Wall clock time and date at job start Mon Mar 30 2020 01:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21288 * 120.00006 * 2 1 4 4 N 1.34780 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99810 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47262 * 174.96185 * 5 4 2 7 7 H 1.08992 * 109.46407 * 173.94806 * 6 5 4 8 8 C 1.53036 * 109.46191 * 293.92819 * 6 5 4 9 9 C 1.53118 * 109.28074 * 179.19173 * 8 6 5 10 10 C 1.53122 * 109.16028 * 302.34902 * 9 8 6 11 11 C 1.53040 * 109.28005 * 57.65013 * 10 9 8 12 12 N 1.46846 * 109.52275 * 300.82017 * 11 10 9 13 13 C 1.46895 * 111.00007 * 185.83997 * 12 11 10 14 14 C 1.53007 * 109.47281 * 311.02134 * 13 12 11 15 15 H 1.09001 * 109.46954 * 53.77515 * 14 13 12 16 16 O 1.42907 * 109.46995 * 293.78424 * 14 13 12 17 17 C 1.50694 * 109.47395 * 173.78362 * 14 13 12 18 18 H 1.08004 * 120.00051 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99798 * 180.02562 * 17 14 13 20 20 N 1.31507 * 120.00200 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99722 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47104 * 59.99608 * 21 19 17 23 23 H 1.48503 * 109.47163 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47284 * 299.99762 * 21 19 17 25 25 H 1.09001 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47164 * 300.00183 * 1 2 3 27 27 H 1.08998 * 109.47106 * 60.00083 * 1 2 3 28 28 H 0.96995 * 119.99743 * 0.02562 * 4 2 1 29 29 H 1.08998 * 109.47053 * 294.96566 * 5 4 2 30 30 H 1.09005 * 109.47176 * 54.96289 * 5 4 2 31 31 H 1.08998 * 109.50646 * 299.13476 * 8 6 5 32 32 H 1.09012 * 109.50355 * 59.25340 * 8 6 5 33 33 H 1.08998 * 109.52280 * 62.24616 * 9 8 6 34 34 H 1.08996 * 109.52913 * 182.38054 * 9 8 6 35 35 H 1.08995 * 109.50392 * 177.59194 * 10 9 8 36 36 H 1.09000 * 109.50323 * 297.67236 * 10 9 8 37 37 H 1.08997 * 109.46312 * 60.83687 * 11 10 9 38 38 H 1.09000 * 109.45988 * 180.80758 * 11 10 9 39 39 H 1.08993 * 109.47501 * 71.01864 * 13 12 11 40 40 H 1.09004 * 109.47118 * 191.02512 * 13 12 11 41 41 H 0.96702 * 113.99788 * 299.99630 * 16 14 13 42 42 H 0.96999 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1560 -2.6040 0.1283 7 1 5.2405 -2.6153 0.0209 8 6 3.7737 -3.1611 1.5014 9 6 4.2683 -4.6056 1.6166 10 6 3.6626 -5.4362 0.4818 11 6 4.0481 -4.8132 -0.8619 12 7 3.5518 -3.4325 -0.9230 13 6 3.7823 -2.8485 -2.2510 14 6 5.2338 -3.0910 -2.6699 15 1 5.4594 -4.1550 -2.5992 16 8 6.1071 -2.3606 -1.8061 17 6 5.4306 -2.6288 -4.0906 18 1 4.6030 -2.2050 -4.6402 19 6 6.6668 -2.7481 -4.6894 20 7 7.6744 -3.2646 -4.0204 21 14 6.9106 -2.1759 -6.4508 22 1 6.6034 -0.7262 -6.5473 23 1 8.3194 -2.4111 -6.8573 24 1 6.0027 -2.9350 -7.3480 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6959 -2.0072 0.0005 29 1 4.0096 -0.7336 -0.9305 30 1 4.0090 -0.5770 0.8426 31 1 4.2350 -2.5553 2.2813 32 1 2.6897 -3.1375 1.6148 33 1 5.3556 -4.6254 1.5421 34 1 3.9614 -5.0204 2.5767 35 1 4.0446 -6.4558 0.5331 36 1 2.5771 -5.4490 0.5795 37 1 5.1333 -4.8139 -0.9645 38 1 3.6065 -5.3941 -1.6716 39 1 3.1129 -3.3145 -2.9740 40 1 3.5888 -1.7764 -2.2151 41 1 5.9627 -1.4045 -1.8178 42 1 8.5442 -3.3481 -4.4415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931338534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:52 Heat of formation + Delta-G solvation = -94.127190 kcal Electronic energy + Delta-G solvation = -22454.644853 eV Core-core repulsion = 19241.122122 eV Total energy + Delta-G solvation = -3213.522730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86243 -38.67889 -35.68537 -34.50654 -32.70502 -32.16016 -31.33425 -29.39904 -28.15191 -25.88809 -24.91135 -23.02560 -21.26520 -20.70785 -20.40976 -18.75521 -17.10132 -16.68704 -15.94415 -15.50292 -14.98078 -14.72411 -14.65327 -14.40137 -13.96021 -13.82647 -13.68952 -13.21208 -13.08765 -12.57218 -12.42675 -12.30677 -12.20052 -11.71860 -11.58618 -11.24868 -11.01673 -10.91277 -10.80656 -10.59235 -10.44370 -10.12967 -9.97241 -9.89848 -9.67303 -9.46612 -8.75615 -8.60746 -8.55739 -7.24652 -6.03641 -4.22553 2.84964 3.26950 3.32333 3.34544 3.53133 4.34821 4.47071 4.96912 5.03043 5.04409 5.16918 5.22029 5.22968 5.40203 5.45599 5.52056 5.75592 5.76950 5.82973 5.92090 5.95337 6.06650 6.13369 6.16631 6.23172 6.27921 6.32576 6.40716 6.48707 6.51176 6.66136 6.79668 6.89277 7.48167 7.58131 7.73799 7.81566 7.84001 8.16487 8.46906 8.79368 9.27085 9.53409 10.99261 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.006433 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.283023 B = 4351.534010 C = 5512.697021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.503 3.497 3 O -0.559 6.559 4 N -0.711 5.711 5 C 0.125 3.875 6 C 0.059 3.941 7 H 0.092 0.908 8 C -0.108 4.108 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.019 3.981 14 C 0.198 3.802 15 H 0.062 0.938 16 O -0.563 6.563 17 C -0.573 4.573 18 H 0.054 0.946 19 C 0.081 3.919 20 N -0.860 5.860 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.407 0.593 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.343 0.657 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -1.530 10.412 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.289 3.711 3 O -0.438 6.438 4 N -0.363 5.363 5 C 0.001 3.999 6 C -0.050 4.050 7 H 0.110 0.890 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.152 4.152 11 C -0.076 4.076 12 N -0.256 5.256 13 C -0.108 4.108 14 C 0.140 3.860 15 H 0.079 0.921 16 O -0.366 6.366 17 C -0.611 4.611 18 H 0.073 0.927 19 C -0.126 4.126 20 N -0.496 5.496 21 Si 0.715 3.285 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.243 0.757 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.187 0.813 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.124 -1.483 10.626 15.455 hybrid contribution 0.613 0.387 -1.499 1.665 sum -10.512 -1.096 9.126 13.964 Atomic orbital electron populations 1.21819 0.92408 1.03941 1.04775 1.20763 0.90442 0.83794 0.76062 1.90711 1.70810 1.31641 1.50667 1.46059 1.07694 1.08635 1.73947 1.21490 0.79734 0.96577 1.02062 1.22125 1.00470 0.90917 0.91490 0.89006 1.21607 1.00899 0.95923 0.96204 1.21549 1.00681 0.95472 0.98004 1.21577 1.00663 0.98148 0.94780 1.22060 0.99441 0.89529 0.96608 1.62296 1.57455 1.01808 1.04072 1.23108 0.99951 0.99424 0.88313 1.20029 0.83741 0.93623 0.88620 0.92091 1.86527 1.63409 1.20168 1.66525 1.21594 0.96225 1.44376 0.98925 0.92743 1.25025 0.96081 0.94048 0.97402 1.70049 1.01098 1.42124 1.36293 0.86757 0.77144 0.79433 0.85173 1.20134 1.21222 1.20176 0.90723 0.89263 0.89075 0.75663 0.91108 0.91578 0.92154 0.92026 0.92050 0.92580 0.92218 0.91911 0.93090 0.91325 0.91330 0.91309 0.81260 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.39 36.01 0.37 -1.21 16 2 C 0.50 7.08 7.94 -10.98 -0.09 6.99 16 3 O -0.56 -10.44 17.10 5.55 0.09 -10.34 16 4 N -0.71 -9.39 5.07 -60.29 -0.31 -9.70 16 5 C 0.13 1.89 4.57 -4.04 -0.02 1.87 16 6 C 0.06 0.88 1.61 -67.72 -0.11 0.77 16 7 H 0.09 1.65 5.77 -51.93 -0.30 1.35 16 8 C -0.11 -1.35 5.26 -26.65 -0.14 -1.49 16 9 C -0.12 -1.47 6.00 -26.61 -0.16 -1.63 16 10 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 11 C 0.05 0.83 4.51 -3.83 -0.02 0.81 16 12 N -0.53 -8.40 4.02 -226.69 -0.91 -9.31 16 13 C 0.02 0.37 4.99 -3.82 -0.02 0.35 16 14 C 0.20 4.68 2.33 -27.88 -0.06 4.61 16 15 H 0.06 1.60 6.05 -51.93 -0.31 1.28 16 16 O -0.56 -13.41 9.92 -35.23 -0.35 -13.75 16 17 C -0.57 -15.32 8.76 -34.44 -0.30 -15.62 16 18 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 19 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 20 N -0.86 -24.99 12.84 55.43 0.71 -24.28 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.41 4.77 7.28 -40.82 -0.30 4.47 16 29 H 0.07 1.23 5.79 -51.93 -0.30 0.93 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.72 7.35 -51.92 -0.38 0.34 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.98 6.44 -51.93 -0.33 0.64 16 38 H 0.07 1.11 8.12 -51.93 -0.42 0.68 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.33 5.55 -51.93 -0.29 1.04 16 41 H 0.34 7.61 8.46 45.56 0.39 7.99 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -30.84 325.73 -7.68 -38.53 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.01 Total: 11.86 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.80 Total: -4.03 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.50 Total: -43.28 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.25 Total: -24.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.84 -7.68 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931338534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.599 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds