Wall clock time and date at job start Mon Mar 30 2020 01:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46793 * 2 1 4 4 C 1.42906 * 113.99760 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46934 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.27643 * 54.29864 * 5 4 3 7 7 C 1.54598 * 110.39179 * 292.14876 * 5 4 3 8 8 C 1.54932 * 102.92273 * 219.08302 * 7 5 4 9 9 N 1.48539 * 103.22489 * 37.41993 * 8 7 5 10 10 C 1.46900 * 110.99796 * 200.27757 * 9 8 7 11 11 C 1.50704 * 109.47108 * 307.39230 * 10 9 8 12 12 O 1.21277 * 120.00236 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99381 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46573 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00181 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99770 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00143 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00203 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47062 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47085 * 210.00571 * 19 17 15 22 22 H 1.48504 * 109.47129 * 330.00210 * 19 17 15 23 23 C 1.47897 * 105.81843 * 320.78612 * 9 8 7 24 24 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47158 * 300.00134 * 1 2 3 26 26 H 1.08995 * 109.47547 * 59.99793 * 1 2 3 27 27 H 1.09001 * 109.47121 * 240.00422 * 2 1 3 28 28 H 1.08998 * 109.47251 * 119.99767 * 2 1 3 29 29 H 1.08993 * 109.47125 * 59.99926 * 4 3 2 30 30 H 1.09001 * 109.46838 * 299.99926 * 4 3 2 31 31 H 1.08994 * 110.72376 * 337.44853 * 7 5 4 32 32 H 1.09002 * 110.71797 * 100.72760 * 7 5 4 33 33 H 1.08999 * 110.67033 * 278.98382 * 8 7 5 34 34 H 1.09005 * 110.81115 * 155.91631 * 8 7 5 35 35 H 1.08997 * 109.47506 * 67.39044 * 10 9 8 36 36 H 1.08997 * 109.46984 * 187.39447 * 10 9 8 37 37 H 0.96998 * 120.00288 * 0.02562 * 13 11 10 38 38 H 1.08994 * 109.47452 * 299.99808 * 14 13 11 39 39 H 1.08997 * 109.47305 * 60.00454 * 14 13 11 40 40 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.92227 * 265.97847 * 23 9 8 42 42 H 1.09000 * 110.07910 * 144.77476 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 1 3.3466 3.4568 0.8310 7 6 3.4357 3.6006 -1.3415 8 6 4.6324 4.5435 -1.6229 9 7 5.8014 3.7606 -1.1465 10 6 6.9498 4.6375 -0.8820 11 6 7.2204 5.4903 -2.0947 12 8 6.5248 5.3789 -3.0819 13 7 8.2349 6.3775 -2.0818 14 6 8.4976 7.2069 -3.2606 15 6 9.6759 8.1064 -2.9893 16 1 10.1785 8.0648 -2.0343 17 6 10.1116 8.9834 -3.9599 18 7 11.1401 9.7680 -3.7234 19 14 9.2418 9.0560 -5.6115 20 1 8.1465 10.0568 -5.5506 21 1 10.2122 9.4475 -6.6652 22 1 8.6753 7.7211 -5.9318 23 6 5.3558 3.0832 0.0905 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8907 30 1 3.8340 0.9765 0.8892 31 1 3.3412 2.8519 -2.1280 32 1 2.5123 4.1701 -1.2366 33 1 4.5336 5.4700 -1.0572 34 1 4.7183 4.7526 -2.6893 35 1 6.7285 5.2788 -0.0290 36 1 7.8277 4.0300 -0.6619 37 1 8.7911 6.4669 -1.2922 38 1 8.7192 6.5660 -4.1138 39 1 7.6195 7.8142 -3.4805 40 1 11.4469 10.3847 -4.4064 41 1 5.6212 3.6850 0.9596 42 1 5.8181 2.0990 0.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747966963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:55 Heat of formation + Delta-G solvation = -81.913020 kcal Electronic energy + Delta-G solvation = -20534.015984 eV Core-core repulsion = 17321.022900 eV Total energy + Delta-G solvation = -3212.993084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.84444 -38.61978 -37.50606 -34.32997 -33.11214 -32.36765 -31.25065 -29.41140 -28.50082 -26.51273 -24.45505 -23.09013 -22.16341 -21.14119 -20.24106 -19.87494 -17.44777 -16.95532 -16.42028 -16.08091 -15.91723 -15.49180 -15.04991 -14.82683 -14.31217 -13.89578 -13.76155 -13.72395 -12.96155 -12.84965 -12.79342 -12.43460 -12.32589 -12.15902 -11.93374 -11.76497 -11.51498 -11.30552 -11.16957 -11.05473 -10.78140 -10.68884 -10.61047 -9.96910 -9.83394 -9.50396 -9.05090 -8.78438 -8.37435 -8.12247 -6.22153 -4.24509 3.21281 3.26976 3.32676 3.34415 3.42042 3.71924 4.24059 4.33124 4.53007 4.60946 4.71827 4.75056 4.93638 5.04576 5.13036 5.13461 5.22451 5.28331 5.31918 5.36695 5.37618 5.48410 5.53180 5.54677 5.57579 5.75426 5.78626 5.85348 6.01055 6.20264 6.38655 6.77203 6.91441 6.95386 7.00321 7.07012 7.24463 7.39121 8.13183 8.50739 8.74674 8.94102 9.37981 10.89745 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052412 B = 0.002838 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.098832 B = 9863.590991 C =10240.727442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.074 3.926 5 C -0.097 4.097 6 H 0.081 0.919 7 C -0.112 4.112 8 C 0.030 3.970 9 N -0.499 5.499 10 C 0.026 3.974 11 C 0.500 3.500 12 O -0.544 6.544 13 N -0.706 5.706 14 C 0.222 3.778 15 C -0.544 4.544 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C 0.041 3.959 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.049 0.951 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 -17.584 10.284 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.003 4.003 5 C -0.117 4.117 6 H 0.100 0.900 7 C -0.150 4.150 8 C -0.097 4.097 9 N -0.224 5.224 10 C -0.106 4.106 11 C 0.285 3.715 12 O -0.422 6.422 13 N -0.355 5.355 14 C 0.100 3.900 15 C -0.582 4.582 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.087 4.087 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.684 -17.707 9.086 25.970 hybrid contribution 0.049 0.592 0.292 0.662 sum -16.634 -17.114 9.379 25.643 Atomic orbital electron populations 1.21740 0.93832 1.02130 1.03155 1.22437 0.95544 0.84006 0.99971 1.87885 1.21334 1.26170 1.95424 1.22573 0.80998 0.96480 1.00222 1.21977 0.95129 0.94854 0.99696 0.90033 1.22533 0.97798 0.98768 0.95950 1.23572 0.88013 0.94020 1.04078 1.64661 1.05046 1.27004 1.25655 1.22256 0.96560 0.95566 0.96187 1.20327 0.81298 0.80769 0.89113 1.90579 1.48148 1.68524 1.34977 1.46165 1.31527 1.38574 1.19257 1.19476 0.96504 0.89932 0.84121 1.21096 1.13626 1.20456 1.03011 0.90269 1.24807 0.94623 0.94605 0.98657 1.69880 1.25047 1.23153 1.34884 0.86804 0.79705 0.79595 0.83510 1.19879 1.20897 1.18460 1.22880 0.93753 1.00180 0.91882 0.91219 0.91937 0.91786 0.93421 0.93612 0.92688 0.93511 0.90738 0.91065 0.94434 0.86633 0.92073 0.88003 0.77054 0.95661 0.96233 0.92257 0.93290 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -4.05 10.21 -35.23 -0.36 -4.41 16 4 C 0.07 0.70 5.02 37.16 0.19 0.88 16 5 C -0.10 -1.01 3.26 -89.26 -0.29 -1.30 16 6 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.11 -1.34 6.48 -24.87 -0.16 -1.51 16 8 C 0.03 0.44 5.31 -1.90 -0.01 0.43 16 9 N -0.50 -6.99 5.26 -231.89 -1.22 -8.21 16 10 C 0.03 0.36 5.52 -4.97 -0.03 0.33 16 11 C 0.50 9.44 7.54 -10.98 -0.08 9.36 16 12 O -0.54 -12.09 13.52 5.56 0.08 -12.01 16 13 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 14 C 0.22 5.45 4.50 -5.19 -0.02 5.43 16 15 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 C 0.04 0.44 6.36 -2.75 -0.02 0.42 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.53 8.04 -51.93 -0.42 0.11 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 34 H 0.12 2.03 5.96 -51.93 -0.31 1.72 16 35 H 0.06 0.74 7.81 -51.93 -0.41 0.34 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.40 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.05 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -32.01 338.32 -8.11 -40.12 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.24 Total: 1.89 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.23 Total: 0.95 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.79 Total: -48.48 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.28 Total: -16.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.01 -8.11 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747966963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.790 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds