital electron populations 1.21755 0.92632 1.03323 1.02776 1.22698 0.96394 0.82902 1.00645 1.87833 1.20621 1.27992 1.95192 1.21926 0.80645 0.97979 0.95612 0.91818 1.22022 0.95185 1.03001 0.96803 1.21452 0.95646 0.97180 1.00206 1.22237 1.00560 0.97787 0.87364 1.61360 1.10483 1.41485 1.12872 1.21916 0.90418 0.94056 1.01606 1.21278 0.91262 0.81260 0.78007 1.90613 1.69154 1.36783 1.49745 1.46184 1.09084 1.27572 1.53255 1.18496 0.76489 0.95912 0.94501 1.21630 0.93739 1.09921 1.33998 0.89782 1.26079 0.96556 1.00006 0.97087 1.70142 1.02641 1.38039 1.46189 0.85156 0.77555 0.78280 0.78216 1.19612 1.21020 1.17884 1.22002 0.85734 0.96912 1.01665 0.89322 0.92207 0.92132 0.92754 0.92999 0.90601 0.91189 0.92269 0.89945 0.94265 0.91763 0.85349 0.89595 0.75635 0.99647 0.99580 0.92286 0.89255 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.05 0.77 6.47 71.98 0.47 1.23 16 3 O -0.40 -8.13 9.99 -148.98 -1.49 -9.62 16 4 C 0.10 2.04 2.77 30.65 0.08 2.12 16 5 H 0.06 1.42 7.79 -2.39 -0.02 1.41 16 6 C -0.13 -2.61 5.62 30.67 0.17 -2.44 16 7 C -0.11 -2.53 6.09 30.64 0.19 -2.34 16 8 C 0.05 1.37 5.10 86.32 0.44 1.81 16 9 N -0.54 -14.96 4.40 -900.95 -3.96 -18.92 16 10 C 0.05 1.38 5.45 85.56 0.47 1.85 16 11 C 0.50 19.77 7.50 87.66 0.66 20.43 16 12 O -0.58 -28.83 14.33 -3.04 -0.04 -28.87 16 13 N -0.71 -29.87 5.55 -466.77 -2.59 -32.46 16 14 C 0.27 14.83 5.43 85.63 0.46 15.30 16 15 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 16 H 0.08 4.12 7.60 -2.91 -0.02 4.09 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 19 Si 0.98 42.37 29.54 68.60 2.03 44.40 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 C 0.06 1.42 5.11 86.33 0.44 1.86 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.75 7.95 -2.39 -0.02 0.73 16 28 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.08 1.30 7.95 -2.39 -0.02 1.28 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 2.34 5.78 -2.39 -0.01 2.33 16 35 H 0.13 2.80 7.99 -2.38 -0.02 2.78 16 36 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 37 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 38 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.09 1.81 8.02 -2.39 -0.02 1.79 16 42 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -71.46 340.31 -0.74 -72.20 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.22 Total: 20.11 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.82 Total: 9.39 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -6.27 Total: -107.61 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.53 Total: -38.49 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -71.46 -0.74 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738319174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.449 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds