Wall clock time and date at job start Mon Mar 30 2020 01:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00279 * 2 1 4 4 C 1.53004 * 109.47206 * 66.04296 * 3 2 1 5 5 C 1.53004 * 109.46916 * 179.97438 * 4 3 2 6 6 F 1.39897 * 109.46676 * 180.02562 * 5 4 3 7 7 C 1.38589 * 110.99878 * 236.04457 * 2 1 3 8 8 N 1.31214 * 126.47321 * 123.97959 * 7 2 1 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 2 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 303.67245 * 7 2 1 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 2 23 23 H 1.08991 * 109.47322 * 183.95666 * 1 2 3 24 24 H 1.08997 * 109.46717 * 303.95743 * 1 2 3 25 25 H 1.09004 * 109.47145 * 63.95312 * 1 2 3 26 26 H 1.08999 * 109.47408 * 186.04815 * 3 2 1 27 27 H 1.09008 * 109.46929 * 306.04505 * 3 2 1 28 28 H 1.08992 * 109.47158 * 300.00204 * 4 3 2 29 29 H 1.09004 * 109.46302 * 60.00409 * 4 3 2 30 30 H 1.09000 * 109.46791 * 299.99970 * 5 4 3 31 31 H 1.08994 * 109.46988 * 60.00557 * 5 4 3 32 32 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 33 33 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 34 34 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 35 35 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 36 36 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 38 38 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 39 39 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1805 3.4856 1.3184 6 9 1.8481 4.1127 2.5240 7 6 1.9657 -0.7227 -1.0732 8 7 2.7957 -0.2856 -1.9906 9 7 3.0496 -1.2234 -2.8322 10 6 2.4023 -2.3054 -2.5040 11 6 2.4343 -3.6222 -3.2363 12 6 3.5625 -4.4903 -2.6756 13 6 3.5948 -5.8068 -3.4083 14 1 2.8819 -6.0046 -4.1949 15 6 4.5341 -6.7590 -3.0737 16 7 5.4021 -6.5183 -2.1154 17 14 4.5739 -8.3912 -3.9815 18 1 4.8091 -8.1477 -5.4274 19 1 5.6689 -9.2337 -3.4373 20 1 3.2756 -9.0892 -3.8018 21 7 1.6884 -2.0248 -1.3721 22 6 0.8089 -2.9340 -0.6329 23 1 -0.3633 -1.0251 0.0709 24 1 -0.3632 0.5740 0.8524 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9273 -0.8310 28 1 0.5473 2.0845 1.4265 29 1 2.0659 1.5015 2.1491 30 1 3.2648 3.4580 1.2105 31 1 1.7465 4.0417 0.4876 32 1 1.4815 -4.1347 -3.1042 33 1 2.6066 -3.4435 -4.2977 34 1 4.5153 -3.9778 -2.8077 35 1 3.3902 -4.6690 -1.6142 36 1 6.0631 -7.1882 -1.8803 37 1 -0.2050 -2.8579 -1.0255 38 1 1.1666 -3.9575 -0.7462 39 1 0.8112 -2.6632 0.4229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121494072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:48 Heat of formation + Delta-G solvation = 22.167162 kcal Electronic energy + Delta-G solvation = -20481.195889 eV Core-core repulsion = 17181.548506 eV Total energy + Delta-G solvation = -3299.647383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.155 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.87104 -42.63807 -38.15319 -34.93896 -34.03639 -32.89049 -31.56900 -28.96616 -27.63861 -26.91737 -25.38046 -24.63740 -22.16491 -21.63006 -20.57669 -19.89545 -17.16859 -16.76850 -16.54770 -16.35292 -16.09752 -15.76167 -15.13740 -14.77726 -14.55538 -14.50183 -13.66337 -13.47482 -13.26056 -13.11528 -12.82485 -12.33848 -12.28619 -11.83560 -11.66503 -11.43363 -11.29483 -11.11449 -10.98857 -10.89885 -10.75329 -10.40225 -10.07465 -9.91209 -9.76677 -9.42603 -9.25038 -8.42370 -7.96759 -6.06571 -4.11228 2.09351 2.43535 3.23229 3.29660 3.34991 3.36856 3.58438 4.36646 4.39825 4.43351 4.52504 4.69527 4.77052 4.88941 4.92460 5.03625 5.09957 5.14514 5.24109 5.29169 5.35431 5.40135 5.46400 5.58091 5.65030 5.67641 5.89174 6.13581 6.30368 6.43285 6.57069 6.65629 6.88619 7.36356 7.53720 7.67519 7.90563 8.27727 8.94815 9.16905 9.53483 11.04419 Molecular weight = 270.16amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.003219 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.360116 B = 8697.231053 C = 8817.676196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.451 5.451 3 C 0.074 3.926 4 C -0.152 4.152 5 C 0.064 3.936 6 F -0.219 7.219 7 C 0.333 3.667 8 N -0.324 5.324 9 N -0.295 5.295 10 C 0.213 3.787 11 C -0.031 4.031 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.482 5.482 22 C 0.074 3.926 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 14.384 7.170 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.174 5.174 3 C -0.054 4.054 4 C -0.190 4.190 5 C 0.008 3.992 6 F -0.200 7.200 7 C -0.024 4.024 8 N -0.169 5.169 9 N -0.133 5.133 10 C -0.054 4.054 11 C -0.071 4.071 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.177 5.177 22 C -0.069 4.069 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.263 15.040 6.984 20.045 hybrid contribution -1.019 -1.523 -0.110 1.835 sum -12.282 13.517 6.874 19.514 Atomic orbital electron populations 1.22712 0.84901 1.03638 1.02126 1.58588 1.08737 1.14883 1.35157 1.21908 1.02346 0.84775 0.96347 1.22217 1.02520 0.95168 0.99125 1.21890 1.01697 0.92492 0.83103 1.92766 1.94463 1.83994 1.48805 1.22413 1.01124 0.84150 0.94704 1.74476 1.17091 1.23439 1.01907 1.73981 1.21065 0.97294 1.20925 1.25575 0.93000 0.99678 0.87194 1.20440 1.02269 0.85541 0.98800 1.19070 0.92307 0.93285 0.95986 1.21101 1.16261 0.99706 1.19357 0.92338 1.25015 0.95372 0.98734 0.95117 1.69964 1.18424 1.35041 1.29599 0.86611 0.77601 0.83363 0.80159 1.20070 1.21267 1.20216 1.46044 1.38053 1.09970 1.23652 1.22123 0.93066 0.94883 0.96793 0.90532 0.89412 0.94171 0.88546 0.92712 0.90566 0.89568 0.90234 0.90611 0.91238 0.89268 0.95596 0.96762 0.92771 0.90757 0.88034 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.17 60.07 0.55 0.67 16 2 N -0.45 -5.55 4.81 -182.37 -0.88 -6.43 16 3 C 0.07 0.77 4.44 -3.82 -0.02 0.75 16 4 C -0.15 -1.19 5.60 -26.73 -0.15 -1.34 16 5 C 0.06 0.46 7.55 37.16 0.28 0.75 16 6 F -0.22 -2.17 17.36 2.25 0.04 -2.13 16 7 C 0.33 5.48 7.20 -318.87 -2.30 3.19 16 8 N -0.32 -6.35 11.16 30.32 0.34 -6.02 16 9 N -0.29 -6.38 12.18 32.99 0.40 -5.98 16 10 C 0.21 4.22 7.32 -154.02 -1.13 3.09 16 11 C -0.03 -0.62 5.36 -27.88 -0.15 -0.77 16 12 C 0.03 0.80 4.95 -27.88 -0.14 0.66 16 13 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 N -0.48 -7.97 3.21 -121.45 -0.39 -8.36 16 22 C 0.07 0.89 9.21 59.85 0.55 1.44 16 23 H 0.08 0.63 5.42 -51.93 -0.28 0.35 16 24 H 0.09 0.58 6.30 -51.93 -0.33 0.26 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 1.16 7.75 -51.93 -0.40 0.76 16 27 H 0.05 0.56 8.12 -51.92 -0.42 0.14 16 28 H 0.08 0.53 6.47 -51.93 -0.34 0.19 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.07 0.68 7.86 -51.93 -0.41 0.28 16 38 H 0.10 1.31 7.88 -51.92 -0.41 0.90 16 39 H 0.09 0.91 7.57 -51.93 -0.39 0.52 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -33.49 326.56 -8.65 -42.13 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.89 Total: -3.90 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.91 Total: -4.58 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.21 Total: -52.49 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.49 -8.65 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds