Wall clock time and date at job start Mon Mar 30 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46950 * 2 1 4 4 C 1.42894 * 113.99700 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46994 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99980 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00343 * 179.97438 * 5 4 3 8 8 C 1.47486 * 127.03579 * 179.97438 * 7 5 4 9 9 C 1.54003 * 107.08454 * 154.29172 * 8 7 5 10 10 H 1.08993 * 110.32784 * 120.19822 * 9 8 7 11 11 C 1.53001 * 110.32182 * 242.31216 * 9 8 7 12 12 N 1.46494 * 109.47490 * 293.54027 * 11 9 8 13 13 C 1.36927 * 120.00432 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.38818 * 120.00484 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99630 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46859 * 120.00197 * 17 15 13 20 20 H 1.48498 * 109.47003 * 239.99835 * 17 15 13 21 21 C 1.54620 * 105.03961 * 1.30302 * 9 8 7 22 22 H 1.09004 * 110.73930 * 263.50537 * 21 9 8 23 23 C 1.53007 * 110.73501 * 140.37131 * 21 9 8 24 24 C 1.48113 * 127.02791 * 359.68155 * 7 5 4 25 25 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46646 * 299.99697 * 1 2 3 27 27 H 1.09000 * 109.47115 * 60.00029 * 1 2 3 28 28 H 1.09000 * 109.46906 * 240.00755 * 2 1 3 29 29 H 1.08992 * 109.47264 * 120.00251 * 2 1 3 30 30 H 1.09001 * 109.47655 * 60.00336 * 4 3 2 31 31 H 1.09008 * 109.47223 * 299.99834 * 4 3 2 32 32 H 1.08999 * 109.91088 * 273.65318 * 8 7 5 33 33 H 1.09002 * 109.90796 * 34.73635 * 8 7 5 34 34 H 1.08998 * 109.47318 * 53.54622 * 11 9 8 35 35 H 1.09010 * 109.46802 * 173.54224 * 11 9 8 36 36 H 0.97000 * 119.99385 * 0.02562 * 12 11 9 37 37 H 0.96995 * 120.00053 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46934 * 59.99837 * 23 21 9 39 39 H 1.08998 * 109.47022 * 179.97438 * 23 21 9 40 40 H 1.08993 * 109.46865 * 300.00321 * 23 21 9 41 41 H 1.08997 * 110.66402 * 337.99428 * 24 7 5 42 42 H 1.08998 * 110.66769 * 101.11840 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7730 0.0005 7 7 5.1209 3.2664 0.0002 8 6 5.6728 4.6341 0.0004 9 6 7.0721 4.5573 0.6391 10 1 7.8292 4.9017 -0.0653 11 6 7.1185 5.3940 1.9192 12 7 6.9676 6.8116 1.5819 13 6 6.9789 7.7562 2.5731 14 1 7.0996 7.4563 3.6036 15 6 6.8354 9.0995 2.2535 16 7 6.6879 9.4650 0.9977 17 14 6.8516 10.3882 3.6056 18 1 7.0307 9.7231 4.9212 19 1 7.9719 11.3350 3.3736 20 1 5.5658 11.1310 3.5969 21 6 7.2827 3.0606 0.9650 22 1 7.0296 2.8526 2.0047 23 6 8.7225 2.6384 0.6653 24 6 6.2895 2.3564 0.0063 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 5.7513 5.0028 -1.0224 33 1 5.0306 5.2935 0.5843 34 1 6.3081 5.0899 2.5816 35 1 8.0744 5.2394 2.4198 36 1 6.8597 7.0810 0.6563 37 1 6.5873 10.4035 0.7743 38 1 9.4084 3.2305 1.2713 39 1 8.8482 1.5820 0.9025 40 1 8.9368 2.8021 -0.3907 41 1 6.0114 1.3759 0.3929 42 1 6.7153 2.2703 -0.9933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105789517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:04 Heat of formation + Delta-G solvation = -72.934648 kcal Electronic energy + Delta-G solvation = -21006.087517 eV Core-core repulsion = 17793.483764 eV Total energy + Delta-G solvation = -3212.603753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09748 -38.43644 -37.26520 -34.62104 -32.86396 -31.76681 -31.38404 -29.44286 -27.71265 -26.30486 -25.01683 -23.19001 -23.02218 -21.18083 -19.93128 -19.26861 -17.40260 -17.02541 -16.71543 -16.51363 -15.81306 -15.30216 -14.76578 -14.41156 -14.15956 -13.65583 -13.50703 -13.27609 -13.12685 -12.82625 -12.69166 -12.62108 -12.46424 -11.93537 -11.80989 -11.62076 -11.45994 -11.43056 -11.07465 -10.86193 -10.61437 -10.49416 -10.29627 -9.94397 -9.92717 -9.66538 -9.62199 -8.85466 -8.55713 -6.89412 -5.72926 -3.01831 2.65710 2.69765 3.46755 3.52098 3.54559 3.72182 4.42309 4.50920 4.62610 4.75042 4.80698 4.81774 4.95709 4.99893 5.02008 5.07247 5.29778 5.33859 5.39843 5.47027 5.51080 5.61528 5.64895 5.71125 5.77254 5.88159 5.98975 6.07902 6.15838 6.19279 6.27735 6.43127 6.48847 6.73240 6.85226 6.89819 7.61649 7.73793 8.27311 8.45592 9.56922 10.13689 10.48220 11.49986 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.003949 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.338075 B = 7088.406822 C = 8104.492765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.052 3.948 5 C 0.528 3.472 6 O -0.515 6.515 7 N -0.621 5.621 8 C 0.113 3.887 9 C -0.102 4.102 10 H 0.087 0.913 11 C 0.163 3.837 12 N -0.733 5.733 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C -0.100 4.100 22 H 0.084 0.916 23 C -0.140 4.140 24 C 0.102 3.898 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -23.515 -3.851 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.028 4.028 5 C 0.315 3.685 6 O -0.389 6.389 7 N -0.357 5.357 8 C -0.009 4.009 9 C -0.122 4.122 10 H 0.105 0.895 11 C 0.035 3.965 12 N -0.377 5.377 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.120 4.120 22 H 0.103 0.897 23 C -0.197 4.197 24 C -0.022 4.022 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.606 -22.830 -3.690 23.273 hybrid contribution 0.254 0.594 0.390 0.754 sum -2.353 -22.236 -3.300 22.603 Atomic orbital electron populations 1.21733 0.93390 1.02144 1.03600 1.22541 0.96036 0.83444 1.00067 1.88042 1.18581 1.26242 1.95386 1.22136 0.83759 0.94707 1.02214 1.19787 0.81039 0.90385 0.77306 1.90773 1.48256 1.51788 1.48119 1.48761 1.04230 1.09193 1.73528 1.22185 0.94719 0.82742 1.01213 1.22389 0.96033 0.94346 0.99418 0.89461 1.20694 0.97805 0.85321 0.92671 1.42369 1.88156 0.99748 1.07422 1.19249 1.41873 0.87035 0.88889 0.91187 1.24747 1.02853 0.97122 0.96249 1.69667 1.56800 1.15818 1.15784 0.86116 0.77179 0.81894 0.81003 1.20584 1.21900 1.21834 1.22300 0.94984 0.94957 0.99767 0.89719 1.21732 0.95105 1.00897 1.01986 1.22681 0.86068 0.93423 0.99986 0.91027 0.91601 0.91649 0.93277 0.93225 0.90530 0.90455 0.91705 0.89039 0.96295 0.96033 0.78238 0.93553 0.91711 0.92706 0.92386 0.90638 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.36 -4.91 9.88 -55.14 -0.54 -5.45 16 4 C 0.05 0.59 5.35 36.01 0.19 0.78 16 5 C 0.53 8.51 7.97 -10.98 -0.09 8.42 16 6 O -0.52 -11.07 16.83 -14.36 -0.24 -11.32 16 7 N -0.62 -8.99 3.29 -169.75 -0.56 -9.55 16 8 C 0.11 1.93 6.30 -2.98 -0.02 1.91 16 9 C -0.10 -1.58 2.64 -89.24 -0.24 -1.82 16 10 H 0.09 1.34 7.85 -51.93 -0.41 0.93 16 11 C 0.16 3.25 5.35 -4.04 -0.02 3.23 16 12 N -0.73 -18.74 5.33 -59.91 -0.32 -19.06 16 13 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 14 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 17 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 C -0.10 -1.14 3.20 -88.72 -0.28 -1.42 16 22 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 23 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16 24 C 0.10 1.02 6.40 -2.11 -0.01 1.00 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.69 7.90 -51.92 -0.41 0.28 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.94 7.48 -51.93 -0.39 1.55 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.38 10.28 7.51 -40.82 -0.31 9.97 16 37 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.08 0.55 7.23 -51.93 -0.38 0.18 16 42 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -35.48 345.76 -7.83 -43.31 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.33 Total: 3.37 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 0.26 Total: 3.59 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.15 Total: -56.62 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.79 Total: -16.77 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.48 -7.83 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105789517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.628 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds