Wall clock time and date at job start Mon Mar 30 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 N 1.46305 * 113.99890 * 180.02562 * 3 2 1 5 5 C 1.46846 * 110.99959 * 244.21256 * 4 3 2 6 6 C 1.53039 * 109.52413 * 174.16016 * 5 4 3 7 7 C 1.53123 * 109.27661 * 59.17609 * 6 5 4 8 8 C 1.52994 * 109.52456 * 182.44055 * 7 6 5 9 9 C 1.50704 * 109.47319 * 294.69015 * 8 7 6 10 10 O 1.21275 * 119.99859 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99923 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47027 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00152 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99976 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99706 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46971 * 90.00040 * 17 15 13 19 19 H 1.48495 * 109.46632 * 209.99701 * 17 15 13 20 20 H 1.48491 * 109.47187 * 329.99780 * 17 15 13 21 21 C 1.53113 * 109.16322 * 302.35146 * 7 6 5 22 22 C 1.46843 * 110.99837 * 120.00436 * 4 3 2 23 23 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 28 28 H 1.09003 * 109.46040 * 294.17671 * 5 4 3 29 29 H 1.09000 * 109.46335 * 54.14775 * 5 4 3 30 30 H 1.09001 * 109.50332 * 299.24090 * 6 5 4 31 31 H 1.08992 * 109.54049 * 179.14142 * 6 5 4 32 32 H 1.08998 * 109.57185 * 62.28447 * 7 6 5 33 33 H 1.09001 * 109.46974 * 54.68370 * 8 7 6 34 34 H 1.08996 * 109.47797 * 174.68308 * 8 7 6 35 35 H 0.97002 * 120.00342 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46874 * 299.99934 * 12 11 9 37 37 H 1.09000 * 109.47171 * 60.00118 * 12 11 9 38 38 H 0.97000 * 119.99709 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.50330 * 297.71146 * 21 7 6 40 40 H 1.08999 * 109.53597 * 177.61426 * 21 7 6 41 41 H 1.09003 * 109.45863 * 305.85439 * 22 4 3 42 42 H 1.08999 * 109.46347 * 65.83252 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4648 1.4628 -0.0006 5 6 3.9429 2.0987 1.2337 6 6 5.4727 2.0712 1.2638 7 6 6.0158 2.8153 0.0407 8 6 7.5438 2.7392 0.0328 9 6 8.0903 3.4879 1.2210 10 8 7.3323 4.0295 1.9974 11 7 9.4215 3.5557 1.4208 12 6 9.9527 4.2841 2.5756 13 6 11.4578 4.2090 2.5678 14 1 11.9677 3.6720 1.7815 15 6 12.1840 4.8258 3.5644 16 7 13.4974 4.7598 3.5579 17 14 11.3021 5.7551 4.9239 18 1 11.0134 4.8301 6.0491 19 1 12.1639 6.8650 5.4042 20 1 10.0283 6.3090 4.3991 21 6 5.4644 2.1631 -1.2301 22 6 3.9348 2.1879 -1.1879 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.5974 3.1319 1.2672 29 1 3.5530 1.5573 2.0957 30 1 5.8186 1.0377 1.2442 31 1 5.8282 2.5567 2.1726 32 1 5.7033 3.8588 0.0796 33 1 7.8559 1.6962 0.0858 34 1 7.9252 3.1862 -0.8852 35 1 10.0278 3.1222 0.8000 36 1 9.6410 5.3272 2.5219 37 1 9.5710 3.8376 3.4937 38 1 14.0083 5.1941 4.2589 39 1 5.8101 1.1310 -1.2890 40 1 5.8133 2.7141 -2.1035 41 1 3.5389 1.7113 -2.0847 42 1 3.5895 3.2208 -1.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:09 Heat of formation + Delta-G solvation = -58.014652 kcal Electronic energy + Delta-G solvation = -20743.888969 eV Core-core repulsion = 17531.932196 eV Total energy + Delta-G solvation = -3211.956773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64857 -38.29883 -36.47737 -34.32793 -33.07230 -32.35811 -30.97222 -30.66521 -28.59209 -26.78531 -23.28719 -23.07718 -22.56067 -21.55284 -19.87248 -19.65125 -17.49796 -17.22480 -15.99942 -15.82319 -15.45828 -15.30045 -14.87132 -14.66202 -14.36071 -13.95704 -13.75112 -13.55892 -13.37637 -12.72948 -12.57362 -12.46134 -12.42641 -12.29094 -11.89031 -11.78614 -11.55152 -11.28454 -11.03106 -10.80734 -10.74290 -10.59262 -10.41234 -9.99051 -9.95564 -9.50748 -9.11116 -8.84506 -8.78957 -8.14670 -6.22835 -4.25073 2.36014 3.22656 3.26581 3.32351 3.40587 3.96888 4.32112 4.47219 4.70947 4.77908 4.86304 4.88020 5.02739 5.05750 5.12455 5.20558 5.21814 5.33432 5.41932 5.47230 5.54032 5.55045 5.64195 5.68467 5.77046 5.80053 5.84271 5.88808 5.93983 6.06436 6.30833 6.40204 6.69398 6.80427 6.92408 7.06110 7.22740 7.38975 8.12619 8.51473 8.74095 8.93914 9.37481 10.89126 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.003042 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.704811 B = 9203.128227 C = 9592.312896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.269 6.269 4 N -0.363 5.363 5 C 0.045 3.955 6 C -0.113 4.113 7 C -0.075 4.075 8 C -0.137 4.137 9 C 0.499 3.501 10 O -0.558 6.558 11 N -0.707 5.707 12 C 0.220 3.780 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.109 4.109 22 C 0.045 3.955 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.268 0.732 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.345 -8.989 -10.161 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.273 6.273 4 N -0.132 5.132 5 C -0.083 4.083 6 C -0.150 4.150 7 C -0.094 4.094 8 C -0.177 4.177 9 C 0.284 3.716 10 O -0.438 6.438 11 N -0.355 5.355 12 C 0.098 3.902 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.147 4.147 22 C -0.083 4.083 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.230 0.770 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.643 -8.834 -9.504 24.383 hybrid contribution -0.141 0.936 0.479 1.061 sum -20.784 -7.898 -9.025 23.996 Atomic orbital electron populations 1.21776 0.93879 1.02324 1.02840 1.22255 0.93670 0.84482 1.00531 1.90671 1.13304 1.26432 1.96926 1.67525 0.91292 1.50776 1.03565 1.22417 0.96123 0.98159 0.91585 1.21816 0.91967 1.00998 1.00259 1.20986 0.93334 1.00672 0.94439 1.21710 0.96223 1.01773 0.97964 1.20571 0.82962 0.81160 0.86882 1.90605 1.57652 1.47808 1.47732 1.46229 1.05917 1.54077 1.29293 1.19476 0.94702 0.91901 0.84157 1.21106 0.88570 1.35943 1.12562 0.90274 1.24810 0.94753 0.95497 0.97635 1.69880 1.05291 1.43663 1.34130 0.86806 0.80273 0.80117 0.82423 1.19855 1.20915 1.18534 1.21695 0.92761 1.02100 0.98134 1.22351 0.95669 0.97350 0.92972 0.92041 0.92103 0.90869 0.93230 0.93266 0.93708 0.90263 0.91461 0.88197 0.90316 0.89090 0.89130 0.77016 0.95802 0.96222 0.92262 0.90688 0.90478 0.90204 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.07 0.65 7.16 37.16 0.27 0.91 16 3 O -0.27 -3.34 10.60 -13.93 -0.15 -3.49 16 4 N -0.36 -4.36 5.00 -113.82 -0.57 -4.93 16 5 C 0.05 0.56 5.99 -3.83 -0.02 0.54 16 6 C -0.11 -1.44 5.09 -26.65 -0.14 -1.58 16 7 C -0.08 -0.90 1.90 -90.50 -0.17 -1.08 16 8 C -0.14 -1.69 5.18 -27.88 -0.14 -1.83 16 9 C 0.50 8.93 7.56 -10.99 -0.08 8.85 16 10 O -0.56 -11.88 13.99 5.56 0.08 -11.81 16 11 N -0.71 -13.90 5.55 -61.47 -0.34 -14.25 16 12 C 0.22 5.35 4.50 -5.19 -0.02 5.33 16 13 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 14 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 17 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 21 C -0.11 -1.03 5.38 -26.65 -0.14 -1.17 16 22 C 0.04 0.47 5.99 -3.84 -0.02 0.45 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.55 6.04 -51.93 -0.31 1.24 16 32 H 0.08 1.08 7.95 -51.93 -0.41 0.66 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 37 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -31.80 338.86 -7.63 -39.43 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.33 Total: 2.24 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.54 Total: -3.39 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.14 Total: -44.83 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.07 Total: -15.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.80 -7.63 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.583 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds