Wall clock time and date at job start Mon Mar 30 2020 01:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47456 * 2 1 4 4 C 1.42907 * 114.00021 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46913 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.64604 * 303.30699 * 5 4 3 7 7 C 1.54601 * 110.72604 * 66.45564 * 5 4 3 8 8 C 1.53987 * 105.14236 * 140.31247 * 7 5 4 9 9 N 1.47903 * 107.05701 * 1.22792 * 8 7 5 10 10 C 1.46904 * 111.00001 * 214.15370 * 9 8 7 11 11 C 1.50699 * 109.47000 * 176.63672 * 10 9 8 12 12 O 1.21280 * 120.00237 * 6.13849 * 11 10 9 13 13 N 1.34783 * 119.99855 * 186.13295 * 11 10 9 14 14 C 1.46500 * 119.99866 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47055 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00034 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00413 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99818 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47170 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47195 * 299.99711 * 19 17 15 22 22 H 1.48496 * 109.47286 * 60.00122 * 19 17 15 23 23 C 1.48530 * 105.82088 * 334.66640 * 9 8 7 24 24 H 1.09000 * 109.46726 * 299.99697 * 1 2 3 25 25 H 1.09006 * 109.47321 * 59.99694 * 1 2 3 26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47437 * 240.00077 * 2 1 3 28 28 H 1.09002 * 109.47604 * 120.00730 * 2 1 3 29 29 H 1.08996 * 109.47031 * 60.00909 * 4 3 2 30 30 H 1.09001 * 109.47175 * 300.00068 * 4 3 2 31 31 H 1.08999 * 110.30449 * 21.39585 * 7 5 4 32 32 H 1.09000 * 110.39572 * 259.27870 * 7 5 4 33 33 H 1.09000 * 109.92222 * 241.87700 * 8 7 5 34 34 H 1.09003 * 109.91560 * 120.57772 * 8 7 5 35 35 H 1.08997 * 109.46980 * 56.63603 * 10 9 8 36 36 H 1.09001 * 109.47252 * 296.63828 * 10 9 8 37 37 H 0.96997 * 120.00027 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47221 * 60.00177 * 14 13 11 39 39 H 1.08998 * 109.46891 * 300.00003 * 14 13 11 40 40 H 0.96998 * 120.00325 * 180.02562 * 18 17 15 41 41 H 1.09000 * 110.66305 * 157.63868 * 23 9 8 42 42 H 1.08996 * 110.66913 * 280.77683 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 1 3.3837 3.4543 -0.8513 7 6 3.4080 3.6154 1.3268 8 6 4.5722 4.5591 1.6805 9 7 5.5716 4.4403 0.5967 10 6 6.9364 4.5823 1.1212 11 6 7.9276 4.3739 0.0053 12 8 7.5376 4.2417 -1.1354 13 7 9.2476 4.3344 0.2751 14 6 10.2112 4.1323 -0.8097 15 6 11.6087 4.1274 -0.2459 16 1 11.7636 4.2619 0.8145 17 6 12.6894 3.9513 -1.0836 18 7 12.5008 3.7871 -2.3747 19 14 14.4218 3.9460 -0.3846 20 1 15.3986 3.7411 -1.4842 21 1 14.6913 5.2463 0.2801 22 1 14.5527 2.8472 0.6056 23 6 5.3670 3.0943 0.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9765 0.8908 31 1 3.2764 2.8674 2.1086 32 1 2.4882 4.1841 1.1897 33 1 5.0169 4.2608 2.6299 34 1 4.2121 5.5861 1.7425 35 1 7.1052 3.8394 1.9007 36 1 7.0634 5.5815 1.5380 37 1 9.5595 4.4398 1.1875 38 1 10.1149 4.9391 -1.5362 39 1 10.0135 3.1781 -1.2981 40 1 13.2612 3.6628 -2.9640 41 1 5.7584 3.0588 -1.0137 42 1 5.8306 2.3262 0.6219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747966974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:56 Heat of formation + Delta-G solvation = -88.223958 kcal Electronic energy + Delta-G solvation = -20553.687789 eV Core-core repulsion = 17340.421041 eV Total energy + Delta-G solvation = -3213.266747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70136 -38.46615 -37.46220 -34.16738 -33.09512 -32.30780 -31.19148 -29.40799 -27.97191 -26.22810 -24.58178 -23.03786 -22.45495 -21.00839 -20.25847 -19.63176 -17.28304 -16.78685 -16.44467 -15.92031 -15.80047 -15.28222 -14.93680 -14.90535 -14.23995 -13.98516 -13.73656 -13.36189 -13.21684 -12.79008 -12.68957 -12.23471 -12.03954 -11.89755 -11.82891 -11.79271 -11.40789 -11.21386 -11.02843 -10.96750 -10.89214 -10.75176 -10.55188 -10.30843 -9.77225 -9.41307 -8.96945 -8.73124 -8.30526 -7.85529 -6.16761 -4.23884 3.24707 3.29536 3.30951 3.38478 3.38916 3.80645 4.26320 4.40016 4.65625 4.68615 4.77072 4.81975 4.96572 5.09029 5.16702 5.19083 5.24014 5.29061 5.37565 5.42152 5.47236 5.55225 5.60283 5.61354 5.68436 5.71361 5.81714 5.86522 6.00815 6.23326 6.32687 6.92654 6.98498 7.03384 7.32461 7.45579 7.52342 7.67407 7.97206 8.63673 8.78815 9.12689 9.42895 10.93380 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.002945 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.989855 B = 9504.118051 C = 9998.921667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.387 6.387 4 C 0.072 3.928 5 C -0.090 4.090 6 H 0.092 0.908 7 C -0.118 4.118 8 C 0.032 3.968 9 N -0.496 5.496 10 C 0.027 3.973 11 C 0.498 3.502 12 O -0.539 6.539 13 N -0.715 5.715 14 C 0.252 3.748 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.285 1.285 21 H -0.275 1.275 22 H -0.276 1.276 23 C 0.043 3.957 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.389 0.611 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.108 0.892 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.606 -4.816 9.552 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.307 6.307 4 C -0.005 4.005 5 C -0.109 4.109 6 H 0.110 0.890 7 C -0.156 4.156 8 C -0.096 4.096 9 N -0.220 5.220 10 C -0.105 4.105 11 C 0.281 3.719 12 O -0.417 6.417 13 N -0.364 5.364 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.084 4.084 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.933 -4.364 8.141 21.970 hybrid contribution 1.567 -0.826 1.454 2.292 sum -18.366 -5.190 9.595 21.361 Atomic orbital electron populations 1.21735 0.93837 1.02106 1.03106 1.22442 0.95512 0.84079 1.00031 1.87880 1.21272 1.26109 1.95431 1.22494 0.80983 0.96755 1.00280 1.22071 0.95789 0.93797 0.99267 0.88975 1.22365 0.98180 0.98198 0.96835 1.22959 0.92907 1.00614 0.93085 1.64555 1.01595 1.29237 1.26628 1.22253 0.89301 1.03054 0.95890 1.20274 0.83520 0.78146 0.89913 1.90630 1.79001 1.49872 1.22216 1.46458 1.05817 1.71479 1.12662 1.19076 0.85426 0.97212 0.85196 1.21193 0.90621 1.52047 0.94383 0.91982 1.24953 0.99601 0.94727 0.94746 1.69962 1.31606 1.47703 1.03007 0.86474 0.83223 0.78650 0.78548 1.21062 1.20054 1.20099 1.23328 0.93498 0.88933 1.02658 0.91930 0.91830 0.91240 0.93421 0.93601 0.92892 0.93434 0.91625 0.90819 0.93856 0.90209 0.92514 0.88085 0.77829 0.95526 0.95639 0.92380 0.87417 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.15 0.38 -0.68 16 2 C 0.06 0.48 6.66 37.15 0.25 0.73 16 3 O -0.39 -4.37 10.19 -35.23 -0.36 -4.73 16 4 C 0.07 0.79 5.26 37.16 0.20 0.98 16 5 C -0.09 -1.10 3.35 -88.76 -0.30 -1.39 16 6 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 7 C -0.12 -1.26 6.36 -25.38 -0.16 -1.42 16 8 C 0.03 0.37 6.70 -2.76 -0.02 0.35 16 9 N -0.50 -7.33 5.11 -231.90 -1.18 -8.52 16 10 C 0.03 0.39 5.31 -4.97 -0.03 0.37 16 11 C 0.50 9.94 7.46 -10.98 -0.08 9.85 16 12 O -0.54 -12.89 14.30 5.56 0.08 -12.81 16 13 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 14 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 15 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 16 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 19 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.04 0.63 5.03 -1.90 -0.01 0.62 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.07 0.65 7.80 -51.93 -0.41 0.25 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.44 7.68 -51.93 -0.40 0.04 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.11 1.90 6.43 -51.93 -0.33 1.57 16 42 H 0.04 0.56 7.92 -51.93 -0.41 0.15 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -32.11 343.67 -8.46 -40.57 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.33 Total: 2.61 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.21 Total: 2.64 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.79 Total: -49.27 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.28 Total: -17.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.11 -8.46 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747966974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.654 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds