Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46631 * 2 1 4 4 C 1.42900 * 113.99569 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47431 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99626 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00059 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61609 * 175.00005 * 10 9 8 12 12 C 1.53781 * 87.08070 * 139.98229 * 11 10 9 13 13 N 1.46497 * 113.61305 * 219.93536 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00274 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46726 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47021 * 120.00168 * 18 16 14 21 21 H 1.48502 * 109.47101 * 240.00261 * 18 16 14 22 22 C 1.53786 * 87.17350 * 334.52830 * 12 11 10 23 23 H 1.08998 * 109.47014 * 60.00262 * 1 2 3 24 24 H 1.09002 * 109.46623 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47081 * 299.99793 * 1 2 3 26 26 H 1.08996 * 109.47113 * 240.00518 * 2 1 3 27 27 H 1.08993 * 109.47487 * 119.99683 * 2 1 3 28 28 H 1.09005 * 109.47463 * 60.00300 * 4 3 2 29 29 H 1.08995 * 109.47025 * 299.99420 * 4 3 2 30 30 H 1.09005 * 109.47358 * 59.99470 * 5 4 3 31 31 H 1.09006 * 109.47182 * 300.00156 * 5 4 3 32 32 H 0.96996 * 120.00586 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47114 * 60.00231 * 9 8 6 34 34 H 1.09006 * 109.47306 * 300.00712 * 9 8 6 35 35 H 1.08996 * 112.84723 * 43.80825 * 10 9 8 36 36 H 1.08999 * 113.61181 * 25.43284 * 11 10 9 37 37 H 1.08998 * 113.61680 * 254.52836 * 11 10 9 38 38 H 1.09002 * 113.61445 * 89.11830 * 12 11 10 39 39 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 40 40 H 0.96996 * 120.00281 * 179.97438 * 17 16 14 41 41 H 1.08992 * 113.61675 * 140.02412 * 22 12 11 42 42 H 1.09000 * 113.60973 * 270.92699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 6 5.3275 3.0576 -0.0012 7 8 6.0150 2.0585 -0.0012 8 7 5.9070 4.2744 -0.0022 9 6 7.3674 4.3902 -0.0027 10 6 7.7619 5.8685 -0.0032 11 6 9.2770 6.1019 0.1190 12 6 9.1069 7.2298 -0.9123 13 7 10.1897 7.2927 -1.8971 14 6 10.4523 8.4663 -2.5520 15 1 9.8614 9.3456 -2.3422 16 6 11.4786 8.5260 -3.4848 17 7 12.1990 7.4544 -3.7401 18 14 11.8373 10.1271 -4.3777 19 1 10.8918 11.1745 -3.9147 20 1 13.2300 10.5538 -4.0886 21 1 11.6747 9.9256 -5.8399 22 6 7.8611 6.4804 -1.4134 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.8333 0.9769 -0.8909 29 1 3.8339 0.9767 0.8892 30 1 3.4227 3.4224 0.8888 31 1 3.4221 3.4218 -0.8912 32 1 5.3572 5.0735 -0.0025 33 1 7.7700 3.9062 -0.8925 34 1 7.7706 3.9072 0.8874 35 1 7.1709 6.4644 0.6922 36 1 9.8778 5.2671 -0.2419 37 1 9.5867 6.4532 1.1033 38 1 8.8835 8.1991 -0.4664 39 1 10.7205 6.5030 -2.0853 40 1 12.9159 7.4960 -4.3921 41 1 7.0285 7.1371 -1.6655 42 1 8.0756 5.7490 -2.1926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100171743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -69.109968 kcal Electronic energy + Delta-G solvation = -19853.714898 eV Core-core repulsion = 16641.276996 eV Total energy + Delta-G solvation = -3212.437902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.97081 -38.60395 -38.08696 -34.73069 -33.31940 -32.78261 -30.75638 -30.12253 -27.37911 -25.10777 -24.23205 -23.38118 -23.10866 -21.06275 -20.44678 -19.05091 -17.60865 -17.04713 -16.75226 -16.26224 -16.12862 -15.57119 -14.90622 -14.75148 -14.50981 -14.12399 -13.80595 -13.47020 -13.27691 -12.97209 -12.71380 -12.35088 -12.09108 -11.90751 -11.81795 -11.42711 -11.37775 -11.36834 -11.24787 -10.86223 -10.54413 -10.29169 -10.12614 -9.91675 -9.89480 -9.83212 -9.50100 -9.06402 -8.88264 -6.97265 -5.79404 -3.08335 2.52446 2.84250 3.41646 3.47155 3.49597 3.62184 4.51809 4.57323 4.67732 4.75150 4.75931 4.91945 4.95251 5.00948 5.05448 5.19833 5.23176 5.34866 5.45527 5.48681 5.49049 5.50810 5.57953 5.74510 5.80587 5.83473 5.91892 6.08009 6.23729 6.29525 6.34730 6.43227 6.58027 6.81173 6.85870 7.10238 7.40807 7.68592 8.11279 8.39167 9.50253 10.08613 10.42690 11.43027 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.002372 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.068686 B =11799.318648 C =12006.102224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.546 6.546 8 N -0.723 5.723 9 C 0.131 3.869 10 C -0.127 4.127 11 C -0.142 4.142 12 C 0.165 3.835 13 N -0.713 5.713 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.161 4.161 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.804 -10.919 10.057 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.424 6.424 8 N -0.374 5.374 9 C 0.008 3.992 10 C -0.147 4.147 11 C -0.181 4.181 12 C 0.053 3.947 13 N -0.351 5.351 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.202 4.202 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.360 -11.278 9.967 25.319 hybrid contribution 0.317 0.745 -0.634 1.028 sum -20.043 -10.533 9.333 24.490 Atomic orbital electron populations 1.21751 0.93700 1.02270 1.03136 1.22452 0.95486 0.83568 1.00323 1.87802 1.21215 1.26786 1.95597 1.22105 0.80562 0.95436 1.01782 1.21473 0.92664 0.98183 1.05682 1.20377 0.89994 0.83497 0.76132 1.90722 1.65420 1.36474 1.49778 1.46037 1.08520 1.07941 1.74928 1.21458 0.78713 0.96865 1.02156 1.22691 0.98273 0.93797 0.99904 1.23425 0.93554 1.00810 1.00354 1.21524 0.88535 0.94950 0.89674 1.42423 1.36213 1.11769 1.44731 1.19349 1.12455 0.89652 1.16019 0.91030 1.24781 0.98629 0.97396 1.00202 1.69671 1.23346 1.27554 1.37424 0.86115 0.77726 0.82882 0.79440 1.20532 1.21842 1.21864 1.23995 1.01213 1.00421 0.94554 0.91809 0.91083 0.91863 0.93252 0.93308 0.92360 0.92441 0.88089 0.87958 0.76415 0.91170 0.91741 0.89345 0.90094 0.91972 0.90744 0.78071 0.93494 0.92742 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.91 10.34 -35.23 -0.36 -4.27 16 4 C 0.08 0.77 5.23 37.16 0.19 0.96 16 5 C -0.14 -1.23 6.07 -27.88 -0.17 -1.39 16 6 C 0.51 6.13 7.83 -10.99 -0.09 6.04 16 7 O -0.55 -8.73 15.98 5.56 0.09 -8.64 16 8 N -0.72 -7.78 5.56 -60.29 -0.33 -8.12 16 9 C 0.13 1.69 5.51 -4.04 -0.02 1.66 16 10 C -0.13 -1.66 3.76 -89.67 -0.34 -1.99 16 11 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 12 C 0.17 3.16 4.47 -67.12 -0.30 2.86 16 13 N -0.71 -17.73 5.41 -52.64 -0.28 -18.02 16 14 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 18 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 C -0.16 -2.61 7.45 -25.77 -0.19 -2.80 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 3.25 8.47 -40.82 -0.35 2.91 16 33 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 39 H 0.39 10.22 7.91 -40.82 -0.32 9.90 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -32.59 351.55 -7.98 -40.57 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.36 Total: 7.65 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.72 Total: -4.28 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.10 Total: -53.59 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.28 Total: -12.91 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.59 -7.98 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100171743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.542 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds