Wall clock time and date at job start Mon Mar 30 2020 01:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42908 * 109.47040 * 2 1 4 4 C 1.42893 * 113.99673 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.78564 * 31.78938 * 4 3 2 6 6 C 1.55405 * 110.84950 * 155.08534 * 4 3 2 7 7 C 1.54914 * 101.66697 * 153.69922 * 6 4 3 8 8 N 1.47426 * 104.82992 * 323.07703 * 7 6 4 9 9 C 1.34775 * 125.64489 * 204.09098 * 8 7 6 10 10 O 1.21592 * 119.99928 * 180.02562 * 9 8 7 11 11 N 1.34783 * 120.00306 * 0.04495 * 9 8 7 12 12 C 1.46496 * 120.00035 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46892 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46890 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46910 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00418 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99853 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00055 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47002 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46830 * 120.00142 * 19 17 15 22 22 H 1.48501 * 109.46954 * 240.00020 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 8 7 6 24 24 H 1.08998 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47280 * 300.00373 * 1 2 3 26 26 H 1.09003 * 109.46578 * 59.99938 * 1 2 3 27 27 H 1.08994 * 109.47144 * 240.00136 * 2 1 3 28 28 H 1.08997 * 109.47247 * 119.99526 * 2 1 3 29 29 H 1.09000 * 110.89538 * 35.62727 * 6 4 3 30 30 H 1.09000 * 111.06973 * 271.84570 * 6 4 3 31 31 H 1.08999 * 110.37121 * 204.23438 * 7 6 4 32 32 H 1.09003 * 110.36718 * 81.91343 * 7 6 4 33 33 H 0.96998 * 119.99643 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47096 * 299.99498 * 12 11 9 35 35 H 1.08996 * 109.47187 * 59.99400 * 12 11 9 36 36 H 1.08991 * 109.47340 * 299.99381 * 13 12 11 37 37 H 1.09006 * 109.47425 * 59.99993 * 13 12 11 38 38 H 1.09002 * 109.47444 * 300.00120 * 14 13 12 39 39 H 1.08996 * 109.46841 * 60.00024 * 14 13 12 40 40 H 0.96998 * 119.99579 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.88241 * 118.36067 * 23 8 7 42 42 H 1.09000 * 109.88049 * 239.37196 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8850 0.6271 -0.5359 6 6 3.8785 2.8167 -0.6112 7 6 5.2478 3.0352 0.0796 8 7 5.0653 2.5226 1.4497 9 6 5.7827 2.8929 2.5289 10 8 5.5442 2.4016 3.6153 11 7 6.7642 3.8082 2.4041 12 6 7.5443 4.2102 3.5771 13 6 8.5857 5.2522 3.1642 14 6 9.4001 5.6726 4.3894 15 6 10.4255 6.6994 3.9828 16 1 10.4897 7.0204 2.9536 17 6 11.2817 7.2290 4.9248 18 7 11.2040 6.8378 6.1780 19 14 12.5533 8.5013 4.4206 20 1 12.4368 8.7674 2.9644 21 1 12.3205 9.7594 5.1745 22 1 13.9137 7.9879 4.7223 23 6 3.9717 1.5400 1.4437 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.1785 3.6105 -0.3508 30 1 3.9943 2.7398 -1.6923 31 1 5.4967 4.0962 0.1014 32 1 6.0266 2.4726 -0.4353 33 1 6.9545 4.2001 1.5375 34 1 6.8788 4.6384 4.3267 35 1 8.0485 3.3386 3.9943 36 1 9.2512 4.8237 2.4149 37 1 8.0819 6.1240 2.7467 38 1 8.7344 6.1013 5.1386 39 1 9.9039 4.8010 4.8072 40 1 11.8061 7.2107 6.8407 41 1 4.3478 0.5649 1.7532 42 1 3.1795 1.8630 2.1192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916742747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:28 Heat of formation + Delta-G solvation = -89.325024 kcal Electronic energy + Delta-G solvation = -20277.521363 eV Core-core repulsion = 17064.206870 eV Total energy + Delta-G solvation = -3213.314493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33717 -38.76399 -36.70677 -35.31511 -33.31167 -32.16365 -31.15979 -30.39318 -28.72164 -26.53238 -24.03802 -23.16000 -22.61453 -21.45333 -20.59686 -19.69767 -18.10167 -17.54921 -16.48529 -16.10331 -15.78298 -15.64883 -14.93156 -14.81993 -14.47045 -14.05766 -13.89733 -13.50449 -13.19700 -13.10084 -12.71395 -12.48971 -12.28831 -12.12382 -11.79105 -11.73159 -11.66257 -11.55784 -11.02630 -10.91255 -10.70707 -10.55860 -10.11260 -9.96800 -9.85048 -9.43551 -9.10105 -8.95241 -8.47716 -8.36510 -6.00926 -4.03909 2.54509 3.24797 3.30466 3.37474 3.37947 3.41421 4.00307 4.16704 4.30656 4.45421 4.58979 4.66580 4.78212 4.85017 4.96737 5.01752 5.24141 5.28341 5.34845 5.41876 5.48099 5.51930 5.61559 5.66975 5.72273 5.76030 5.83228 6.10705 6.20220 6.54562 6.63853 6.80284 6.85477 7.03310 7.10121 7.65374 7.78068 7.98229 8.08441 8.39082 8.74026 9.03036 9.60166 11.10406 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.055757 B = 0.002531 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.060070 B =11059.695920 C =11433.569653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.373 6.373 4 C 0.078 3.922 5 H 0.080 0.920 6 C -0.126 4.126 7 C 0.100 3.900 8 N -0.639 5.639 9 C 0.719 3.281 10 O -0.589 6.589 11 N -0.739 5.739 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.106 3.894 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 -12.574 -17.160 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.291 6.291 4 C 0.019 3.981 5 H 0.098 0.902 6 C -0.164 4.164 7 C -0.024 4.024 8 N -0.380 5.380 9 C 0.421 3.579 10 O -0.467 6.467 11 N -0.393 5.393 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.018 4.018 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.308 -12.725 -16.069 27.483 hybrid contribution 1.034 0.650 -0.582 1.353 sum -17.274 -12.075 -16.650 26.860 Atomic orbital electron populations 1.21749 0.93567 1.02352 1.03246 1.22573 0.95786 0.83595 1.00327 1.87961 1.19686 1.26689 1.94773 1.23126 0.81674 0.98661 0.94637 0.90241 1.22885 0.96180 0.96984 1.00320 1.22278 0.97334 1.00170 0.82584 1.47395 1.37489 1.45680 1.07423 1.15496 0.79487 0.80201 0.82735 1.90927 1.71396 1.59348 1.24987 1.45392 1.36496 1.44170 1.13255 1.21535 0.92831 0.98422 0.86060 1.21890 0.96129 0.96130 1.01643 1.19036 0.94240 0.96525 0.91626 1.21241 1.16792 1.23086 0.94828 0.92592 1.25043 0.97613 0.96928 0.94986 1.69981 1.38349 1.43446 1.01468 0.86521 0.81380 0.81373 0.78612 1.19775 1.21012 1.21023 1.22178 0.89700 0.92439 0.97491 0.91025 0.91690 0.91848 0.93179 0.93034 0.89316 0.89208 0.90164 0.91120 0.77296 0.91894 0.91906 0.92766 0.92764 0.96209 0.96213 0.92990 0.91570 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.36 6.53 37.16 0.24 0.60 16 3 O -0.37 -3.37 10.08 -35.23 -0.36 -3.72 16 4 C 0.08 0.63 3.41 -24.76 -0.08 0.55 16 5 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 6 C -0.13 -0.90 6.82 -24.44 -0.17 -1.06 16 7 C 0.10 0.84 6.58 -2.53 -0.02 0.82 16 8 N -0.64 -8.07 3.33 -176.23 -0.59 -8.65 16 9 C 0.72 12.05 8.49 -86.91 -0.74 11.31 16 10 O -0.59 -12.40 16.67 5.28 0.09 -12.31 16 11 N -0.74 -11.48 5.52 -65.23 -0.36 -11.84 16 12 C 0.13 2.48 5.67 -4.05 -0.02 2.46 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.11 1.19 6.63 -3.07 -0.02 1.17 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.27 8.11 -51.93 -0.42 -0.15 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.62 7.30 -51.93 -0.38 0.24 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.39 4.96 6.95 -40.82 -0.28 4.67 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -34.15 347.30 -8.75 -42.90 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.37 Total: -1.76 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.11 Total: -0.15 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.21 Total: -46.73 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.27 Total: -16.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.15 -8.75 -42.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916742747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.427 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds