Wall clock time and date at job start Mon Mar 30 2020 01:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42907 * 109.46631 * 2 1 4 4 C 1.42900 * 113.99569 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47002 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47431 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99626 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00066 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00059 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.53781 * 113.61609 * 175.00005 * 10 9 8 12 12 C 1.53781 * 87.08070 * 139.98229 * 11 10 9 13 13 N 1.46497 * 113.61305 * 219.93536 * 12 11 10 14 14 C 1.36944 * 119.99791 * 203.46713 * 13 12 11 15 15 H 1.07993 * 120.00042 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99770 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00274 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46726 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47021 * 120.00168 * 18 16 14 21 21 H 1.48502 * 109.47101 * 240.00261 * 18 16 14 22 22 C 1.53786 * 87.17350 * 334.52830 * 12 11 10 23 23 H 1.08998 * 109.47014 * 60.00262 * 1 2 3 24 24 H 1.09002 * 109.46623 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47081 * 299.99793 * 1 2 3 26 26 H 1.08996 * 109.47113 * 240.00518 * 2 1 3 27 27 H 1.08993 * 109.47487 * 119.99683 * 2 1 3 28 28 H 1.09005 * 109.47463 * 60.00300 * 4 3 2 29 29 H 1.08995 * 109.47025 * 299.99420 * 4 3 2 30 30 H 1.09005 * 109.47358 * 59.99470 * 5 4 3 31 31 H 1.09006 * 109.47182 * 300.00156 * 5 4 3 32 32 H 0.96996 * 120.00586 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.47114 * 60.00231 * 9 8 6 34 34 H 1.09006 * 109.47306 * 300.00712 * 9 8 6 35 35 H 1.08996 * 112.84723 * 43.80825 * 10 9 8 36 36 H 1.08999 * 113.61181 * 25.43284 * 11 10 9 37 37 H 1.08998 * 113.61680 * 254.52836 * 11 10 9 38 38 H 1.09002 * 113.61445 * 89.11830 * 12 11 10 39 39 H 0.96995 * 120.00146 * 23.47603 * 13 12 11 40 40 H 0.96996 * 120.00281 * 179.97438 * 17 16 14 41 41 H 1.08992 * 113.61675 * 140.02412 * 22 12 11 42 42 H 1.09000 * 113.60973 * 270.92699 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 6 5.3275 3.0576 -0.0012 7 8 6.0150 2.0585 -0.0012 8 7 5.9070 4.2744 -0.0022 9 6 7.3674 4.3902 -0.0027 10 6 7.7619 5.8685 -0.0032 11 6 9.2770 6.1019 0.1190 12 6 9.1069 7.2298 -0.9123 13 7 10.1897 7.2927 -1.8971 14 6 10.4523 8.4663 -2.5520 15 1 9.8614 9.3456 -2.3422 16 6 11.4786 8.5260 -3.4848 17 7 12.1990 7.4544 -3.7401 18 14 11.8373 10.1271 -4.3777 19 1 10.8918 11.1745 -3.9147 20 1 13.2300 10.5538 -4.0886 21 1 11.6747 9.9256 -5.8399 22 6 7.8611 6.4804 -1.4134 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.8333 0.9769 -0.8909 29 1 3.8339 0.9767 0.8892 30 1 3.4227 3.4224 0.8888 31 1 3.4221 3.4218 -0.8912 32 1 5.3572 5.0735 -0.0025 33 1 7.7700 3.9062 -0.8925 34 1 7.7706 3.9072 0.8874 35 1 7.1709 6.4644 0.6922 36 1 9.8778 5.2671 -0.2419 37 1 9.5867 6.4532 1.1033 38 1 8.8835 8.1991 -0.4664 39 1 10.7205 6.5030 -2.0853 40 1 12.9159 7.4960 -4.3921 41 1 7.0285 7.1371 -1.6655 42 1 8.0756 5.7490 -2.1926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100171743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:51 Heat of formation + Delta-G solvation = -92.264772 kcal Electronic energy + Delta-G solvation = -19854.718966 eV Core-core repulsion = 16641.276996 eV Total energy + Delta-G solvation = -3213.441970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98055 -39.84505 -38.87752 -36.06287 -35.00559 -33.50469 -32.20386 -31.22734 -28.61948 -26.45172 -25.92962 -24.46888 -23.68117 -22.39024 -21.46576 -20.41199 -19.05979 -18.39653 -17.48318 -17.33683 -17.00520 -16.52762 -16.46937 -16.06886 -15.43125 -15.27682 -15.14615 -14.85627 -14.46166 -14.22973 -13.43232 -13.23187 -13.21100 -13.10124 -12.94711 -12.90750 -12.70093 -12.64031 -12.16432 -12.05653 -12.03524 -12.01468 -11.60357 -11.55000 -11.12000 -10.90670 -10.79340 -10.61390 -10.07425 -8.97349 -7.94656 -5.22958 1.47472 1.48158 1.58258 1.59674 2.00546 2.56703 2.87881 3.37571 3.68856 3.75558 3.77307 3.91875 4.03145 4.13052 4.17378 4.26818 4.35166 4.38625 4.43708 4.48660 4.51549 4.57140 4.74147 4.79612 4.83120 4.92592 4.98603 4.99897 5.04263 5.06735 5.23648 5.28148 5.37255 5.44342 5.53862 5.74624 6.17756 6.27959 6.55202 7.23340 7.33229 8.11987 8.33306 9.29102 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.002372 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.068686 B =11799.318648 C =12006.102224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.079 3.921 5 C -0.129 4.129 6 C 0.512 3.488 7 O -0.592 6.592 8 N -0.711 5.711 9 C 0.137 3.863 10 C -0.094 4.094 11 C -0.137 4.137 12 C 0.142 3.858 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.080 0.920 16 C -0.082 4.082 17 N -0.973 5.973 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.295 1.295 21 H -0.296 1.296 22 C -0.153 4.153 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.419 0.581 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.069 0.931 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.154 -9.882 11.284 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.001 3.999 5 C -0.169 4.169 6 C 0.300 3.700 7 O -0.473 6.473 8 N -0.363 5.363 9 C 0.013 3.987 10 C -0.113 4.113 11 C -0.176 4.176 12 C 0.032 3.968 13 N -0.368 5.368 14 C -0.372 4.372 15 H 0.098 0.902 16 C -0.274 4.274 17 N -0.624 5.624 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.223 1.223 22 C -0.194 4.194 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.256 0.744 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.791 -10.200 11.237 27.382 hybrid contribution 0.980 0.377 -0.955 1.419 sum -21.811 -9.823 10.283 26.037 Atomic orbital electron populations 1.21761 0.92383 1.03441 1.02929 1.22677 0.96606 0.82767 1.00752 1.87782 1.20912 1.28128 1.95620 1.22046 0.80734 0.96186 1.00884 1.21429 0.90024 0.97762 1.07661 1.20927 0.91202 0.82933 0.74926 1.90709 1.66679 1.38039 1.51905 1.45889 1.07715 1.08547 1.74185 1.21225 0.80059 0.96361 1.01070 1.22518 0.96657 0.94076 0.98053 1.23313 0.95584 0.98825 0.99919 1.21981 0.88236 0.96648 0.89907 1.42654 1.37693 1.10484 1.46014 1.19782 1.11597 0.90665 1.15174 0.90196 1.25614 0.99259 1.00595 1.01888 1.69834 1.24271 1.29706 1.38567 0.85064 0.77417 0.79531 0.77703 1.18699 1.22207 1.22343 1.23768 0.99950 0.99790 0.95894 0.92110 0.89277 0.91912 0.93035 0.92739 0.93654 0.93135 0.85599 0.86224 0.74416 0.93690 0.91660 0.85818 0.91599 0.90233 0.90119 0.79704 0.94148 0.91245 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.40 -7.46 10.34 -148.98 -1.54 -9.00 16 4 C 0.08 1.47 5.23 71.98 0.38 1.85 16 5 C -0.13 -1.96 6.07 29.85 0.18 -1.78 16 6 C 0.51 11.41 7.83 87.66 0.69 12.10 16 7 O -0.59 -18.82 15.98 -3.04 -0.05 -18.87 16 8 N -0.71 -13.55 5.56 -463.06 -2.57 -16.12 16 9 C 0.14 3.29 5.51 86.38 0.48 3.77 16 10 C -0.09 -2.19 3.76 -10.18 -0.04 -2.23 16 11 C -0.14 -4.09 7.39 31.12 0.23 -3.86 16 12 C 0.14 5.26 4.47 45.52 0.20 5.46 16 13 N -0.73 -36.70 5.41 -320.44 -1.73 -38.43 16 14 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 17 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 18 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 22 C -0.15 -4.74 7.45 31.21 0.23 -4.51 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.42 5.18 8.47 -92.71 -0.79 4.40 16 33 H 0.04 1.33 7.85 -2.39 -0.02 1.31 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 37 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 39 H 0.37 20.33 7.91 -92.71 -0.73 19.60 16 40 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -71.83 351.55 0.77 -71.07 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.52 Total: 28.73 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.87 Total: -5.52 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -4.02 Total: -114.60 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.59 Total: -27.87 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.83 0.77 -71.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100171743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.200 kcal (2) G-P(sol) polarization free energy of solvation -71.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds