Wall clock time and date at job start Mon Mar 30 2020 01:03:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.42898 * 109.47456 * 2 1
4 4 C 1.42907 * 114.00021 * 179.97438 * 3 2 1
5 5 C 1.52998 * 109.46913 * 180.02562 * 4 3 2
6 6 H 1.09005 * 110.64604 * 303.30699 * 5 4 3
7 7 C 1.54601 * 110.72604 * 66.45564 * 5 4 3
8 8 C 1.53987 * 105.14236 * 140.31247 * 7 5 4
9 9 N 1.47903 * 107.05701 * 1.22792 * 8 7 5
10 10 C 1.46904 * 111.00001 * 214.15370 * 9 8 7
11 11 C 1.50699 * 109.47000 * 176.63672 * 10 9 8
12 12 O 1.21280 * 120.00237 * 6.13849 * 11 10 9
13 13 N 1.34783 * 119.99855 * 186.13295 * 11 10 9
14 14 C 1.46500 * 119.99866 * 180.02562 * 13 11 10
15 15 C 1.50695 * 109.47055 * 180.02562 * 14 13 11
16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13
17 17 C 1.37872 * 120.00034 * 179.97438 * 15 14 13
18 18 N 1.31511 * 120.00413 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99818 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47170 * 180.02562 * 19 17 15
21 21 H 1.48501 * 109.47195 * 299.99711 * 19 17 15
22 22 H 1.48496 * 109.47286 * 60.00122 * 19 17 15
23 23 C 1.48530 * 105.82088 * 334.66640 * 9 8 7
24 24 H 1.09000 * 109.46726 * 299.99697 * 1 2 3
25 25 H 1.09006 * 109.47321 * 59.99694 * 1 2 3
26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.47437 * 240.00077 * 2 1 3
28 28 H 1.09002 * 109.47604 * 120.00730 * 2 1 3
29 29 H 1.08996 * 109.47031 * 60.00909 * 4 3 2
30 30 H 1.09001 * 109.47175 * 300.00068 * 4 3 2
31 31 H 1.08999 * 110.30449 * 21.39585 * 7 5 4
32 32 H 1.09000 * 110.39572 * 259.27870 * 7 5 4
33 33 H 1.09000 * 109.92222 * 241.87700 * 8 7 5
34 34 H 1.09003 * 109.91560 * 120.57772 * 8 7 5
35 35 H 1.08997 * 109.46980 * 56.63603 * 10 9 8
36 36 H 1.09001 * 109.47252 * 296.63828 * 10 9 8
37 37 H 0.96997 * 120.00027 * 0.02562 * 13 11 10
38 38 H 1.08999 * 109.47221 * 60.00177 * 14 13 11
39 39 H 1.08998 * 109.46891 * 300.00003 * 14 13 11
40 40 H 0.96998 * 120.00325 * 180.02562 * 18 17 15
41 41 H 1.09000 * 110.66305 * 157.63868 * 23 9 8
42 42 H 1.08996 * 110.66913 * 280.77683 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4309 1.4600 0.0006
5 6 3.8255 2.9382 0.0012
6 1 3.3837 3.4543 -0.8513
7 6 3.4080 3.6154 1.3268
8 6 4.5722 4.5591 1.6805
9 7 5.5716 4.4403 0.5967
10 6 6.9364 4.5823 1.1212
11 6 7.9276 4.3739 0.0053
12 8 7.5376 4.2417 -1.1354
13 7 9.2476 4.3344 0.2751
14 6 10.2112 4.1323 -0.8097
15 6 11.6087 4.1274 -0.2459
16 1 11.7636 4.2619 0.8145
17 6 12.6894 3.9513 -1.0836
18 7 12.5008 3.7871 -2.3747
19 14 14.4218 3.9460 -0.3846
20 1 15.3986 3.7411 -1.4842
21 1 14.6913 5.2463 0.2801
22 1 14.5527 2.8472 0.6056
23 6 5.3670 3.0943 0.0030
24 1 -0.3633 0.5138 0.8900
25 1 -0.3634 0.5139 -0.8900
26 1 -0.3634 -1.0276 -0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8934 -0.5139 0.8899
29 1 3.8340 0.9764 -0.8892
30 1 3.8333 0.9765 0.8908
31 1 3.2764 2.8674 2.1086
32 1 2.4882 4.1841 1.1897
33 1 5.0169 4.2608 2.6299
34 1 4.2121 5.5861 1.7425
35 1 7.1052 3.8394 1.9007
36 1 7.0634 5.5815 1.5380
37 1 9.5595 4.4398 1.1875
38 1 10.1149 4.9391 -1.5362
39 1 10.0135 3.1781 -1.2981
40 1 13.2612 3.6628 -2.9640
41 1 5.7584 3.0588 -1.0137
42 1 5.8306 2.3262 0.6219
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000747966974.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:03:56
Heat of formation + Delta-G solvation = -112.691203 kcal
Electronic energy + Delta-G solvation = -20554.748768 eV
Core-core repulsion = 17340.421041 eV
Total energy + Delta-G solvation = -3214.327726 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.99634 -39.70134 -38.48186 -36.11044 -34.38973 -34.03643 -31.97495 -30.38165
-29.70932 -27.67290 -25.71604 -24.33375 -23.67901 -22.12945 -21.32167 -21.19924
-18.95764 -17.90083 -17.46897 -17.25690 -17.08090 -16.63524 -16.49945 -16.27278
-15.72570 -15.10373 -14.75913 -14.62298 -14.41212 -14.12152 -13.86696 -13.80163
-13.42613 -13.14534 -12.95599 -12.83593 -12.68888 -12.55294 -12.35571 -12.23230
-12.11487 -11.94796 -11.72637 -11.50995 -11.45749 -10.79172 -10.62812 -10.56049
-9.81833 -9.37260 -8.29194 -6.46114 1.42801 1.47004 1.55185 1.78577
2.27770 2.46537 2.61551 3.05457 3.14891 3.70219 3.71686 3.91095
4.04160 4.15788 4.25392 4.27450 4.30872 4.35483 4.43421 4.49087
4.50658 4.54113 4.73246 4.75861 4.87092 4.99771 5.03601 5.06682
5.11175 5.21707 5.24399 5.27228 5.31655 5.49203 5.69294 5.84366
5.86464 5.99967 6.24857 6.65029 6.94604 7.23562 7.52906 8.82803
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.032325 B = 0.002945 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 865.989855 B = 9504.118051 C = 9998.921667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.047 3.953
3 O -0.403 6.403
4 C 0.076 3.924
5 C -0.086 4.086
6 H 0.074 0.926
7 C -0.110 4.110
8 C 0.035 3.965
9 N -0.522 5.522
10 C 0.041 3.959
11 C 0.492 3.508
12 O -0.585 6.585
13 N -0.709 5.709
14 C 0.269 3.731
15 C -0.557 4.557
16 H 0.085 0.915
17 C 0.002 3.998
18 N -0.932 5.932
19 Si 0.985 3.015
20 H -0.286 1.286
21 H -0.262 1.262
22 H -0.261 1.261
23 C 0.046 3.954
24 H 0.061 0.939
25 H 0.056 0.944
26 H 0.089 0.911
27 H 0.050 0.950
28 H 0.057 0.943
29 H 0.046 0.954
30 H 0.061 0.939
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.065 0.935
34 H 0.089 0.911
35 H 0.088 0.912
36 H 0.129 0.871
37 H 0.408 0.592
38 H -0.015 1.015
39 H -0.014 1.014
40 H 0.269 0.731
41 H 0.065 0.935
42 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.797 -4.937 12.789 24.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.029 4.029
3 O -0.323 6.323
4 C -0.001 4.001
5 C -0.105 4.105
6 H 0.093 0.907
7 C -0.148 4.148
8 C -0.092 4.092
9 N -0.247 5.247
10 C -0.090 4.090
11 C 0.279 3.721
12 O -0.466 6.466
13 N -0.360 5.360
14 C 0.146 3.854
15 C -0.594 4.594
16 H 0.103 0.897
17 C -0.197 4.197
18 N -0.570 5.570
19 Si 0.808 3.192
20 H -0.212 1.212
21 H -0.186 1.186
22 H -0.186 1.186
23 C -0.082 4.082
24 H 0.080 0.920
25 H 0.075 0.925
26 H 0.108 0.892
27 H 0.068 0.932
28 H 0.076 0.924
29 H 0.065 0.935
30 H 0.079 0.921
31 H 0.098 0.902
32 H 0.097 0.903
33 H 0.083 0.917
34 H 0.108 0.892
35 H 0.106 0.894
36 H 0.147 0.853
37 H 0.244 0.756
38 H 0.003 0.997
39 H 0.004 0.996
40 H 0.077 0.923
41 H 0.084 0.916
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -20.158 -4.478 11.436 23.604
hybrid contribution 1.534 -0.800 0.385 1.773
sum -18.624 -5.278 11.821 22.681
Atomic orbital electron populations
1.21750 0.92682 1.03338 1.02737 1.22668 0.96503 0.82998 1.00710
1.87852 1.21095 1.27845 1.95550 1.22408 0.81232 0.95844 1.00627
1.21951 0.93934 0.94826 0.99795 0.90730 1.22339 0.98181 0.98315
0.95964 1.23029 0.92027 1.01429 0.92711 1.64500 1.02223 1.29272
1.28686 1.22199 0.87635 1.05505 0.93689 1.21336 0.83655 0.76245
0.90843 1.90624 1.79662 1.51443 1.24821 1.46188 1.05744 1.71852
1.12258 1.18491 0.87314 0.93576 0.86020 1.21600 0.90634 1.51673
0.95529 0.89736 1.26088 1.04821 0.93891 0.94919 1.70134 1.33178
1.48847 1.04862 0.85200 0.76674 0.79482 0.77815 1.21169 1.18632
1.18575 1.23138 0.95120 0.89426 1.00511 0.91964 0.92502 0.89230
0.93214 0.92445 0.93529 0.92125 0.90203 0.90266 0.91661 0.89231
0.89379 0.85345 0.75608 0.99729 0.99605 0.92260 0.91617 0.93586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16
2 C 0.05 0.76 6.66 71.98 0.48 1.24 16
3 O -0.40 -8.72 10.19 -148.98 -1.52 -10.24 16
4 C 0.08 1.61 5.26 71.98 0.38 1.99 16
5 C -0.09 -2.05 3.35 -9.59 -0.03 -2.09 16
6 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16
7 C -0.11 -2.10 6.36 31.47 0.20 -1.90 16
8 C 0.04 0.69 6.70 86.44 0.58 1.27 16
9 N -0.52 -14.72 5.11 -887.58 -4.54 -19.26 16
10 C 0.04 1.11 5.31 85.56 0.45 1.56 16
11 C 0.49 19.83 7.46 87.66 0.65 20.48 16
12 O -0.59 -29.37 14.30 -3.03 -0.04 -29.42 16
13 N -0.71 -29.95 5.55 -466.79 -2.59 -32.54 16
14 C 0.27 14.89 5.43 85.63 0.46 15.35 16
15 C -0.56 -30.32 9.28 25.60 0.24 -30.09 16
16 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16
17 C 0.00 0.13 5.46 84.65 0.46 0.59 16
18 N -0.93 -56.62 13.29 21.44 0.28 -56.33 16
19 Si 0.99 42.27 29.54 68.60 2.03 44.30 16
20 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16
21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16
22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16
23 C 0.05 1.35 5.03 86.65 0.44 1.78 16
24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16
31 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16
32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16
34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
35 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16
36 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16
37 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16
38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16
39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16
40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
41 H 0.07 2.48 6.43 -2.39 -0.02 2.46 16
42 H 0.05 1.26 7.92 -2.39 -0.02 1.24 16
Total: -1.00 -73.05 343.67 -1.11 -74.16
By element:
Atomic # 1 Polarization: 20.06 SS G_CDS: 0.21 Total: 20.28 kcal
Atomic # 6 Polarization: 4.00 SS G_CDS: 5.05 Total: 9.06 kcal
Atomic # 7 Polarization: -101.29 SS G_CDS: -6.84 Total: -108.13 kcal
Atomic # 8 Polarization: -38.09 SS G_CDS: -1.56 Total: -39.65 kcal
Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal
Total: -73.05 -1.11 -74.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000747966974.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.536 kcal
(2) G-P(sol) polarization free energy of solvation -73.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.691 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds