Wall clock time and date at job start Mon Mar 30 2020 01:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21288 * 120.00006 * 2 1 4 4 N 1.34780 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99810 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47262 * 174.96185 * 5 4 2 7 7 H 1.08992 * 109.46407 * 173.94806 * 6 5 4 8 8 C 1.53036 * 109.46191 * 293.92819 * 6 5 4 9 9 C 1.53118 * 109.28074 * 179.19173 * 8 6 5 10 10 C 1.53122 * 109.16028 * 302.34902 * 9 8 6 11 11 C 1.53040 * 109.28005 * 57.65013 * 10 9 8 12 12 N 1.46846 * 109.52275 * 300.82017 * 11 10 9 13 13 C 1.46895 * 111.00007 * 185.83997 * 12 11 10 14 14 C 1.53007 * 109.47281 * 311.02134 * 13 12 11 15 15 H 1.09001 * 109.46954 * 53.77515 * 14 13 12 16 16 O 1.42907 * 109.46995 * 293.78424 * 14 13 12 17 17 C 1.50694 * 109.47395 * 173.78362 * 14 13 12 18 18 H 1.08004 * 120.00051 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99798 * 180.02562 * 17 14 13 20 20 N 1.31507 * 120.00200 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99722 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.47104 * 59.99608 * 21 19 17 23 23 H 1.48503 * 109.47163 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47284 * 299.99762 * 21 19 17 25 25 H 1.09001 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47164 * 300.00183 * 1 2 3 27 27 H 1.08998 * 109.47106 * 60.00083 * 1 2 3 28 28 H 0.96995 * 119.99743 * 0.02562 * 4 2 1 29 29 H 1.08998 * 109.47053 * 294.96566 * 5 4 2 30 30 H 1.09005 * 109.47176 * 54.96289 * 5 4 2 31 31 H 1.08998 * 109.50646 * 299.13476 * 8 6 5 32 32 H 1.09012 * 109.50355 * 59.25340 * 8 6 5 33 33 H 1.08998 * 109.52280 * 62.24616 * 9 8 6 34 34 H 1.08996 * 109.52913 * 182.38054 * 9 8 6 35 35 H 1.08995 * 109.50392 * 177.59194 * 10 9 8 36 36 H 1.09000 * 109.50323 * 297.67236 * 10 9 8 37 37 H 1.08997 * 109.46312 * 60.83687 * 11 10 9 38 38 H 1.09000 * 109.45988 * 180.80758 * 11 10 9 39 39 H 1.08993 * 109.47501 * 71.01864 * 13 12 11 40 40 H 1.09004 * 109.47118 * 191.02512 * 13 12 11 41 41 H 0.96702 * 113.99788 * 299.99630 * 16 14 13 42 42 H 0.96999 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1560 -2.6040 0.1283 7 1 5.2405 -2.6153 0.0209 8 6 3.7737 -3.1611 1.5014 9 6 4.2683 -4.6056 1.6166 10 6 3.6626 -5.4362 0.4818 11 6 4.0481 -4.8132 -0.8619 12 7 3.5518 -3.4325 -0.9230 13 6 3.7823 -2.8485 -2.2510 14 6 5.2338 -3.0910 -2.6699 15 1 5.4594 -4.1550 -2.5992 16 8 6.1071 -2.3606 -1.8061 17 6 5.4306 -2.6288 -4.0906 18 1 4.6030 -2.2050 -4.6402 19 6 6.6668 -2.7481 -4.6894 20 7 7.6744 -3.2646 -4.0204 21 14 6.9106 -2.1759 -6.4508 22 1 6.6034 -0.7262 -6.5473 23 1 8.3194 -2.4111 -6.8573 24 1 6.0027 -2.9350 -7.3480 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6959 -2.0072 0.0005 29 1 4.0096 -0.7336 -0.9305 30 1 4.0090 -0.5770 0.8426 31 1 4.2350 -2.5553 2.2813 32 1 2.6897 -3.1375 1.6148 33 1 5.3556 -4.6254 1.5421 34 1 3.9614 -5.0204 2.5767 35 1 4.0446 -6.4558 0.5331 36 1 2.5771 -5.4490 0.5795 37 1 5.1333 -4.8139 -0.9645 38 1 3.6065 -5.3941 -1.6716 39 1 3.1129 -3.3145 -2.9740 40 1 3.5888 -1.7764 -2.2151 41 1 5.9627 -1.4045 -1.8178 42 1 8.5442 -3.3481 -4.4415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931338534.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:52 Heat of formation + Delta-G solvation = -118.186148 kcal Electronic energy + Delta-G solvation = -22455.688128 eV Core-core repulsion = 19241.122122 eV Total energy + Delta-G solvation = -3214.566005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14132 -39.94766 -37.41849 -35.71538 -34.34584 -34.03776 -32.48359 -30.32436 -29.91578 -27.25101 -26.44965 -24.57319 -22.63033 -22.05632 -21.60673 -20.05141 -19.10508 -17.79520 -17.20604 -16.77033 -16.69141 -16.47687 -16.03497 -15.89859 -15.31503 -15.22131 -15.06965 -14.57575 -14.34373 -13.93451 -13.73277 -13.41867 -13.23662 -13.01615 -12.88747 -12.79555 -12.78789 -12.73779 -12.25748 -12.20581 -11.83408 -11.55992 -11.38224 -11.16443 -11.05896 -10.86889 -10.71015 -10.51345 -9.93787 -8.86360 -8.13568 -6.41152 1.36783 1.37790 1.45619 1.75238 2.35565 2.45291 3.07801 3.12236 3.80871 3.89284 4.06303 4.09616 4.14046 4.24958 4.39746 4.49899 4.57854 4.59881 4.65834 4.68810 4.74121 4.82360 4.87171 4.95137 5.07228 5.12440 5.13116 5.19075 5.19465 5.31158 5.34723 5.53634 5.56899 5.62247 5.71029 5.97074 6.23904 6.31844 6.70950 6.75296 7.28411 7.39671 7.46514 8.86822 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.006433 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.283023 B = 4351.534010 C = 5512.697021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.496 3.504 3 O -0.612 6.612 4 N -0.700 5.700 5 C 0.133 3.867 6 C 0.064 3.936 7 H 0.059 0.941 8 C -0.102 4.102 9 C -0.118 4.118 10 C -0.105 4.105 11 C 0.052 3.948 12 N -0.511 5.511 13 C 0.038 3.962 14 C 0.201 3.799 15 H 0.031 0.969 16 O -0.571 6.571 17 C -0.587 4.587 18 H 0.055 0.945 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.418 0.582 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.348 0.652 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -1.887 11.187 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.285 3.715 3 O -0.494 6.494 4 N -0.353 5.353 5 C 0.008 3.992 6 C -0.044 4.044 7 H 0.077 0.923 8 C -0.140 4.140 9 C -0.156 4.156 10 C -0.143 4.143 11 C -0.076 4.076 12 N -0.234 5.234 13 C -0.090 4.090 14 C 0.143 3.857 15 H 0.049 0.951 16 O -0.375 6.375 17 C -0.626 4.626 18 H 0.073 0.927 19 C -0.174 4.174 20 N -0.535 5.535 21 Si 0.778 3.222 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.192 1.192 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.256 0.744 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.193 0.807 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.538 -1.871 11.407 17.802 hybrid contribution 1.370 0.484 -1.715 2.248 sum -12.168 -1.388 9.692 15.618 Atomic orbital electron populations 1.21836 0.88151 1.06192 1.05754 1.21680 0.92435 0.82833 0.74503 1.90690 1.72291 1.33424 1.53032 1.45985 1.06703 1.09244 1.73339 1.21240 0.81184 0.96198 1.00557 1.22042 0.98466 0.91034 0.92891 0.92340 1.21584 1.02158 0.96083 0.94139 1.21557 0.99496 0.95298 0.99211 1.21542 1.01933 0.98400 0.92409 1.22080 0.96869 0.89640 0.99034 1.62368 1.56634 1.01832 1.02593 1.22767 0.96572 0.99566 0.90112 1.19910 0.86330 0.91842 0.87621 0.95121 1.86503 1.64019 1.20573 1.66382 1.22045 0.96262 1.43800 1.00477 0.92684 1.25830 0.95910 0.94191 1.01447 1.70184 1.01491 1.43716 1.38105 0.85720 0.77104 0.79036 0.80367 1.19674 1.21047 1.19233 0.87860 0.87718 0.88506 0.74390 0.93970 0.91667 0.91230 0.90048 0.94011 0.89680 0.91097 0.89835 0.97146 0.91658 0.91428 0.91379 0.80706 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.39 71.24 0.74 -1.73 16 2 C 0.50 13.21 7.94 87.66 0.70 13.90 16 3 O -0.61 -22.74 17.10 -3.05 -0.05 -22.80 16 4 N -0.70 -17.34 5.07 -463.04 -2.35 -19.69 16 5 C 0.13 4.00 4.57 86.38 0.39 4.39 16 6 C 0.06 1.91 1.61 44.94 0.07 1.99 16 7 H 0.06 2.19 5.77 -2.39 -0.01 2.17 16 8 C -0.10 -2.31 5.26 30.65 0.16 -2.15 16 9 C -0.12 -2.63 6.00 30.67 0.18 -2.45 16 10 C -0.11 -2.44 6.09 30.65 0.19 -2.26 16 11 C 0.05 1.66 4.51 86.33 0.39 2.05 16 12 N -0.51 -15.90 4.02 -871.11 -3.50 -19.40 16 13 C 0.04 1.47 4.99 86.31 0.43 1.90 16 14 C 0.20 9.87 2.33 29.85 0.07 9.94 16 15 H 0.03 1.70 6.05 -2.39 -0.01 1.69 16 16 O -0.57 -28.49 9.92 -148.98 -1.48 -29.97 16 17 C -0.59 -32.07 8.76 25.60 0.22 -31.85 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 19 C 0.03 1.61 5.40 84.66 0.46 2.07 16 20 N -0.90 -53.64 12.84 21.45 0.28 -53.36 16 21 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H 0.10 1.01 7.91 -2.39 -0.02 0.99 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.42 8.54 7.28 -92.71 -0.68 7.86 16 29 H 0.04 1.52 5.79 -2.39 -0.01 1.50 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.57 7.35 -2.38 -0.02 1.56 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.01 0.41 6.44 -2.39 -0.02 0.40 16 38 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.07 2.66 5.55 -2.38 -0.01 2.65 16 41 H 0.35 16.25 8.46 -74.06 -0.63 15.63 16 42 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -69.11 325.73 -1.35 -70.46 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -0.28 Total: 33.10 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 4.01 Total: -4.19 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -5.57 Total: -92.45 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.53 Total: -52.77 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.11 -1.35 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931338534.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.730 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds