Wall clock time and date at job start Mon Mar 30 2020 01:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 N 1.46305 * 113.99890 * 180.02562 * 3 2 1 5 5 C 1.46846 * 110.99959 * 244.21256 * 4 3 2 6 6 C 1.53039 * 109.52413 * 174.16016 * 5 4 3 7 7 C 1.53123 * 109.27661 * 59.17609 * 6 5 4 8 8 C 1.52994 * 109.52456 * 182.44055 * 7 6 5 9 9 C 1.50704 * 109.47319 * 294.69015 * 8 7 6 10 10 O 1.21275 * 119.99859 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00042 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99923 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47027 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00152 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99968 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99976 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99706 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46971 * 90.00040 * 17 15 13 19 19 H 1.48495 * 109.46632 * 209.99701 * 17 15 13 20 20 H 1.48491 * 109.47187 * 329.99780 * 17 15 13 21 21 C 1.53113 * 109.16322 * 302.35146 * 7 6 5 22 22 C 1.46843 * 110.99837 * 120.00436 * 4 3 2 23 23 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 27 27 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 28 28 H 1.09003 * 109.46040 * 294.17671 * 5 4 3 29 29 H 1.09000 * 109.46335 * 54.14775 * 5 4 3 30 30 H 1.09001 * 109.50332 * 299.24090 * 6 5 4 31 31 H 1.08992 * 109.54049 * 179.14142 * 6 5 4 32 32 H 1.08998 * 109.57185 * 62.28447 * 7 6 5 33 33 H 1.09001 * 109.46974 * 54.68370 * 8 7 6 34 34 H 1.08996 * 109.47797 * 174.68308 * 8 7 6 35 35 H 0.97002 * 120.00342 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46874 * 299.99934 * 12 11 9 37 37 H 1.09000 * 109.47171 * 60.00118 * 12 11 9 38 38 H 0.97000 * 119.99709 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.50330 * 297.71146 * 21 7 6 40 40 H 1.08999 * 109.53597 * 177.61426 * 21 7 6 41 41 H 1.09003 * 109.45863 * 305.85439 * 22 4 3 42 42 H 1.08999 * 109.46347 * 65.83252 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4648 1.4628 -0.0006 5 6 3.9429 2.0987 1.2337 6 6 5.4727 2.0712 1.2638 7 6 6.0158 2.8153 0.0407 8 6 7.5438 2.7392 0.0328 9 6 8.0903 3.4879 1.2210 10 8 7.3323 4.0295 1.9974 11 7 9.4215 3.5557 1.4208 12 6 9.9527 4.2841 2.5756 13 6 11.4578 4.2090 2.5678 14 1 11.9677 3.6720 1.7815 15 6 12.1840 4.8258 3.5644 16 7 13.4974 4.7598 3.5579 17 14 11.3021 5.7551 4.9239 18 1 11.0134 4.8301 6.0491 19 1 12.1639 6.8650 5.4042 20 1 10.0283 6.3090 4.3991 21 6 5.4644 2.1631 -1.2301 22 6 3.9348 2.1879 -1.1879 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.5974 3.1319 1.2672 29 1 3.5530 1.5573 2.0957 30 1 5.8186 1.0377 1.2442 31 1 5.8282 2.5567 2.1726 32 1 5.7033 3.8588 0.0796 33 1 7.8559 1.6962 0.0858 34 1 7.9252 3.1862 -0.8852 35 1 10.0278 3.1222 0.8000 36 1 9.6410 5.3272 2.5219 37 1 9.5710 3.8376 3.4937 38 1 14.0083 5.1941 4.2589 39 1 5.8101 1.1310 -1.2890 40 1 5.8133 2.7141 -2.1035 41 1 3.5389 1.7113 -2.0847 42 1 3.5895 3.2208 -1.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:08 Heat of formation + Delta-G solvation = -80.260368 kcal Electronic energy + Delta-G solvation = -20744.853615 eV Core-core repulsion = 17531.932196 eV Total energy + Delta-G solvation = -3212.921420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92083 -39.42713 -37.38686 -36.10640 -34.40152 -33.99928 -31.87343 -31.50542 -30.22381 -28.09602 -24.53116 -24.10103 -23.50290 -22.93746 -21.32765 -20.64655 -19.08676 -18.36881 -17.61361 -17.02046 -16.68917 -16.48051 -16.05303 -16.00963 -15.47533 -15.21278 -14.85673 -14.66618 -14.60327 -14.37721 -14.05834 -13.75837 -13.27138 -13.18531 -13.01434 -12.87938 -12.70179 -12.60231 -12.37059 -12.19875 -11.94368 -11.71822 -11.65307 -11.56534 -11.33737 -10.92102 -10.80707 -10.57085 -9.86193 -9.77285 -8.40365 -6.46916 1.31689 1.34156 1.46432 1.50482 1.81769 2.27305 2.54905 2.95094 3.59672 3.73673 3.82475 3.94881 4.16012 4.22372 4.22881 4.32463 4.40412 4.42622 4.52564 4.60844 4.64899 4.73222 4.77943 4.81931 4.86164 4.95422 4.99478 5.04715 5.05244 5.07164 5.19902 5.25787 5.26748 5.28698 5.46932 5.59406 5.77719 6.07727 6.09840 6.54827 6.90976 7.16460 7.49099 8.74333 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.003042 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.704811 B = 9203.128227 C = 9592.312896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 O -0.289 6.289 4 N -0.364 5.364 5 C 0.049 3.951 6 C -0.108 4.108 7 C -0.074 4.074 8 C -0.123 4.123 9 C 0.495 3.505 10 O -0.594 6.594 11 N -0.709 5.709 12 C 0.232 3.768 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.025 3.975 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.262 1.262 21 C -0.097 4.097 22 C 0.041 3.959 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.409 0.591 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.272 0.728 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 -9.988 -11.459 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 O -0.294 6.294 4 N -0.133 5.133 5 C -0.079 4.079 6 C -0.146 4.146 7 C -0.093 4.093 8 C -0.162 4.162 9 C 0.284 3.716 10 O -0.476 6.476 11 N -0.359 5.359 12 C 0.107 3.893 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.135 4.135 22 C -0.086 4.086 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.244 0.756 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.808 -9.855 -10.833 26.269 hybrid contribution 0.183 1.199 0.840 1.475 sum -21.625 -8.656 -9.994 25.346 Atomic orbital electron populations 1.21785 0.92287 1.03692 1.02553 1.22458 0.94929 0.83297 1.00749 1.90660 1.13421 1.28316 1.97008 1.67555 0.91397 1.50705 1.03612 1.22313 0.96040 0.97229 0.92309 1.21701 0.92094 1.01297 0.99474 1.20966 0.93178 0.99666 0.95458 1.21738 0.95972 1.02495 0.96037 1.21579 0.81743 0.80458 0.87827 1.90602 1.58297 1.49267 1.49424 1.46107 1.07121 1.54234 1.28457 1.19049 0.92838 0.91631 0.85733 1.21324 0.90095 1.35109 1.11831 0.92184 1.25614 0.95384 0.96505 1.00036 1.69980 1.06681 1.44997 1.35338 0.85855 0.79087 0.79177 0.79738 1.19040 1.19877 1.18610 1.21652 0.91662 1.02923 0.97276 1.22475 0.96500 0.96780 0.92890 0.92603 0.92084 0.88663 0.93419 0.92565 0.95372 0.90382 0.90380 0.91316 0.92420 0.86384 0.86109 0.75555 0.97279 0.97293 0.91884 0.89292 0.88075 0.88694 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.06 1.10 7.16 71.98 0.52 1.62 16 3 O -0.29 -6.91 10.60 -50.17 -0.53 -7.44 16 4 N -0.36 -8.27 5.00 -514.01 -2.57 -10.84 16 5 C 0.05 1.22 5.99 86.33 0.52 1.74 16 6 C -0.11 -2.68 5.09 30.65 0.16 -2.53 16 7 C -0.07 -1.62 1.90 -10.72 -0.02 -1.64 16 8 C -0.12 -2.67 5.18 29.85 0.15 -2.52 16 9 C 0.50 17.19 7.56 87.66 0.66 17.85 16 10 O -0.59 -25.38 13.99 -3.01 -0.04 -25.42 16 11 N -0.71 -27.31 5.55 -466.78 -2.59 -29.90 16 12 C 0.23 11.27 4.50 85.63 0.38 11.66 16 13 C -0.55 -29.99 9.83 25.60 0.25 -29.74 16 14 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 15 C 0.02 1.41 5.47 84.66 0.46 1.87 16 16 N -0.93 -55.56 13.96 21.45 0.30 -55.26 16 17 Si 0.94 44.25 27.47 68.60 1.88 46.13 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 21 C -0.10 -1.51 5.38 30.64 0.16 -1.35 16 22 C 0.04 0.78 5.99 86.33 0.52 1.30 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.17 6.04 -2.39 -0.01 2.15 16 32 H 0.06 1.53 7.95 -2.39 -0.02 1.51 16 33 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 13.57 8.32 -92.71 -0.77 12.80 16 36 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 37 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -69.45 338.86 1.12 -68.33 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.16 Total: 17.26 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.51 Total: -2.86 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -4.86 Total: -95.99 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.57 Total: -32.86 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -69.45 1.12 -68.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.932 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds