Wall clock time and date at job start Mon Mar 30 2020 01:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42898 * 109.46765 * 2 1 4 4 C 1.42900 * 113.99575 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47361 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 H 1.08999 * 110.88696 * 51.11497 * 9 8 7 11 11 C 1.54913 * 111.00482 * 287.19269 * 9 8 7 12 12 N 1.47418 * 104.83646 * 204.91582 * 11 9 8 13 13 C 1.36937 * 125.65451 * 204.08524 * 12 11 9 14 14 H 1.08002 * 119.99201 * 0.02562 * 13 12 11 15 15 C 1.38812 * 120.00689 * 180.02562 * 13 12 11 16 16 N 1.31622 * 119.99545 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00200 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47221 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47390 * 119.99663 * 17 15 13 20 20 H 1.48503 * 109.46939 * 239.99571 * 17 15 13 21 21 C 1.47022 * 108.70212 * 24.12905 * 12 11 9 22 22 C 1.54323 * 107.27316 * 358.94056 * 21 12 11 23 23 H 1.08999 * 110.72315 * 96.16525 * 22 21 12 24 24 C 1.52996 * 110.87391 * 219.37425 * 22 21 12 25 25 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46905 * 300.00293 * 1 2 3 27 27 H 1.09002 * 109.46624 * 60.00081 * 1 2 3 28 28 H 1.09001 * 109.46905 * 239.99707 * 2 1 3 29 29 H 1.08994 * 109.46778 * 120.00192 * 2 1 3 30 30 H 1.08998 * 109.47421 * 59.99896 * 4 3 2 31 31 H 1.09002 * 109.47461 * 300.00159 * 4 3 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 1.08998 * 110.36634 * 323.75648 * 11 9 8 36 36 H 1.09003 * 110.36516 * 86.07315 * 11 9 8 37 37 H 0.96992 * 119.99683 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.88679 * 239.52692 * 21 12 11 39 39 H 1.08999 * 109.88236 * 118.35898 * 21 12 11 40 40 H 1.09006 * 109.47078 * 173.60681 * 24 22 21 41 41 H 1.08998 * 109.47155 * 293.60548 * 24 22 21 42 42 H 1.09004 * 109.47360 * 53.61303 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1210 3.2663 -0.0008 8 6 5.4987 4.6817 0.0060 9 6 7.0239 4.8025 0.0103 10 1 7.4638 4.1992 -0.7838 11 6 7.6077 4.4145 1.3918 12 7 8.8973 5.1245 1.4695 13 6 9.9642 4.7591 2.2463 14 1 9.9007 3.8812 2.8722 15 6 11.1271 5.5168 2.2294 16 7 11.2045 6.5864 1.4662 17 14 12.5820 5.0186 3.2896 18 1 12.2426 3.7888 4.0496 19 1 13.7592 4.7564 2.4232 20 1 12.9008 6.1148 4.2393 21 6 8.8480 6.2908 0.5756 22 6 7.4647 6.2854 -0.1087 23 1 6.7701 6.9378 0.4205 24 6 7.5813 6.6993 -1.5770 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8333 0.9767 -0.8908 31 1 3.8341 0.9764 0.8891 32 1 5.8075 2.5810 -0.0015 33 1 5.0982 5.1689 -0.8830 34 1 5.0937 5.1616 0.8969 35 1 6.9439 4.7451 2.1906 36 1 7.7637 3.3372 1.4487 37 1 12.0173 7.1156 1.4540 38 1 9.6336 6.2152 -0.1761 39 1 8.9720 7.2065 1.1537 40 1 6.6147 6.5789 -2.0662 41 1 7.8915 7.7425 -1.6369 42 1 8.3207 6.0712 -2.0739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101696715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:49 Heat of formation + Delta-G solvation = -92.364920 kcal Electronic energy + Delta-G solvation = -20819.367393 eV Core-core repulsion = 17605.921080 eV Total energy + Delta-G solvation = -3213.446313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90996 -39.64655 -38.53464 -36.03069 -34.67478 -32.54533 -32.46377 -31.06272 -28.68070 -27.67225 -26.31989 -24.34871 -23.64539 -21.94093 -21.59845 -20.68925 -18.88308 -18.12248 -17.95828 -17.41197 -16.95152 -16.49028 -16.18531 -15.82795 -15.59060 -15.03880 -14.83865 -14.43861 -14.17760 -13.94764 -13.83119 -13.44709 -13.23885 -13.21463 -13.10204 -12.85334 -12.68775 -12.39824 -12.28544 -12.15633 -11.89899 -11.83503 -11.55858 -11.40094 -11.35776 -10.80817 -10.70171 -10.63877 -10.08798 -8.88532 -7.83987 -5.19527 1.46300 1.47305 1.57446 1.59355 1.86010 2.49910 3.06321 3.34234 3.61861 3.70634 3.86833 3.95202 3.96608 4.18887 4.22123 4.34182 4.38386 4.38817 4.50969 4.53382 4.61160 4.74825 4.81989 4.85611 4.86748 4.98245 5.05214 5.09772 5.16535 5.28552 5.34871 5.38618 5.48536 5.49550 5.72496 5.82685 6.13343 6.21318 6.57888 7.11461 7.24032 7.79248 8.43813 9.26528 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.003393 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.356198 B = 8250.784585 C = 9077.233187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.047 3.953 5 C 0.507 3.493 6 O -0.579 6.579 7 N -0.712 5.712 8 C 0.145 3.855 9 C -0.089 4.089 10 H 0.093 0.907 11 C 0.137 3.863 12 N -0.630 5.630 13 C -0.239 4.239 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.296 1.296 21 C 0.192 3.808 22 C -0.103 4.103 23 H 0.072 0.928 24 C -0.127 4.127 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.417 0.583 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.052 0.948 37 H 0.246 0.754 38 H 0.017 0.983 39 H -0.002 1.002 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.265 -13.615 -6.065 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.032 4.032 5 C 0.295 3.705 6 O -0.458 6.458 7 N -0.366 5.366 8 C 0.021 3.979 9 C -0.108 4.108 10 H 0.111 0.889 11 C 0.012 3.988 12 N -0.356 5.356 13 C -0.368 4.368 14 H 0.102 0.898 15 C -0.262 4.262 16 N -0.601 5.601 17 Si 0.806 3.194 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.223 1.223 21 C 0.067 3.933 22 C -0.122 4.122 23 H 0.090 0.910 24 C -0.185 4.185 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.016 0.984 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.808 -12.803 -6.007 21.210 hybrid contribution 1.633 -0.074 0.769 1.806 sum -14.175 -12.876 -5.238 19.854 Atomic orbital electron populations 1.21785 0.93375 1.03445 1.02376 1.22781 0.96150 0.82015 1.01789 1.87980 1.19785 1.28751 1.95804 1.22313 0.83403 0.92148 1.05367 1.20936 0.82322 0.91814 0.75475 1.90704 1.50831 1.53589 1.50664 1.45821 1.07007 1.09042 1.74713 1.21135 0.93131 0.81742 1.01868 1.22468 0.93270 0.97114 0.97989 0.88855 1.21781 0.86325 0.96015 0.94713 1.44814 1.11827 1.28966 1.49982 1.19511 0.91463 1.08196 1.17634 0.89777 1.25667 1.00992 0.97879 1.01679 1.70202 1.27405 1.18878 1.43643 0.85012 0.79072 0.77506 0.77764 1.18781 1.21876 1.22302 1.20977 0.92594 0.88616 0.91159 1.22320 0.96788 0.95533 0.97602 0.91002 1.21637 1.02041 1.01140 0.93649 0.88554 0.92887 0.92702 0.91380 0.91651 0.87078 0.87543 0.74642 0.90872 0.92690 0.96647 0.92933 0.94513 0.96446 0.98385 0.90639 0.92840 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.25 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.40 -9.14 9.88 -129.94 -1.28 -10.42 16 4 C 0.05 0.80 6.42 71.24 0.46 1.26 16 5 C 0.51 12.94 7.91 87.66 0.69 13.63 16 6 O -0.58 -20.93 16.50 16.00 0.26 -20.67 16 7 N -0.71 -15.71 5.50 -463.07 -2.55 -18.26 16 8 C 0.15 3.88 5.13 86.38 0.44 4.33 16 9 C -0.09 -2.71 2.49 -9.40 -0.02 -2.74 16 10 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 11 C 0.14 5.21 6.65 86.86 0.58 5.79 16 12 N -0.63 -31.82 3.39 -691.99 -2.35 -34.16 16 13 C -0.24 -13.24 10.28 84.03 0.86 -12.37 16 14 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 15 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 16 N -0.95 -57.49 10.31 21.65 0.22 -57.27 16 17 Si 0.98 45.56 29.55 68.60 2.03 47.58 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 C 0.19 9.38 4.97 86.73 0.43 9.81 16 22 C -0.10 -3.63 3.01 -9.60 -0.03 -3.66 16 23 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 24 C -0.13 -3.73 9.17 71.98 0.66 -3.07 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.42 6.78 8.47 -92.71 -0.79 6.00 16 33 H 0.07 1.92 8.09 -2.38 -0.02 1.91 16 34 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 35 H 0.02 0.62 7.91 -2.39 -0.02 0.60 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 38 H 0.02 0.95 7.02 -2.39 -0.02 0.93 16 39 H 0.00 -0.12 7.51 -2.39 -0.02 -0.14 16 40 H 0.07 1.79 8.09 -2.38 -0.02 1.77 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.53 8.07 -2.38 -0.02 1.51 16 Total: -1.00 -76.07 343.52 2.29 -73.78 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.20 Total: 10.02 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.76 Total: 9.40 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -4.67 Total: -109.69 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.02 Total: -31.09 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.07 2.29 -73.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101696715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.582 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds