Wall clock time and date at job start Mon Mar 30 2020 00:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 3 17 17 N 1.46896 * 109.47255 * 179.97438 * 16 15 13 18 18 C 1.47011 * 111.00147 * 293.63572 * 17 16 15 19 19 C 1.53094 * 109.25974 * 177.60789 * 18 17 16 20 20 O 1.43021 * 109.25896 * 56.84664 * 19 18 17 21 21 C 1.43018 * 113.73452 * 301.32819 * 20 19 18 22 22 C 1.47014 * 111.00110 * 169.99532 * 17 16 15 23 23 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 25 25 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 26 26 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 27 27 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 29 29 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 30 30 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 32 32 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 33 33 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 34 34 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 35 35 H 1.09000 * 109.50332 * 297.54157 * 18 17 16 36 36 H 1.08997 * 109.50991 * 57.67014 * 18 17 16 37 37 H 1.09001 * 109.50572 * 296.91080 * 19 18 17 38 38 H 1.09001 * 109.54430 * 176.80128 * 19 18 17 39 39 H 1.08991 * 109.50838 * 298.73244 * 21 20 19 40 40 H 1.09003 * 109.53416 * 178.62445 * 21 20 19 41 41 H 1.09003 * 109.50880 * 302.33143 * 22 17 16 42 42 H 1.09008 * 109.50352 * 62.41683 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3342 2.2398 3.6351 17 7 2.0946 1.5456 4.9073 18 6 0.6632 1.2672 5.0942 19 6 0.4656 0.4924 6.3997 20 8 1.0167 1.2458 7.4834 21 6 2.4095 1.5342 7.3344 22 6 2.6268 2.3195 6.0383 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6876 -2.0285 29 1 2.0956 3.1410 -1.1385 30 1 5.7176 2.5736 -4.0832 31 1 0.9499 1.0100 2.5343 32 1 2.6281 0.4167 2.5258 33 1 3.3820 2.5341 3.5732 34 1 1.7039 3.1274 3.5816 35 1 0.1129 2.2069 5.1417 36 1 0.2961 0.6717 4.2584 37 1 0.9716 -0.4706 6.3315 38 1 -0.5989 0.3330 6.5716 39 1 2.9720 0.6015 7.2934 40 1 2.7514 2.1285 8.1817 41 1 3.6930 2.4921 5.8916 42 1 2.1083 3.2764 6.1005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752815450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:33 Heat of formation + Delta-G solvation = -101.594426 kcal Electronic energy + Delta-G solvation = -21395.258378 eV Core-core repulsion = 18181.411843 eV Total energy + Delta-G solvation = -3213.846534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02502 -40.29372 -37.24268 -36.81265 -34.88413 -32.74424 -32.07306 -31.63173 -29.67672 -27.82298 -25.00181 -24.86191 -24.28804 -22.86860 -21.33321 -19.80277 -19.11805 -18.25401 -17.27897 -17.14458 -17.07517 -16.71870 -16.24199 -15.98230 -15.64324 -15.59479 -15.04466 -14.71765 -14.61064 -14.29418 -14.06499 -13.70700 -13.37070 -13.33600 -13.12775 -13.01079 -12.56357 -12.54576 -12.40059 -12.30833 -12.03747 -11.91727 -11.78991 -11.75266 -11.45497 -10.84571 -10.69778 -10.63608 -9.47980 -9.42132 -8.35358 -6.40341 1.30908 1.35021 1.43438 1.78081 2.21311 2.29552 2.77220 2.98559 2.99525 3.74172 3.79126 3.94065 4.00513 4.08836 4.13601 4.21771 4.33730 4.37488 4.41390 4.48597 4.61960 4.65982 4.74289 4.76358 4.83191 4.84866 4.90962 4.91455 4.96976 5.01274 5.02871 5.06137 5.39729 5.46486 5.65597 5.84120 5.93195 6.19451 6.22940 6.61049 6.70834 7.20283 7.41239 8.81668 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.003935 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.466002 B = 7113.079840 C = 7571.112903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.225 3.775 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.498 3.502 14 O -0.599 6.599 15 C -0.116 4.116 16 C 0.080 3.920 17 N -0.538 5.538 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.406 6.406 21 C 0.067 3.933 22 C 0.014 3.986 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.016 0.984 30 H 0.268 0.732 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 -6.750 17.807 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.287 3.713 14 O -0.481 6.481 15 C -0.156 4.156 16 C -0.048 4.048 17 N -0.263 5.263 18 C -0.119 4.119 19 C -0.013 4.013 20 O -0.325 6.325 21 C -0.009 4.009 22 C -0.114 4.114 23 H 0.114 0.886 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.140 -6.547 17.803 23.076 hybrid contribution 0.216 1.487 -1.222 1.937 sum -12.924 -5.060 16.581 21.623 Atomic orbital electron populations 1.22152 0.93867 1.03707 1.02049 1.21794 0.95684 0.80992 1.04014 1.48079 1.63969 1.15241 1.05773 1.19277 0.94758 0.92946 0.82759 1.21580 0.97120 1.32078 1.06743 0.95311 1.25856 0.96719 0.97190 0.98956 1.70053 1.17409 1.46573 1.24494 0.85718 0.80463 0.78954 0.77831 1.20279 1.19877 1.16160 1.21319 0.76752 0.86479 0.86781 1.90635 1.48223 1.20987 1.88273 1.21570 1.05453 0.99700 0.88868 1.21631 1.01065 0.94163 0.87958 1.62222 1.16350 1.46250 1.01512 1.22988 0.87854 1.00417 1.00597 1.22816 1.00435 0.93868 0.84161 1.87951 1.24776 1.74949 1.44816 1.22743 0.82052 0.99758 0.96377 1.22860 1.01436 0.95485 0.91645 0.88633 0.91873 0.93667 0.91120 0.88397 0.93432 0.96611 0.92256 0.86294 0.86981 0.91862 0.95428 0.94807 0.87729 0.91474 0.86506 0.91616 0.86770 0.89182 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.60 16 2 C 0.10 2.76 5.94 86.38 0.51 3.27 16 3 N -0.60 -24.09 2.46 -826.15 -2.03 -26.11 16 4 C 0.23 11.06 4.23 85.63 0.36 11.42 16 5 C -0.54 -31.93 9.94 25.60 0.25 -31.68 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.64 5.47 84.66 0.46 1.10 16 8 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 9 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 13 C 0.50 19.94 7.67 87.66 0.67 20.61 16 14 O -0.60 -30.25 15.56 -3.04 -0.05 -30.30 16 15 C -0.12 -3.13 4.19 29.85 0.13 -3.00 16 16 C 0.08 2.23 4.25 86.30 0.37 2.59 16 17 N -0.54 -11.83 4.73 -895.24 -4.23 -16.06 16 18 C 0.01 0.16 5.44 86.31 0.47 0.63 16 19 C 0.06 0.97 7.01 72.01 0.50 1.48 16 20 O -0.41 -7.96 10.83 -148.98 -1.61 -9.57 16 21 C 0.07 1.13 7.01 72.01 0.50 1.63 16 22 C 0.01 0.28 5.64 86.31 0.49 0.77 16 23 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.18 7.24 -2.39 -0.02 1.16 16 25 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 27 H 0.10 2.21 6.43 -2.39 -0.02 2.20 16 28 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 29 H 0.02 0.84 6.85 -2.38 -0.02 0.82 16 30 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 31 H 0.12 2.40 5.59 -2.38 -0.01 2.39 16 32 H 0.11 2.75 7.40 -2.39 -0.02 2.73 16 33 H 0.06 2.03 8.00 -2.38 -0.02 2.01 16 34 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 1.49 6.38 -2.39 -0.02 1.48 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 42 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -78.22 333.52 0.65 -77.57 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.93 Total: 11.45 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.46 Total: 6.23 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -5.96 Total: -102.13 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.66 Total: -39.87 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -78.22 0.65 -77.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752815450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.020 kcal (2) G-P(sol) polarization free energy of solvation -78.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds