Wall clock time and date at job start Mon Mar 30 2020 01:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46793 * 2 1 4 4 C 1.42906 * 113.99760 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46934 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.27643 * 54.29864 * 5 4 3 7 7 C 1.54598 * 110.39179 * 292.14876 * 5 4 3 8 8 C 1.54932 * 102.92273 * 219.08302 * 7 5 4 9 9 N 1.48539 * 103.22489 * 37.41993 * 8 7 5 10 10 C 1.46900 * 110.99796 * 200.27757 * 9 8 7 11 11 C 1.50704 * 109.47108 * 307.39230 * 10 9 8 12 12 O 1.21277 * 120.00236 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99381 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.46573 * 180.02562 * 14 13 11 16 16 H 1.07994 * 120.00181 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99770 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00143 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00203 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47062 * 90.00058 * 19 17 15 21 21 H 1.48502 * 109.47085 * 210.00571 * 19 17 15 22 22 H 1.48504 * 109.47129 * 330.00210 * 19 17 15 23 23 C 1.47897 * 105.81843 * 320.78612 * 9 8 7 24 24 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47158 * 300.00134 * 1 2 3 26 26 H 1.08995 * 109.47547 * 59.99793 * 1 2 3 27 27 H 1.09001 * 109.47121 * 240.00422 * 2 1 3 28 28 H 1.08998 * 109.47251 * 119.99767 * 2 1 3 29 29 H 1.08993 * 109.47125 * 59.99926 * 4 3 2 30 30 H 1.09001 * 109.46838 * 299.99926 * 4 3 2 31 31 H 1.08994 * 110.72376 * 337.44853 * 7 5 4 32 32 H 1.09002 * 110.71797 * 100.72760 * 7 5 4 33 33 H 1.08999 * 110.67033 * 278.98382 * 8 7 5 34 34 H 1.09005 * 110.81115 * 155.91631 * 8 7 5 35 35 H 1.08997 * 109.47506 * 67.39044 * 10 9 8 36 36 H 1.08997 * 109.46984 * 187.39447 * 10 9 8 37 37 H 0.96998 * 120.00288 * 0.02562 * 13 11 10 38 38 H 1.08994 * 109.47452 * 299.99808 * 14 13 11 39 39 H 1.08997 * 109.47305 * 60.00454 * 14 13 11 40 40 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.92227 * 265.97847 * 23 9 8 42 42 H 1.09000 * 110.07910 * 144.77476 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 1 3.3466 3.4568 0.8310 7 6 3.4357 3.6006 -1.3415 8 6 4.6324 4.5435 -1.6229 9 7 5.8014 3.7606 -1.1465 10 6 6.9498 4.6375 -0.8820 11 6 7.2204 5.4903 -2.0947 12 8 6.5248 5.3789 -3.0819 13 7 8.2349 6.3775 -2.0818 14 6 8.4976 7.2069 -3.2606 15 6 9.6759 8.1064 -2.9893 16 1 10.1785 8.0648 -2.0343 17 6 10.1116 8.9834 -3.9599 18 7 11.1401 9.7680 -3.7234 19 14 9.2418 9.0560 -5.6115 20 1 8.1465 10.0568 -5.5506 21 1 10.2122 9.4475 -6.6652 22 1 8.6753 7.7211 -5.9318 23 6 5.3558 3.0832 0.0905 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8907 30 1 3.8340 0.9765 0.8892 31 1 3.3412 2.8519 -2.1280 32 1 2.5123 4.1701 -1.2366 33 1 4.5336 5.4700 -1.0572 34 1 4.7183 4.7526 -2.6893 35 1 6.7285 5.2788 -0.0290 36 1 7.8277 4.0300 -0.6619 37 1 8.7911 6.4669 -1.2922 38 1 8.7192 6.5660 -4.1138 39 1 7.6195 7.8142 -3.4805 40 1 11.4469 10.3847 -4.4064 41 1 5.6212 3.6850 0.9596 42 1 5.8181 2.0990 0.1655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747966963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:54 Heat of formation + Delta-G solvation = -106.396507 kcal Electronic energy + Delta-G solvation = -20535.077668 eV Core-core repulsion = 17321.022900 eV Total energy + Delta-G solvation = -3214.054768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08024 -39.71696 -38.42506 -36.15050 -34.43475 -34.02177 -31.98466 -30.45185 -30.14174 -27.78941 -25.41031 -23.99271 -23.63767 -22.34865 -21.46386 -21.06393 -19.15726 -18.05639 -17.45333 -17.34655 -17.00082 -16.66305 -16.35304 -16.31272 -15.71873 -15.13133 -15.01739 -14.62593 -14.55145 -14.17336 -14.07232 -13.59305 -13.41655 -13.12715 -13.04791 -13.01605 -12.69766 -12.50739 -12.32338 -12.14743 -11.99515 -11.94436 -11.67529 -11.65142 -11.48195 -10.92624 -10.59564 -10.46539 -9.92270 -9.37884 -8.40879 -6.47757 1.31785 1.34254 1.46889 1.73011 2.26767 2.31845 2.72965 2.94408 3.10127 3.66630 3.71146 3.96476 4.00443 4.18444 4.25571 4.34044 4.35961 4.38416 4.48077 4.52550 4.53294 4.65417 4.67356 4.78630 4.87509 4.87777 4.94394 5.02661 5.05273 5.13200 5.19668 5.26600 5.27100 5.28535 5.57058 5.85430 5.97407 6.10477 6.31656 6.53438 6.85849 7.15390 7.43690 8.73736 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052412 B = 0.002838 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.098832 B = 9863.590991 C =10240.727442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.076 3.924 5 C -0.092 4.092 6 H 0.088 0.912 7 C -0.107 4.107 8 C 0.032 3.968 9 N -0.518 5.518 10 C 0.037 3.963 11 C 0.497 3.503 12 O -0.580 6.580 13 N -0.707 5.707 14 C 0.234 3.766 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.025 3.975 18 N -0.930 5.930 19 Si 0.938 3.062 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.262 1.262 23 C 0.044 3.956 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.409 0.591 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.272 0.728 41 H 0.067 0.933 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 -19.096 11.483 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.330 6.330 4 C -0.001 4.001 5 C -0.111 4.111 6 H 0.107 0.893 7 C -0.145 4.145 8 C -0.095 4.095 9 N -0.243 5.243 10 C -0.094 4.094 11 C 0.284 3.716 12 O -0.460 6.460 13 N -0.357 5.357 14 C 0.110 3.890 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.186 1.186 23 C -0.084 4.084 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.245 0.755 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.579 -19.240 10.322 28.031 hybrid contribution 0.317 1.021 -0.031 1.070 sum -17.262 -18.218 10.292 27.126 Atomic orbital electron populations 1.21763 0.93169 1.03249 1.02554 1.22627 0.96175 0.83057 1.00759 1.87856 1.21813 1.27794 1.95581 1.22562 0.80817 0.95790 1.00914 1.21947 0.95115 0.95504 0.98518 0.89342 1.22448 0.96918 0.98159 0.96948 1.23379 0.89650 0.94703 1.01812 1.64641 1.04786 1.26884 1.27979 1.22242 0.97762 0.95552 0.93873 1.21241 0.79846 0.80245 0.90260 1.90588 1.49105 1.69402 1.36915 1.46016 1.32554 1.38656 1.18487 1.19052 0.94807 0.89616 0.85498 1.21302 1.14141 1.20725 1.02265 0.92162 1.25610 0.95292 0.94390 1.02215 1.69978 1.26508 1.24126 1.36315 0.85850 0.78912 0.79536 0.79532 1.19032 1.19794 1.18594 1.22954 0.93779 1.00806 0.90827 0.89275 0.92204 0.92688 0.93112 0.92283 0.93185 0.91546 0.91644 0.90733 0.94770 0.90323 0.89484 0.85351 0.75548 0.97140 0.97237 0.91847 0.91464 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.41 -7.85 10.21 -148.98 -1.52 -9.37 16 4 C 0.08 1.25 5.02 71.98 0.36 1.61 16 5 C -0.09 -1.68 3.26 -9.91 -0.03 -1.71 16 6 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 7 C -0.11 -2.46 6.48 31.80 0.21 -2.26 16 8 C 0.03 0.92 5.31 86.65 0.46 1.38 16 9 N -0.52 -13.49 5.26 -887.57 -4.67 -18.16 16 10 C 0.04 0.93 5.52 85.56 0.47 1.40 16 11 C 0.50 18.34 7.54 87.66 0.66 19.00 16 12 O -0.58 -25.98 13.52 -3.02 -0.04 -26.02 16 13 N -0.71 -27.99 5.55 -466.78 -2.59 -30.57 16 14 C 0.23 11.54 4.50 85.63 0.38 11.93 16 15 C -0.55 -30.24 9.83 25.60 0.25 -29.99 16 16 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 17 C 0.03 1.43 5.47 84.65 0.46 1.90 16 18 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 19 Si 0.94 44.46 27.47 68.60 1.88 46.34 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 23 C 0.04 0.78 6.36 86.45 0.55 1.33 16 24 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.87 8.04 -2.39 -0.02 0.85 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 0.97 8.02 -2.39 -0.02 0.96 16 34 H 0.08 2.85 5.96 -2.38 -0.01 2.84 16 35 H 0.09 1.81 7.81 -2.39 -0.02 1.79 16 36 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 38 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 39 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.07 1.00 7.57 -2.39 -0.02 0.98 16 42 H 0.10 1.45 7.68 -2.39 -0.02 1.43 16 Total: -1.00 -69.42 338.32 -1.48 -70.90 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.16 Total: 17.52 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.00 Total: 4.76 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -6.96 Total: -104.13 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.56 Total: -35.39 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -69.42 -1.48 -70.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747966963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.500 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds