Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99528 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00487 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46990 * 59.99741 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00255 * 9 7 5 13 13 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 14 14 O 1.21287 * 119.99667 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00755 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47528 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00551 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.45439 * 323.85392 * 17 16 15 19 19 C 1.54482 * 110.51048 * 86.45222 * 17 16 15 20 20 O 1.44423 * 104.80220 * 142.63059 * 19 17 16 21 21 C 1.44426 * 105.27368 * 319.48697 * 20 19 17 22 22 C 1.54483 * 104.80277 * 40.51486 * 21 20 19 23 23 H 1.08998 * 110.50907 * 94.66390 * 22 21 20 24 24 C 1.53000 * 110.50557 * 217.37491 * 22 21 20 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 30 30 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 31 31 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 32 32 H 0.97003 * 119.99687 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46469 * 300.00239 * 15 13 3 34 34 H 1.09002 * 109.46873 * 59.99721 * 15 13 3 35 35 H 1.00906 * 111.00263 * 303.95411 * 16 15 13 36 36 H 1.09000 * 110.37009 * 261.46384 * 19 17 16 37 37 H 1.08996 * 110.36826 * 23.79137 * 19 17 16 38 38 H 1.09003 * 110.36921 * 159.34827 * 21 20 19 39 39 H 1.08998 * 110.37502 * 281.68347 * 21 20 19 40 40 H 1.09003 * 109.46499 * 174.64398 * 24 22 21 41 41 H 1.08995 * 109.47341 * 294.63974 * 24 22 21 42 42 H 1.09001 * 109.47566 * 54.64959 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 2.0804 3.5761 -3.6170 9 14 -0.5616 4.3858 -3.4170 10 1 -0.9550 5.3752 -2.3818 11 1 -0.3136 5.0869 -4.7024 12 1 -1.6536 3.3953 -3.5954 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2056 3.5889 17 6 2.0775 1.5455 4.8802 18 1 1.2071 0.8919 4.8221 19 6 3.3266 0.7462 5.3132 20 8 3.3986 0.9211 6.7450 21 6 3.0577 2.3052 6.9768 22 6 1.8965 2.5947 5.9998 23 1 0.9362 2.4603 6.4976 24 6 2.0142 4.0105 5.4320 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0644 2.7985 -1.1383 31 1 2.5506 1.3452 -2.0283 32 1 2.0724 4.0854 -4.4426 33 1 0.9444 1.0114 2.5302 34 1 2.6229 0.4186 2.5299 35 1 3.2593 2.5438 3.5215 36 1 3.2069 -0.3084 5.0652 37 1 4.2196 1.1500 4.8360 38 1 2.7315 2.4482 8.0070 39 1 3.9094 2.9482 6.7549 40 1 1.2444 4.1636 4.6756 41 1 1.8840 4.7360 6.2349 42 1 2.9978 4.1405 4.9806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932496237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = -77.504038 kcal Electronic energy + Delta-G solvation = -21566.244367 eV Core-core repulsion = 18353.442471 eV Total energy + Delta-G solvation = -3212.801896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04670 -38.94741 -35.64610 -35.06182 -32.90467 -32.55110 -30.00720 -29.19845 -27.39381 -26.20831 -25.34460 -22.91489 -22.75875 -22.30674 -19.90330 -18.49777 -16.93774 -16.54776 -16.48506 -15.99431 -15.60870 -15.31433 -14.90413 -14.41626 -14.12896 -13.67571 -13.41944 -13.21629 -13.20092 -12.80937 -12.37410 -12.29418 -12.13305 -11.97578 -11.74225 -11.43045 -11.17854 -11.12435 -10.90351 -10.84296 -10.72198 -10.71369 -10.49272 -10.04576 -10.01829 -9.58209 -8.93328 -8.41345 -8.34127 -7.65984 -6.02618 -4.06490 3.32479 3.36871 3.37379 3.44208 3.60390 3.88799 4.33694 4.44326 4.50002 4.56010 4.78881 4.93572 5.07153 5.10194 5.26700 5.32198 5.39415 5.44604 5.48018 5.52042 5.54697 5.61634 5.66029 5.77682 5.83726 5.94975 6.10182 6.14285 6.30519 6.46228 6.55046 6.74985 6.87377 7.11122 7.32611 7.44760 7.57095 7.94065 8.25686 8.43066 8.92463 9.11582 9.58232 11.05595 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.004222 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.521264 B = 6630.229368 C = 7039.100363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.039 3.961 16 N -0.655 5.655 17 C 0.059 3.941 18 H 0.093 0.907 19 C 0.015 3.985 20 O -0.376 6.376 21 C 0.044 3.956 22 C -0.117 4.117 23 H 0.083 0.917 24 C -0.126 4.126 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.352 0.648 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -7.764 16.750 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.094 4.094 16 N -0.288 5.288 17 C -0.052 4.052 18 H 0.111 0.889 19 C -0.064 4.064 20 O -0.294 6.294 21 C -0.033 4.033 22 C -0.136 4.136 23 H 0.101 0.899 24 C -0.183 4.183 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.173 0.827 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.294 -6.917 16.686 18.065 hybrid contribution -0.265 -0.107 -0.591 0.656 sum -0.559 -7.025 16.095 17.570 Atomic orbital electron populations 1.22231 0.96328 1.00853 1.03434 1.21382 0.94591 0.83802 1.01527 1.48269 1.64049 1.13169 1.07737 1.19267 0.97516 0.92414 0.77995 1.21404 0.97492 1.31046 1.06127 0.92371 1.24931 0.96424 0.96280 0.96484 1.69923 1.27494 1.41697 1.14434 0.86590 0.83268 0.79931 0.77820 1.20191 1.21231 1.20296 1.20142 0.79073 0.86956 0.84840 1.90678 1.45634 1.17225 1.86929 1.21983 1.02502 0.94237 0.90639 1.60244 1.32552 1.36680 0.99309 1.23010 0.97880 0.94355 0.90000 0.88914 1.24295 0.98003 1.01714 0.82429 1.89106 1.90824 1.27423 1.22060 1.23618 0.96549 0.83123 0.99978 1.22522 0.99228 0.96870 0.94977 0.89858 1.21506 1.03528 0.93068 1.00242 0.90524 0.92865 0.93260 0.90718 0.92237 0.93978 0.95151 0.92730 0.88528 0.93116 0.82688 0.89155 0.92185 0.89220 0.92085 0.90678 0.93684 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 1.72 5.98 -4.04 -0.02 1.69 16 3 N -0.60 -12.28 2.46 -175.06 -0.43 -12.71 16 4 C 0.25 6.37 5.20 -5.20 -0.03 6.34 16 5 C -0.52 -14.58 8.92 -34.44 -0.31 -14.89 16 6 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.50 10.12 7.71 -10.99 -0.08 10.03 16 14 O -0.53 -13.00 15.78 5.55 0.09 -12.91 16 15 C 0.04 0.55 4.56 -4.98 -0.02 0.52 16 16 N -0.65 -8.79 4.27 -106.34 -0.45 -9.24 16 17 C 0.06 0.63 3.40 -66.15 -0.22 0.41 16 18 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 19 C 0.01 0.15 7.24 37.94 0.27 0.42 16 20 O -0.38 -4.39 11.65 -35.23 -0.41 -4.80 16 21 C 0.04 0.42 7.18 37.94 0.27 0.70 16 22 C -0.12 -1.17 3.72 -89.05 -0.33 -1.50 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 C -0.13 -1.39 8.15 37.16 0.30 -1.09 16 25 H 0.08 1.38 7.26 -51.93 -0.38 1.01 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.72 7.22 -51.93 -0.38 0.34 16 28 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 30 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 31 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.28 7.12 -51.93 -0.37 0.91 16 34 H 0.05 0.60 7.38 -51.93 -0.38 0.21 16 35 H 0.35 4.93 7.32 -39.29 -0.29 4.65 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.62 7.61 -51.93 -0.40 0.23 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 40 H 0.07 0.99 7.86 -51.93 -0.41 0.58 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.67 7.42 -51.93 -0.39 0.28 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -32.44 337.05 -7.28 -39.71 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.97 Total: 1.74 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.11 Total: 2.12 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.15 Total: -47.78 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.32 Total: -17.72 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.44 -7.28 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932496237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.792 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds