Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46950 * 2 1 4 4 C 1.42894 * 113.99700 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46994 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99980 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00343 * 179.97438 * 5 4 3 8 8 C 1.47486 * 127.03579 * 179.97438 * 7 5 4 9 9 C 1.54003 * 107.08454 * 154.29172 * 8 7 5 10 10 H 1.08993 * 110.32784 * 120.19822 * 9 8 7 11 11 C 1.53001 * 110.32182 * 242.31216 * 9 8 7 12 12 N 1.46494 * 109.47490 * 293.54027 * 11 9 8 13 13 C 1.36927 * 120.00432 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99996 * 0.02562 * 13 12 11 15 15 C 1.38818 * 120.00484 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99630 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46859 * 120.00197 * 17 15 13 20 20 H 1.48498 * 109.47003 * 239.99835 * 17 15 13 21 21 C 1.54620 * 105.03961 * 1.30302 * 9 8 7 22 22 H 1.09004 * 110.73930 * 263.50537 * 21 9 8 23 23 C 1.53007 * 110.73501 * 140.37131 * 21 9 8 24 24 C 1.48113 * 127.02791 * 359.68155 * 7 5 4 25 25 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46646 * 299.99697 * 1 2 3 27 27 H 1.09000 * 109.47115 * 60.00029 * 1 2 3 28 28 H 1.09000 * 109.46906 * 240.00755 * 2 1 3 29 29 H 1.08992 * 109.47264 * 120.00251 * 2 1 3 30 30 H 1.09001 * 109.47655 * 60.00336 * 4 3 2 31 31 H 1.09008 * 109.47223 * 299.99834 * 4 3 2 32 32 H 1.08999 * 109.91088 * 273.65318 * 8 7 5 33 33 H 1.09002 * 109.90796 * 34.73635 * 8 7 5 34 34 H 1.08998 * 109.47318 * 53.54622 * 11 9 8 35 35 H 1.09010 * 109.46802 * 173.54224 * 11 9 8 36 36 H 0.97000 * 119.99385 * 0.02562 * 12 11 9 37 37 H 0.96995 * 120.00053 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46934 * 59.99837 * 23 21 9 39 39 H 1.08998 * 109.47022 * 179.97438 * 23 21 9 40 40 H 1.08993 * 109.46865 * 300.00321 * 23 21 9 41 41 H 1.08997 * 110.66402 * 337.99428 * 24 7 5 42 42 H 1.08998 * 110.66769 * 101.11840 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 0.0001 6 8 2.9609 3.7730 0.0005 7 7 5.1209 3.2664 0.0002 8 6 5.6728 4.6341 0.0004 9 6 7.0721 4.5573 0.6391 10 1 7.8292 4.9017 -0.0653 11 6 7.1185 5.3940 1.9192 12 7 6.9676 6.8116 1.5819 13 6 6.9789 7.7562 2.5731 14 1 7.0996 7.4563 3.6036 15 6 6.8354 9.0995 2.2535 16 7 6.6879 9.4650 0.9977 17 14 6.8516 10.3882 3.6056 18 1 7.0307 9.7231 4.9212 19 1 7.9719 11.3350 3.3736 20 1 5.5658 11.1310 3.5969 21 6 7.2827 3.0606 0.9650 22 1 7.0296 2.8526 2.0047 23 6 8.7225 2.6384 0.6653 24 6 6.2895 2.3564 0.0063 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9765 0.8892 32 1 5.7513 5.0028 -1.0224 33 1 5.0306 5.2935 0.5843 34 1 6.3081 5.0899 2.5816 35 1 8.0744 5.2394 2.4198 36 1 6.8597 7.0810 0.6563 37 1 6.5873 10.4035 0.7743 38 1 9.4084 3.2305 1.2713 39 1 8.8482 1.5820 0.9025 40 1 8.9368 2.8021 -0.3907 41 1 6.0114 1.3759 0.3929 42 1 6.7153 2.2703 -0.9933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105789517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = -98.017230 kcal Electronic energy + Delta-G solvation = -21007.175179 eV Core-core repulsion = 17793.483764 eV Total energy + Delta-G solvation = -3213.691415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26866 -39.48315 -38.36486 -36.46943 -34.23845 -33.07685 -32.45552 -30.89694 -28.93090 -27.18595 -26.61427 -24.95585 -23.67858 -22.54644 -21.08436 -20.45778 -19.20900 -18.27932 -17.67345 -17.45825 -16.91007 -16.66695 -16.40309 -15.68026 -15.37189 -15.20482 -15.10790 -14.47399 -14.14123 -13.98152 -13.80009 -13.62184 -13.25111 -13.22391 -13.11490 -12.87423 -12.79180 -12.52095 -12.32319 -12.16781 -12.11529 -11.96883 -11.85947 -11.49187 -11.37326 -10.99576 -10.89638 -10.66935 -9.78258 -9.03369 -7.98049 -5.27190 1.44019 1.46135 1.50192 1.55805 1.63396 2.53363 2.90043 3.34976 3.42409 3.54114 3.74274 3.79229 4.10696 4.15563 4.18310 4.24745 4.28800 4.34432 4.45608 4.51285 4.55116 4.57133 4.66950 4.77826 4.81039 4.90149 4.93089 5.00910 5.03086 5.10457 5.22444 5.26620 5.27848 5.39786 5.45850 5.58503 6.12995 6.24345 6.51225 7.08421 7.30316 8.05900 8.28623 9.25754 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.003949 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.338075 B = 7088.406822 C = 8104.492765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.061 3.939 5 C 0.515 3.485 6 O -0.588 6.588 7 N -0.618 5.618 8 C 0.115 3.885 9 C -0.092 4.092 10 H 0.091 0.909 11 C 0.163 3.837 12 N -0.746 5.746 13 C -0.247 4.247 14 H 0.074 0.926 15 C -0.077 4.077 16 N -0.969 5.969 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.296 1.296 21 C -0.092 4.092 22 H 0.083 0.917 23 C -0.134 4.134 24 C 0.102 3.898 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.005 0.995 35 H 0.032 0.968 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -26.975 -3.520 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.328 6.328 4 C -0.018 4.018 5 C 0.305 3.695 6 O -0.468 6.468 7 N -0.353 5.353 8 C -0.008 4.008 9 C -0.112 4.112 10 H 0.109 0.891 11 C 0.037 3.963 12 N -0.389 5.389 13 C -0.378 4.378 14 H 0.092 0.908 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.223 1.223 21 C -0.111 4.111 22 H 0.101 0.899 23 C -0.192 4.192 24 C -0.018 4.018 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.159 -26.373 -3.335 26.608 hybrid contribution -0.192 1.608 0.297 1.646 sum -1.351 -24.765 -3.038 24.987 Atomic orbital electron populations 1.21799 0.93550 1.03540 1.02217 1.22807 0.96047 0.81723 1.02053 1.88004 1.19804 1.29199 1.95816 1.22233 0.83389 0.90777 1.05443 1.20928 0.80626 0.92280 0.75687 1.90733 1.50342 1.54163 1.51524 1.48875 1.05251 1.08810 1.72321 1.21924 0.94789 0.84010 1.00063 1.22276 0.94928 0.97004 0.96975 0.89074 1.20834 0.97309 0.83192 0.94992 1.42601 1.88040 1.01784 1.06451 1.19661 1.40516 0.87960 0.89694 0.90768 1.25612 1.03465 0.99320 0.98542 1.69826 1.58482 1.15879 1.17803 0.85054 0.76697 0.79041 0.78858 1.18960 1.21526 1.22314 1.22308 0.97263 0.91316 1.00240 0.89862 1.21708 0.92635 1.02467 1.02340 1.23044 0.83602 0.93956 1.01247 0.88193 0.93127 0.92932 0.91021 0.91264 0.86704 0.87117 0.92135 0.94439 0.97687 0.95015 0.79447 0.93977 0.92964 0.89699 0.91540 0.86366 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.41 -10.48 9.88 -129.94 -1.28 -11.76 16 4 C 0.06 1.20 5.35 71.24 0.38 1.58 16 5 C 0.51 16.49 7.97 87.66 0.70 17.19 16 6 O -0.59 -26.74 16.83 15.98 0.27 -26.47 16 7 N -0.62 -17.30 3.29 -809.34 -2.66 -19.96 16 8 C 0.12 4.09 6.30 86.53 0.55 4.63 16 9 C -0.09 -2.83 2.64 -9.90 -0.03 -2.86 16 10 H 0.09 2.74 7.85 -2.39 -0.02 2.73 16 11 C 0.16 6.64 5.35 86.38 0.46 7.10 16 12 N -0.75 -39.52 5.33 -343.45 -1.83 -41.35 16 13 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 14 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 15 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 16 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 17 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 21 C -0.09 -1.80 3.20 -9.57 -0.03 -1.84 16 22 H 0.08 1.71 7.87 -2.38 -0.02 1.69 16 23 C -0.13 -1.92 9.17 71.98 0.66 -1.26 16 24 C 0.10 1.63 6.40 86.74 0.56 2.18 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.45 7.90 -2.38 -0.02 1.43 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.72 7.48 -2.39 -0.02 1.70 16 34 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.37 21.00 7.51 -92.71 -0.70 20.31 16 37 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 41 H 0.12 0.98 7.23 -2.39 -0.02 0.96 16 42 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 Total: -1.00 -83.51 345.76 2.86 -80.65 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.29 Total: 21.55 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.77 Total: 8.72 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -4.21 Total: -122.66 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.01 Total: -38.23 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -83.51 2.86 -80.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105789517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.367 kcal (2) G-P(sol) polarization free energy of solvation -83.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds