Wall clock time and date at job start Mon Mar 30 2020 01:03:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.42898 * 109.47456 * 2 1
4 4 C 1.42907 * 114.00021 * 179.97438 * 3 2 1
5 5 C 1.52998 * 109.46913 * 180.02562 * 4 3 2
6 6 H 1.09005 * 110.64604 * 303.30699 * 5 4 3
7 7 C 1.54601 * 110.72604 * 66.45564 * 5 4 3
8 8 C 1.53987 * 105.14236 * 140.31247 * 7 5 4
9 9 N 1.47903 * 107.05701 * 1.22792 * 8 7 5
10 10 C 1.46904 * 111.00001 * 214.15370 * 9 8 7
11 11 C 1.50699 * 109.47000 * 176.63672 * 10 9 8
12 12 O 1.21280 * 120.00237 * 6.13849 * 11 10 9
13 13 N 1.34783 * 119.99855 * 186.13295 * 11 10 9
14 14 C 1.46500 * 119.99866 * 180.02562 * 13 11 10
15 15 C 1.50695 * 109.47055 * 180.02562 * 14 13 11
16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13
17 17 C 1.37872 * 120.00034 * 179.97438 * 15 14 13
18 18 N 1.31511 * 120.00413 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99818 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47170 * 180.02562 * 19 17 15
21 21 H 1.48501 * 109.47195 * 299.99711 * 19 17 15
22 22 H 1.48496 * 109.47286 * 60.00122 * 19 17 15
23 23 C 1.48530 * 105.82088 * 334.66640 * 9 8 7
24 24 H 1.09000 * 109.46726 * 299.99697 * 1 2 3
25 25 H 1.09006 * 109.47321 * 59.99694 * 1 2 3
26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.47437 * 240.00077 * 2 1 3
28 28 H 1.09002 * 109.47604 * 120.00730 * 2 1 3
29 29 H 1.08996 * 109.47031 * 60.00909 * 4 3 2
30 30 H 1.09001 * 109.47175 * 300.00068 * 4 3 2
31 31 H 1.08999 * 110.30449 * 21.39585 * 7 5 4
32 32 H 1.09000 * 110.39572 * 259.27870 * 7 5 4
33 33 H 1.09000 * 109.92222 * 241.87700 * 8 7 5
34 34 H 1.09003 * 109.91560 * 120.57772 * 8 7 5
35 35 H 1.08997 * 109.46980 * 56.63603 * 10 9 8
36 36 H 1.09001 * 109.47252 * 296.63828 * 10 9 8
37 37 H 0.96997 * 120.00027 * 0.02562 * 13 11 10
38 38 H 1.08999 * 109.47221 * 60.00177 * 14 13 11
39 39 H 1.08998 * 109.46891 * 300.00003 * 14 13 11
40 40 H 0.96998 * 120.00325 * 180.02562 * 18 17 15
41 41 H 1.09000 * 110.66305 * 157.63868 * 23 9 8
42 42 H 1.08996 * 110.66913 * 280.77683 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4309 1.4600 0.0006
5 6 3.8255 2.9382 0.0012
6 1 3.3837 3.4543 -0.8513
7 6 3.4080 3.6154 1.3268
8 6 4.5722 4.5591 1.6805
9 7 5.5716 4.4403 0.5967
10 6 6.9364 4.5823 1.1212
11 6 7.9276 4.3739 0.0053
12 8 7.5376 4.2417 -1.1354
13 7 9.2476 4.3344 0.2751
14 6 10.2112 4.1323 -0.8097
15 6 11.6087 4.1274 -0.2459
16 1 11.7636 4.2619 0.8145
17 6 12.6894 3.9513 -1.0836
18 7 12.5008 3.7871 -2.3747
19 14 14.4218 3.9460 -0.3846
20 1 15.3986 3.7411 -1.4842
21 1 14.6913 5.2463 0.2801
22 1 14.5527 2.8472 0.6056
23 6 5.3670 3.0943 0.0030
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0276 -0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8934 -0.5139 0.8899
29 1 3.8340 0.9764 -0.8892
30 1 3.8333 0.9765 0.8908
31 1 3.2764 2.8674 2.1086
32 1 2.4882 4.1841 1.1897
33 1 5.0169 4.2608 2.6299
34 1 4.2121 5.5861 1.7425
35 1 7.1052 3.8394 1.9007
36 1 7.0634 5.5815 1.5380
37 1 9.5595 4.4398 1.1875
38 1 10.1149 4.9391 -1.5362
39 1 10.0135 3.1781 -1.2981
40 1 13.2612 3.6628 -2.9640
41 1 5.7584 3.0588 -1.0137
42 1 5.8306 2.3262 0.6219
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000747966974.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:03:56
Heat of formation + Delta-G solvation = -88.223958 kcal
Electronic energy + Delta-G solvation = -20553.687789 eV
Core-core repulsion = 17340.421041 eV
Total energy + Delta-G solvation = -3213.266747 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.70136 -38.46615 -37.46220 -34.16738 -33.09512 -32.30780 -31.19148 -29.40799
-27.97191 -26.22810 -24.58178 -23.03786 -22.45495 -21.00839 -20.25847 -19.63176
-17.28304 -16.78685 -16.44467 -15.92031 -15.80047 -15.28222 -14.93680 -14.90535
-14.23995 -13.98516 -13.73656 -13.36189 -13.21684 -12.79008 -12.68957 -12.23471
-12.03954 -11.89755 -11.82891 -11.79271 -11.40789 -11.21386 -11.02843 -10.96750
-10.89214 -10.75176 -10.55188 -10.30843 -9.77225 -9.41307 -8.96945 -8.73124
-8.30526 -7.85529 -6.16761 -4.23884 3.24707 3.29536 3.30951 3.38478
3.38916 3.80645 4.26320 4.40016 4.65625 4.68615 4.77072 4.81975
4.96572 5.09029 5.16702 5.19083 5.24014 5.29061 5.37565 5.42152
5.47236 5.55225 5.60283 5.61354 5.68436 5.71361 5.81714 5.86522
6.00815 6.23326 6.32687 6.92654 6.98498 7.03384 7.32461 7.45579
7.52342 7.67407 7.97206 8.63673 8.78815 9.12689 9.42895 10.93380
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.032325 B = 0.002945 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 865.989855 B = 9504.118051 C = 9998.921667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.056 3.944
3 O -0.387 6.387
4 C 0.072 3.928
5 C -0.090 4.090
6 H 0.092 0.908
7 C -0.118 4.118
8 C 0.032 3.968
9 N -0.496 5.496
10 C 0.027 3.973
11 C 0.498 3.502
12 O -0.539 6.539
13 N -0.715 5.715
14 C 0.252 3.748
15 C -0.544 4.544
16 H 0.062 0.938
17 C 0.064 3.936
18 N -0.885 5.885
19 Si 0.904 3.096
20 H -0.285 1.285
21 H -0.275 1.275
22 H -0.276 1.276
23 C 0.043 3.957
24 H 0.062 0.938
25 H 0.063 0.937
26 H 0.069 0.931
27 H 0.048 0.952
28 H 0.046 0.954
29 H 0.053 0.947
30 H 0.047 0.953
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.043 0.957
34 H 0.080 0.920
35 H 0.057 0.943
36 H 0.101 0.899
37 H 0.389 0.611
38 H 0.027 0.973
39 H 0.026 0.974
40 H 0.266 0.734
41 H 0.108 0.892
42 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.606 -4.816 9.552 22.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.021 4.021
3 O -0.307 6.307
4 C -0.005 4.005
5 C -0.109 4.109
6 H 0.110 0.890
7 C -0.156 4.156
8 C -0.096 4.096
9 N -0.220 5.220
10 C -0.105 4.105
11 C 0.281 3.719
12 O -0.417 6.417
13 N -0.364 5.364
14 C 0.131 3.869
15 C -0.582 4.582
16 H 0.080 0.920
17 C -0.140 4.140
18 N -0.523 5.523
19 Si 0.731 3.269
20 H -0.211 1.211
21 H -0.201 1.201
22 H -0.201 1.201
23 C -0.084 4.084
24 H 0.081 0.919
25 H 0.082 0.918
26 H 0.088 0.912
27 H 0.066 0.934
28 H 0.064 0.936
29 H 0.071 0.929
30 H 0.066 0.934
31 H 0.084 0.916
32 H 0.092 0.908
33 H 0.061 0.939
34 H 0.098 0.902
35 H 0.075 0.925
36 H 0.119 0.881
37 H 0.222 0.778
38 H 0.045 0.955
39 H 0.044 0.956
40 H 0.076 0.924
41 H 0.126 0.874
42 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -19.933 -4.364 8.141 21.970
hybrid contribution 1.567 -0.826 1.454 2.292
sum -18.366 -5.190 9.595 21.361
Atomic orbital electron populations
1.21735 0.93837 1.02106 1.03106 1.22442 0.95512 0.84079 1.00031
1.87880 1.21272 1.26109 1.95431 1.22494 0.80983 0.96755 1.00280
1.22071 0.95789 0.93797 0.99267 0.88975 1.22365 0.98180 0.98198
0.96835 1.22959 0.92907 1.00614 0.93085 1.64555 1.01595 1.29237
1.26628 1.22253 0.89301 1.03054 0.95890 1.20274 0.83520 0.78146
0.89913 1.90630 1.79001 1.49872 1.22216 1.46458 1.05817 1.71479
1.12662 1.19076 0.85426 0.97212 0.85196 1.21193 0.90621 1.52047
0.94383 0.91982 1.24953 0.99601 0.94727 0.94746 1.69962 1.31606
1.47703 1.03007 0.86474 0.83223 0.78650 0.78548 1.21062 1.20054
1.20099 1.23328 0.93498 0.88933 1.02658 0.91930 0.91830 0.91240
0.93421 0.93601 0.92892 0.93434 0.91625 0.90819 0.93856 0.90209
0.92514 0.88085 0.77829 0.95526 0.95639 0.92380 0.87417 0.94192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 10.28 37.15 0.38 -0.68 16
2 C 0.06 0.48 6.66 37.15 0.25 0.73 16
3 O -0.39 -4.37 10.19 -35.23 -0.36 -4.73 16
4 C 0.07 0.79 5.26 37.16 0.20 0.98 16
5 C -0.09 -1.10 3.35 -88.76 -0.30 -1.39 16
6 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16
7 C -0.12 -1.26 6.36 -25.38 -0.16 -1.42 16
8 C 0.03 0.37 6.70 -2.76 -0.02 0.35 16
9 N -0.50 -7.33 5.11 -231.90 -1.18 -8.52 16
10 C 0.03 0.39 5.31 -4.97 -0.03 0.37 16
11 C 0.50 9.94 7.46 -10.98 -0.08 9.85 16
12 O -0.54 -12.89 14.30 5.56 0.08 -12.81 16
13 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16
14 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16
15 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16
16 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16
17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16
18 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16
19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16
20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
23 C 0.04 0.63 5.03 -1.90 -0.01 0.62 16
24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16
25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
30 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16
31 H 0.07 0.65 7.80 -51.93 -0.41 0.25 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.04 0.44 7.68 -51.93 -0.40 0.04 16
34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
35 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16
36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16
37 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16
38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
41 H 0.11 1.90 6.43 -51.93 -0.33 1.57 16
42 H 0.04 0.56 7.92 -51.93 -0.41 0.15 16
LS Contribution 343.67 15.07 5.18 5.18
Total: -1.00 -32.11 343.67 -8.46 -40.57
By element:
Atomic # 1 Polarization: 9.94 SS G_CDS: -7.33 Total: 2.61 kcal
Atomic # 6 Polarization: 2.86 SS G_CDS: -0.21 Total: 2.64 kcal
Atomic # 7 Polarization: -48.48 SS G_CDS: -0.79 Total: -49.27 kcal
Atomic # 8 Polarization: -17.26 SS G_CDS: -0.28 Total: -17.54 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -32.11 -8.46 -40.57 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000747966974.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.654 kcal
(2) G-P(sol) polarization free energy of solvation -32.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds