Wall clock time and date at job start Mon Mar 30 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.50695 * 109.47443 * 90.00099 * 4 3 2 6 6 H 1.08001 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00480 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99528 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00487 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46990 * 59.99741 * 9 7 5 11 11 H 1.48497 * 109.47011 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47086 * 300.00255 * 9 7 5 13 13 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 14 14 O 1.21287 * 119.99667 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00755 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47528 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00551 * 179.97438 * 16 15 13 18 18 H 1.09007 * 110.45439 * 323.85392 * 17 16 15 19 19 C 1.54482 * 110.51048 * 86.45222 * 17 16 15 20 20 O 1.44423 * 104.80220 * 142.63059 * 19 17 16 21 21 C 1.44426 * 105.27368 * 319.48697 * 20 19 17 22 22 C 1.54483 * 104.80277 * 40.51486 * 21 20 19 23 23 H 1.08998 * 110.50907 * 94.66390 * 22 21 20 24 24 C 1.53000 * 110.50557 * 217.37491 * 22 21 20 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 30 30 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 31 31 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 32 32 H 0.97003 * 119.99687 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46469 * 300.00239 * 15 13 3 34 34 H 1.09002 * 109.46873 * 59.99721 * 15 13 3 35 35 H 1.00906 * 111.00263 * 303.95411 * 16 15 13 36 36 H 1.09000 * 110.37009 * 261.46384 * 19 17 16 37 37 H 1.08996 * 110.36826 * 23.79137 * 19 17 16 38 38 H 1.09003 * 110.36921 * 159.34827 * 21 20 19 39 39 H 1.08998 * 110.37502 * 281.68347 * 21 20 19 40 40 H 1.09003 * 109.46499 * 174.64398 * 24 22 21 41 41 H 1.08995 * 109.47341 * 294.63974 * 24 22 21 42 42 H 1.09001 * 109.47566 * 54.64959 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0067 2.7823 -1.7037 6 1 0.1157 2.7248 -1.0961 7 6 0.9952 3.5057 -2.8774 8 7 2.0804 3.5761 -3.6170 9 14 -0.5616 4.3858 -3.4170 10 1 -0.9550 5.3752 -2.3818 11 1 -0.3136 5.0869 -4.7024 12 1 -1.6536 3.3953 -3.5954 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4724 16 7 2.3110 2.2056 3.5889 17 6 2.0775 1.5455 4.8802 18 1 1.2071 0.8919 4.8221 19 6 3.3266 0.7462 5.3132 20 8 3.3986 0.9211 6.7450 21 6 3.0577 2.3052 6.9768 22 6 1.8965 2.5947 5.9998 23 1 0.9362 2.4603 6.4976 24 6 2.0142 4.0105 5.4320 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0644 2.7985 -1.1383 31 1 2.5506 1.3452 -2.0283 32 1 2.0724 4.0854 -4.4426 33 1 0.9444 1.0114 2.5302 34 1 2.6229 0.4186 2.5299 35 1 3.2593 2.5438 3.5215 36 1 3.2069 -0.3084 5.0652 37 1 4.2196 1.1500 4.8360 38 1 2.7315 2.4482 8.0070 39 1 3.9094 2.9482 6.7549 40 1 1.2444 4.1636 4.6756 41 1 1.8840 4.7360 6.2349 42 1 2.9978 4.1405 4.9806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932496237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:37 Heat of formation + Delta-G solvation = -100.545000 kcal Electronic energy + Delta-G solvation = -21567.243498 eV Core-core repulsion = 18353.442471 eV Total energy + Delta-G solvation = -3213.801028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04402 -40.35338 -37.03785 -36.32904 -34.84003 -33.63013 -31.52882 -30.32205 -29.02173 -27.03881 -26.74709 -24.45435 -24.00991 -23.52847 -20.77660 -19.95049 -18.67717 -18.00057 -17.75216 -17.06249 -16.92277 -16.49230 -16.14396 -16.04459 -15.33836 -14.88798 -14.68283 -14.56896 -14.14132 -14.05084 -13.93437 -13.64779 -13.32156 -13.20503 -13.08886 -12.94474 -12.79715 -12.62357 -12.49293 -12.11032 -11.94909 -11.75925 -11.67594 -11.63147 -11.53698 -10.81903 -10.61322 -10.53894 -9.42849 -9.33055 -8.19859 -6.32813 1.36178 1.40414 1.47306 1.87228 2.27668 2.42288 2.90570 3.09828 3.36921 3.62701 3.71426 3.82132 3.99836 4.13051 4.16347 4.29307 4.35273 4.43422 4.54350 4.63086 4.66845 4.72107 4.76294 4.80294 4.86321 4.95603 5.04563 5.08375 5.12272 5.25099 5.28448 5.52837 5.55512 5.62593 5.72648 5.88006 6.00733 6.10412 6.27331 6.74469 6.85891 7.32304 7.54907 8.87115 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.004222 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.521264 B = 6630.229368 C = 7039.100363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.280 1.280 11 H -0.280 1.280 12 H -0.260 1.260 13 C 0.494 3.506 14 O -0.586 6.586 15 C 0.056 3.944 16 N -0.670 5.670 17 C 0.061 3.939 18 H 0.107 0.893 19 C 0.016 3.984 20 O -0.392 6.392 21 C 0.044 3.956 22 C -0.114 4.114 23 H 0.095 0.905 24 C -0.120 4.120 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.106 0.894 30 H -0.005 1.005 31 H 0.021 0.979 32 H 0.266 0.734 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.346 0.654 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -9.535 18.465 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.337 5.337 4 C 0.140 3.860 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.185 1.185 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.076 4.076 16 N -0.303 5.303 17 C -0.049 4.049 18 H 0.125 0.875 19 C -0.063 4.063 20 O -0.310 6.310 21 C -0.032 4.032 22 C -0.133 4.133 23 H 0.114 0.886 24 C -0.178 4.178 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.013 0.987 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.820 -8.746 18.424 20.475 hybrid contribution 0.248 0.433 -1.092 1.201 sum -1.571 -8.312 17.332 19.286 Atomic orbital electron populations 1.22158 0.95591 1.02796 1.01639 1.21746 0.95161 0.81048 1.03862 1.48286 1.64163 1.15033 1.06196 1.18709 0.95345 0.91492 0.80453 1.21670 0.97928 1.31277 1.06198 0.92750 1.25819 0.99681 0.97054 0.96643 1.70046 1.29559 1.42565 1.14895 0.85551 0.79658 0.78818 0.77295 1.20521 1.20479 1.18491 1.21266 0.77448 0.86567 0.86488 1.90646 1.48039 1.20043 1.87907 1.21881 1.04211 0.94341 0.87133 1.60231 1.32337 1.37417 1.00278 1.23068 0.98626 0.94617 0.88612 0.87531 1.24321 0.97488 1.02566 0.81883 1.89094 1.90948 1.28297 1.22693 1.23696 0.96314 0.82381 1.00826 1.22525 1.00085 0.95790 0.94936 0.88631 1.21413 1.01817 0.94558 0.99988 0.94448 0.89001 0.92861 0.90716 0.87553 0.98677 0.96115 0.92566 0.86641 0.89613 0.83403 0.87483 0.92639 0.87466 0.92194 0.93136 0.92207 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 10.24 71.98 0.74 -3.73 16 2 C 0.10 2.98 5.98 86.38 0.52 3.49 16 3 N -0.60 -24.82 2.46 -826.16 -2.03 -26.85 16 4 C 0.26 14.04 5.20 85.63 0.45 14.49 16 5 C -0.53 -30.55 8.92 25.60 0.23 -30.32 16 6 H 0.05 3.09 7.42 -2.91 -0.02 3.07 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 13 C 0.49 19.80 7.71 87.66 0.68 20.48 16 14 O -0.59 -30.00 15.78 -3.05 -0.05 -30.04 16 15 C 0.06 1.44 4.56 85.56 0.39 1.83 16 16 N -0.67 -17.05 4.27 -490.35 -2.09 -19.14 16 17 C 0.06 1.15 3.40 45.93 0.16 1.31 16 18 H 0.11 1.75 7.88 -2.38 -0.02 1.73 16 19 C 0.02 0.29 7.24 72.49 0.52 0.81 16 20 O -0.39 -8.18 11.65 -148.98 -1.74 -9.92 16 21 C 0.04 0.76 7.18 72.49 0.52 1.28 16 22 C -0.11 -2.06 3.72 -9.78 -0.04 -2.09 16 23 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 24 C -0.12 -2.57 8.15 71.98 0.59 -1.98 16 25 H 0.04 1.31 7.26 -2.39 -0.02 1.29 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.40 7.22 -2.39 -0.02 1.38 16 28 H 0.07 2.14 7.89 -2.39 -0.02 2.13 16 29 H 0.11 2.08 6.44 -2.39 -0.02 2.07 16 30 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 31 H 0.02 1.14 7.89 -2.39 -0.02 1.12 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.12 2.60 7.12 -2.38 -0.02 2.58 16 34 H 0.09 1.65 7.38 -2.39 -0.02 1.63 16 35 H 0.35 9.60 7.32 -89.69 -0.66 8.94 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.05 7.61 -2.39 -0.02 1.03 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.03 7.83 -2.39 -0.02 1.01 16 40 H 0.05 1.33 7.86 -2.39 -0.02 1.31 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.04 1.04 7.42 -2.39 -0.02 1.02 16 Total: -1.00 -74.19 337.05 1.95 -72.24 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.34 Total: 16.37 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.21 Total: 6.41 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.84 Total: -102.41 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.78 Total: -39.96 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.19 1.95 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932496237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.305 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds