Wall clock time and date at job start Mon Mar 30 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 3 17 17 N 1.46896 * 109.47255 * 179.97438 * 16 15 13 18 18 C 1.47011 * 111.00147 * 293.63572 * 17 16 15 19 19 C 1.53094 * 109.25974 * 177.60789 * 18 17 16 20 20 O 1.43021 * 109.25896 * 56.84664 * 19 18 17 21 21 C 1.43018 * 113.73452 * 301.32819 * 20 19 18 22 22 C 1.47014 * 111.00110 * 169.99532 * 17 16 15 23 23 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 25 25 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 26 26 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 27 27 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 29 29 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 30 30 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 32 32 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 33 33 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 34 34 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 35 35 H 1.09000 * 109.50332 * 297.54157 * 18 17 16 36 36 H 1.08997 * 109.50991 * 57.67014 * 18 17 16 37 37 H 1.09001 * 109.50572 * 296.91080 * 19 18 17 38 38 H 1.09001 * 109.54430 * 176.80128 * 19 18 17 39 39 H 1.08991 * 109.50838 * 298.73244 * 21 20 19 40 40 H 1.09003 * 109.53416 * 178.62445 * 21 20 19 41 41 H 1.09003 * 109.50880 * 302.33143 * 22 17 16 42 42 H 1.09008 * 109.50352 * 62.41683 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3342 2.2398 3.6351 17 7 2.0946 1.5456 4.9073 18 6 0.6632 1.2672 5.0942 19 6 0.4656 0.4924 6.3997 20 8 1.0167 1.2458 7.4834 21 6 2.4095 1.5342 7.3344 22 6 2.6268 2.3195 6.0383 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6876 -2.0285 29 1 2.0956 3.1410 -1.1385 30 1 5.7176 2.5736 -4.0832 31 1 0.9499 1.0100 2.5343 32 1 2.6281 0.4167 2.5258 33 1 3.3820 2.5341 3.5732 34 1 1.7039 3.1274 3.5816 35 1 0.1129 2.2069 5.1417 36 1 0.2961 0.6717 4.2584 37 1 0.9716 -0.4706 6.3315 38 1 -0.5989 0.3330 6.5716 39 1 2.9720 0.6015 7.2934 40 1 2.7514 2.1285 8.1817 41 1 3.6930 2.4921 5.8916 42 1 2.1083 3.2764 6.1005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752815450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:34 Heat of formation + Delta-G solvation = -75.792177 kcal Electronic energy + Delta-G solvation = -21394.139508 eV Core-core repulsion = 18181.411843 eV Total energy + Delta-G solvation = -3212.727665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86062 -39.06742 -36.15068 -35.35002 -32.78329 -31.59498 -31.10928 -30.27507 -28.05211 -26.64808 -24.22499 -23.29620 -22.97133 -21.45987 -20.47593 -18.29028 -17.07087 -16.90421 -16.35094 -15.99488 -15.65122 -15.55454 -15.24924 -14.75365 -14.54365 -14.03354 -13.93794 -13.49061 -13.12711 -12.87949 -12.49671 -12.45380 -12.11301 -12.08306 -11.80979 -11.60530 -11.50730 -11.41259 -10.98908 -10.87280 -10.77657 -10.55796 -10.49256 -10.15939 -9.87818 -9.54276 -9.01184 -8.59031 -8.53183 -7.72613 -6.08848 -4.07425 3.28473 3.33466 3.34636 3.36244 3.46577 3.66539 3.98243 4.39311 4.66617 4.79174 4.80527 4.94698 5.04486 5.08805 5.20477 5.23027 5.25088 5.30233 5.33380 5.42372 5.53059 5.58252 5.63705 5.64609 5.73931 5.79756 5.93078 6.04957 6.07958 6.14386 6.39237 6.70928 6.80267 6.82975 6.91944 6.95297 7.35203 7.61381 8.25751 8.47160 8.92784 8.98901 9.51599 11.04593 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.003935 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.466002 B = 7113.079840 C = 7571.112903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.216 3.784 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.545 6.545 15 C -0.135 4.135 16 C 0.072 3.928 17 N -0.539 5.539 18 C 0.012 3.988 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.017 3.983 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -5.495 17.005 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.324 5.324 4 C 0.095 3.905 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.423 6.423 15 C -0.175 4.175 16 C -0.056 4.056 17 N -0.264 5.264 18 C -0.116 4.116 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.111 4.111 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.491 -5.232 16.976 20.630 hybrid contribution -0.679 1.155 -1.043 1.698 sum -11.171 -4.077 15.933 19.881 Atomic orbital electron populations 1.22226 0.96858 1.01552 1.02109 1.21446 0.93305 0.83857 1.03206 1.47938 1.64052 1.13383 1.07040 1.19635 0.97283 0.93347 0.80195 1.21340 0.95361 1.32840 1.07128 0.90761 1.24862 0.94995 0.95818 0.97360 1.69901 1.15137 1.45025 1.23564 0.86848 0.81457 0.81607 0.79756 1.19937 1.21063 1.19107 1.20302 0.78146 0.86868 0.85186 1.90667 1.45849 1.18362 1.87377 1.21652 1.03127 1.00260 0.92471 1.21835 1.02764 0.94446 0.86514 1.62199 1.14966 1.46865 1.02379 1.22857 0.89234 1.00361 0.99144 1.22668 0.99103 0.94153 0.85353 1.87969 1.24111 1.74618 1.44021 1.22668 0.82444 0.99450 0.96689 1.22772 1.01437 0.95624 0.91243 0.91958 0.93094 0.92294 0.89779 0.91208 0.95335 0.94696 0.92575 0.89730 0.88478 0.89571 0.93860 0.93920 0.89328 0.92199 0.88586 0.92188 0.88527 0.89345 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.62 5.94 -4.04 -0.02 1.59 16 3 N -0.59 -12.05 2.46 -175.06 -0.43 -12.47 16 4 C 0.22 5.29 4.23 -5.20 -0.02 5.27 16 5 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 6 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.51 10.20 7.67 -10.98 -0.08 10.12 16 14 O -0.54 -13.31 15.56 5.55 0.09 -13.22 16 15 C -0.13 -1.94 4.19 -27.88 -0.12 -2.05 16 16 C 0.07 1.02 4.25 -3.83 -0.02 1.00 16 17 N -0.54 -6.34 4.73 -234.31 -1.11 -7.45 16 18 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 19 C 0.06 0.58 7.01 37.21 0.26 0.84 16 20 O -0.39 -4.24 10.83 -35.23 -0.38 -4.62 16 21 C 0.06 0.60 7.01 37.21 0.26 0.86 16 22 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.59 7.24 -51.93 -0.38 0.21 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 27 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 28 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 29 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.08 1.02 5.59 -51.93 -0.29 0.73 16 32 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 33 H 0.09 1.34 8.00 -51.93 -0.42 0.92 16 34 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.81 6.38 -51.93 -0.33 0.48 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -34.27 333.52 -7.63 -41.90 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.09 Total: -1.78 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 0.16 Total: 2.63 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.76 Total: -46.94 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.30 Total: -17.84 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.27 -7.63 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752815450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.890 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds