Wall clock time and date at job start Mon Mar 30 2020 01:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47456 * 2 1 4 4 C 1.42907 * 114.00021 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46913 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.64604 * 303.30699 * 5 4 3 7 7 C 1.54601 * 110.72604 * 66.45564 * 5 4 3 8 8 C 1.53987 * 105.14236 * 140.31247 * 7 5 4 9 9 N 1.47903 * 107.05701 * 1.22792 * 8 7 5 10 10 C 1.46904 * 111.00001 * 214.15370 * 9 8 7 11 11 C 1.50699 * 109.47000 * 176.63672 * 10 9 8 12 12 O 1.21280 * 120.00237 * 6.13849 * 11 10 9 13 13 N 1.34783 * 119.99855 * 186.13295 * 11 10 9 14 14 C 1.46500 * 119.99866 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47055 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00034 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00413 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99818 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47170 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47195 * 299.99711 * 19 17 15 22 22 H 1.48496 * 109.47286 * 60.00122 * 19 17 15 23 23 C 1.48530 * 105.82088 * 334.66640 * 9 8 7 24 24 H 1.09000 * 109.46726 * 299.99697 * 1 2 3 25 25 H 1.09006 * 109.47321 * 59.99694 * 1 2 3 26 26 H 1.08997 * 109.47375 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47437 * 240.00077 * 2 1 3 28 28 H 1.09002 * 109.47604 * 120.00730 * 2 1 3 29 29 H 1.08996 * 109.47031 * 60.00909 * 4 3 2 30 30 H 1.09001 * 109.47175 * 300.00068 * 4 3 2 31 31 H 1.08999 * 110.30449 * 21.39585 * 7 5 4 32 32 H 1.09000 * 110.39572 * 259.27870 * 7 5 4 33 33 H 1.09000 * 109.92222 * 241.87700 * 8 7 5 34 34 H 1.09003 * 109.91560 * 120.57772 * 8 7 5 35 35 H 1.08997 * 109.46980 * 56.63603 * 10 9 8 36 36 H 1.09001 * 109.47252 * 296.63828 * 10 9 8 37 37 H 0.96997 * 120.00027 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47221 * 60.00177 * 14 13 11 39 39 H 1.08998 * 109.46891 * 300.00003 * 14 13 11 40 40 H 0.96998 * 120.00325 * 180.02562 * 18 17 15 41 41 H 1.09000 * 110.66305 * 157.63868 * 23 9 8 42 42 H 1.08996 * 110.66913 * 280.77683 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 1 3.3837 3.4543 -0.8513 7 6 3.4080 3.6154 1.3268 8 6 4.5722 4.5591 1.6805 9 7 5.5716 4.4403 0.5967 10 6 6.9364 4.5823 1.1212 11 6 7.9276 4.3739 0.0053 12 8 7.5376 4.2417 -1.1354 13 7 9.2476 4.3344 0.2751 14 6 10.2112 4.1323 -0.8097 15 6 11.6087 4.1274 -0.2459 16 1 11.7636 4.2619 0.8145 17 6 12.6894 3.9513 -1.0836 18 7 12.5008 3.7871 -2.3747 19 14 14.4218 3.9460 -0.3846 20 1 15.3986 3.7411 -1.4842 21 1 14.6913 5.2463 0.2801 22 1 14.5527 2.8472 0.6056 23 6 5.3670 3.0943 0.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9764 -0.8892 30 1 3.8333 0.9765 0.8908 31 1 3.2764 2.8674 2.1086 32 1 2.4882 4.1841 1.1897 33 1 5.0169 4.2608 2.6299 34 1 4.2121 5.5861 1.7425 35 1 7.1052 3.8394 1.9007 36 1 7.0634 5.5815 1.5380 37 1 9.5595 4.4398 1.1875 38 1 10.1149 4.9391 -1.5362 39 1 10.0135 3.1781 -1.2981 40 1 13.2612 3.6628 -2.9640 41 1 5.7584 3.0588 -1.0137 42 1 5.8306 2.3262 0.6219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747966974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:56 Heat of formation + Delta-G solvation = -112.691203 kcal Electronic energy + Delta-G solvation = -20554.748768 eV Core-core repulsion = 17340.421041 eV Total energy + Delta-G solvation = -3214.327726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99634 -39.70134 -38.48186 -36.11044 -34.38973 -34.03643 -31.97495 -30.38165 -29.70932 -27.67290 -25.71604 -24.33375 -23.67901 -22.12945 -21.32167 -21.19924 -18.95764 -17.90083 -17.46897 -17.25690 -17.08090 -16.63524 -16.49945 -16.27278 -15.72570 -15.10373 -14.75913 -14.62298 -14.41212 -14.12152 -13.86696 -13.80163 -13.42613 -13.14534 -12.95599 -12.83593 -12.68888 -12.55294 -12.35571 -12.23230 -12.11487 -11.94796 -11.72637 -11.50995 -11.45749 -10.79172 -10.62812 -10.56049 -9.81833 -9.37260 -8.29194 -6.46114 1.42801 1.47004 1.55185 1.78577 2.27770 2.46537 2.61551 3.05457 3.14891 3.70219 3.71686 3.91095 4.04160 4.15788 4.25392 4.27450 4.30872 4.35483 4.43421 4.49087 4.50658 4.54113 4.73246 4.75861 4.87092 4.99771 5.03601 5.06682 5.11175 5.21707 5.24399 5.27228 5.31655 5.49203 5.69294 5.84366 5.86464 5.99967 6.24857 6.65029 6.94604 7.23562 7.52906 8.82803 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.002945 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.989855 B = 9504.118051 C = 9998.921667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.403 6.403 4 C 0.076 3.924 5 C -0.086 4.086 6 H 0.074 0.926 7 C -0.110 4.110 8 C 0.035 3.965 9 N -0.522 5.522 10 C 0.041 3.959 11 C 0.492 3.508 12 O -0.585 6.585 13 N -0.709 5.709 14 C 0.269 3.731 15 C -0.557 4.557 16 H 0.085 0.915 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.286 1.286 21 H -0.262 1.262 22 H -0.261 1.261 23 C 0.046 3.954 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.408 0.592 38 H -0.015 1.015 39 H -0.014 1.014 40 H 0.269 0.731 41 H 0.065 0.935 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 -4.937 12.789 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.323 6.323 4 C -0.001 4.001 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.148 4.148 8 C -0.092 4.092 9 N -0.247 5.247 10 C -0.090 4.090 11 C 0.279 3.721 12 O -0.466 6.466 13 N -0.360 5.360 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.103 0.897 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.212 1.212 21 H -0.186 1.186 22 H -0.186 1.186 23 C -0.082 4.082 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.244 0.756 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.158 -4.478 11.436 23.604 hybrid contribution 1.534 -0.800 0.385 1.773 sum -18.624 -5.278 11.821 22.681 Atomic orbital electron populations 1.21750 0.92682 1.03338 1.02737 1.22668 0.96503 0.82998 1.00710 1.87852 1.21095 1.27845 1.95550 1.22408 0.81232 0.95844 1.00627 1.21951 0.93934 0.94826 0.99795 0.90730 1.22339 0.98181 0.98315 0.95964 1.23029 0.92027 1.01429 0.92711 1.64500 1.02223 1.29272 1.28686 1.22199 0.87635 1.05505 0.93689 1.21336 0.83655 0.76245 0.90843 1.90624 1.79662 1.51443 1.24821 1.46188 1.05744 1.71852 1.12258 1.18491 0.87314 0.93576 0.86020 1.21600 0.90634 1.51673 0.95529 0.89736 1.26088 1.04821 0.93891 0.94919 1.70134 1.33178 1.48847 1.04862 0.85200 0.76674 0.79482 0.77815 1.21169 1.18632 1.18575 1.23138 0.95120 0.89426 1.00511 0.91964 0.92502 0.89230 0.93214 0.92445 0.93529 0.92125 0.90203 0.90266 0.91661 0.89231 0.89379 0.85345 0.75608 0.99729 0.99605 0.92260 0.91617 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -8.72 10.19 -148.98 -1.52 -10.24 16 4 C 0.08 1.61 5.26 71.98 0.38 1.99 16 5 C -0.09 -2.05 3.35 -9.59 -0.03 -2.09 16 6 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 7 C -0.11 -2.10 6.36 31.47 0.20 -1.90 16 8 C 0.04 0.69 6.70 86.44 0.58 1.27 16 9 N -0.52 -14.72 5.11 -887.58 -4.54 -19.26 16 10 C 0.04 1.11 5.31 85.56 0.45 1.56 16 11 C 0.49 19.83 7.46 87.66 0.65 20.48 16 12 O -0.59 -29.37 14.30 -3.03 -0.04 -29.42 16 13 N -0.71 -29.95 5.55 -466.79 -2.59 -32.54 16 14 C 0.27 14.89 5.43 85.63 0.46 15.35 16 15 C -0.56 -30.32 9.28 25.60 0.24 -30.09 16 16 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -56.62 13.29 21.44 0.28 -56.33 16 19 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 C 0.05 1.35 5.03 86.65 0.44 1.78 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.08 1.32 7.80 -2.39 -0.02 1.30 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16 36 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.41 13.97 8.32 -92.71 -0.77 13.20 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.07 2.48 6.43 -2.39 -0.02 2.46 16 42 H 0.05 1.26 7.92 -2.39 -0.02 1.24 16 Total: -1.00 -73.05 343.67 -1.11 -74.16 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.21 Total: 20.28 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.05 Total: 9.06 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -6.84 Total: -108.13 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.56 Total: -39.65 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -73.05 -1.11 -74.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747966974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.536 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds