Wall clock time and date at job start Mon Mar 30 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00279 * 2 1 4 4 C 1.53004 * 109.47206 * 66.04296 * 3 2 1 5 5 C 1.53004 * 109.46916 * 179.97438 * 4 3 2 6 6 F 1.39897 * 109.46676 * 180.02562 * 5 4 3 7 7 C 1.38589 * 110.99878 * 236.04457 * 2 1 3 8 8 N 1.31214 * 126.47321 * 123.97959 * 7 2 1 9 9 N 1.28527 * 109.85861 * 179.74117 * 8 7 2 10 10 C 1.30288 * 110.05517 * 359.97438 * 9 8 7 11 11 C 1.50706 * 126.34930 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.46861 * 89.97908 * 11 10 9 13 13 C 1.50706 * 109.46859 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00209 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46831 * 59.99611 * 17 15 13 19 19 H 1.48492 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46978 * 300.00123 * 17 15 13 21 21 N 1.36451 * 126.47197 * 303.67245 * 7 2 1 22 22 C 1.46506 * 127.13577 * 0.23829 * 21 7 2 23 23 H 1.08991 * 109.47322 * 183.95666 * 1 2 3 24 24 H 1.08997 * 109.46717 * 303.95743 * 1 2 3 25 25 H 1.09004 * 109.47145 * 63.95312 * 1 2 3 26 26 H 1.08999 * 109.47408 * 186.04815 * 3 2 1 27 27 H 1.09008 * 109.46929 * 306.04505 * 3 2 1 28 28 H 1.08992 * 109.47158 * 300.00204 * 4 3 2 29 29 H 1.09004 * 109.46302 * 60.00409 * 4 3 2 30 30 H 1.09000 * 109.46791 * 299.99970 * 5 4 3 31 31 H 1.08994 * 109.46988 * 60.00557 * 5 4 3 32 32 H 1.08998 * 109.47064 * 209.98253 * 11 10 9 33 33 H 1.09000 * 109.46741 * 329.97784 * 11 10 9 34 34 H 1.08998 * 109.47563 * 300.00039 * 12 11 10 35 35 H 1.09000 * 109.47543 * 60.00368 * 12 11 10 36 36 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.47162 * 90.00308 * 22 21 7 38 38 H 1.09007 * 109.46895 * 210.00549 * 22 21 7 39 39 H 1.08998 * 109.46920 * 329.99582 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1805 3.4856 1.3184 6 9 1.8481 4.1127 2.5240 7 6 1.9657 -0.7227 -1.0732 8 7 2.7957 -0.2856 -1.9906 9 7 3.0496 -1.2234 -2.8322 10 6 2.4023 -2.3054 -2.5040 11 6 2.4343 -3.6222 -3.2363 12 6 3.5625 -4.4903 -2.6756 13 6 3.5948 -5.8068 -3.4083 14 1 2.8819 -6.0046 -4.1949 15 6 4.5341 -6.7590 -3.0737 16 7 5.4021 -6.5183 -2.1154 17 14 4.5739 -8.3912 -3.9815 18 1 4.8091 -8.1477 -5.4274 19 1 5.6689 -9.2337 -3.4373 20 1 3.2756 -9.0892 -3.8018 21 7 1.6884 -2.0248 -1.3721 22 6 0.8089 -2.9340 -0.6329 23 1 -0.3633 -1.0251 0.0709 24 1 -0.3632 0.5740 0.8524 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9273 -0.8310 28 1 0.5473 2.0845 1.4265 29 1 2.0659 1.5015 2.1491 30 1 3.2648 3.4580 1.2105 31 1 1.7465 4.0417 0.4876 32 1 1.4815 -4.1347 -3.1042 33 1 2.6066 -3.4435 -4.2977 34 1 4.5153 -3.9778 -2.8077 35 1 3.3902 -4.6690 -1.6142 36 1 6.0631 -7.1882 -1.8803 37 1 -0.2050 -2.8579 -1.0255 38 1 1.1666 -3.9575 -0.7462 39 1 0.8112 -2.6632 0.4229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121494072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:47 Heat of formation + Delta-G solvation = 2.762264 kcal Electronic energy + Delta-G solvation = -20482.037348 eV Core-core repulsion = 17181.548506 eV Total energy + Delta-G solvation = -3300.488842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.155 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.56011 -44.00490 -39.12368 -36.40318 -35.68438 -34.07272 -33.13575 -30.41321 -28.82550 -27.85424 -27.00854 -25.67024 -23.76794 -22.74507 -21.73837 -21.30961 -18.64599 -18.14597 -17.64986 -17.38476 -17.18049 -16.68837 -16.49903 -15.98984 -15.69316 -15.49996 -14.88581 -14.84429 -14.41151 -14.37567 -14.09695 -13.89277 -13.28536 -13.05381 -12.83272 -12.69891 -12.60669 -12.48151 -12.39757 -12.05253 -12.02452 -11.83769 -11.53330 -11.44026 -11.30162 -11.15311 -10.73761 -10.56192 -9.27717 -8.19830 -6.32622 0.77672 1.23899 1.43837 1.47134 1.54707 1.79477 2.42429 2.55941 3.14357 3.45222 3.67617 3.73152 3.80040 3.84352 3.98575 4.09136 4.23128 4.26703 4.28944 4.38610 4.52613 4.53981 4.62043 4.63266 4.66433 4.82122 4.83344 4.88937 4.96935 5.06280 5.22092 5.44275 5.47848 5.58743 5.64942 5.78865 6.13260 6.18090 6.83635 7.37671 7.74583 8.92046 Molecular weight = 270.16amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.003219 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.360116 B = 8697.231053 C = 8817.676196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.451 5.451 3 C 0.074 3.926 4 C -0.139 4.139 5 C 0.061 3.939 6 F -0.232 7.232 7 C 0.350 3.650 8 N -0.361 5.361 9 N -0.332 5.332 10 C 0.195 3.805 11 C -0.013 4.013 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.074 0.926 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.260 1.260 21 N -0.481 5.481 22 C 0.066 3.934 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.088 0.912 34 H -0.020 1.020 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 14.187 7.529 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.175 5.175 3 C -0.053 4.053 4 C -0.177 4.177 5 C 0.006 3.994 6 F -0.214 7.214 7 C -0.008 4.008 8 N -0.205 5.205 9 N -0.171 5.171 10 C -0.074 4.074 11 C -0.053 4.053 12 C 0.004 3.996 13 C -0.578 4.578 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.184 1.184 21 N -0.175 5.175 22 C -0.075 4.075 23 H 0.106 0.894 24 H 0.136 0.864 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.106 0.894 34 H -0.001 1.001 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.770 14.852 7.353 21.547 hybrid contribution -0.277 -1.371 -0.110 1.403 sum -14.048 13.481 7.243 20.773 Atomic orbital electron populations 1.22899 0.82164 1.05051 1.03461 1.58790 1.10918 1.15395 1.32414 1.21933 1.01124 0.84131 0.98077 1.22095 1.03517 0.94988 0.97073 1.22006 1.02246 0.92254 0.82928 1.92740 1.94591 1.84215 1.49827 1.22877 0.99323 0.84379 0.94202 1.74369 1.19323 1.23653 1.03188 1.73861 1.22152 0.98431 1.22627 1.25305 0.94253 0.99143 0.88737 1.20123 1.01457 0.85336 0.98388 1.18835 0.92174 0.93519 0.95039 1.21580 1.16401 1.00276 1.19540 0.90818 1.26011 0.94905 1.02955 0.95903 1.70122 1.19403 1.36486 1.31530 0.85447 0.78135 0.78358 0.78791 1.19262 1.21388 1.18428 1.46202 1.37957 1.10473 1.22910 1.22476 0.93834 0.93406 0.97736 0.89444 0.86447 0.94175 0.90731 0.92255 0.88842 0.90197 0.89791 0.88799 0.88342 0.89398 1.00119 0.98727 0.92802 0.87220 0.89198 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.17 127.69 1.17 1.32 16 2 N -0.45 -10.28 4.81 -730.91 -3.51 -13.79 16 3 C 0.07 1.46 4.44 86.31 0.38 1.84 16 4 C -0.14 -1.87 5.60 30.60 0.17 -1.70 16 5 C 0.06 0.78 7.55 71.98 0.54 1.32 16 6 F -0.23 -4.22 17.36 44.97 0.78 -3.44 16 7 C 0.35 11.29 7.20 260.11 1.87 13.16 16 8 N -0.36 -14.38 11.16 -58.00 -0.65 -15.03 16 9 N -0.33 -14.83 12.18 -49.54 -0.60 -15.44 16 10 C 0.19 7.81 7.32 137.64 1.01 8.81 16 11 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 12 C 0.04 2.23 4.95 29.85 0.15 2.37 16 13 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 14 H 0.07 3.71 7.74 -2.92 -0.02 3.69 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 17 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 N -0.48 -15.47 3.21 -538.17 -1.73 -17.20 16 22 C 0.07 1.44 9.21 127.77 1.18 2.62 16 23 H 0.09 1.10 5.42 -2.39 -0.01 1.09 16 24 H 0.12 1.05 6.30 -2.39 -0.02 1.03 16 25 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 1.80 7.75 -2.39 -0.02 1.78 16 27 H 0.06 1.12 8.12 -2.38 -0.02 1.10 16 28 H 0.09 0.96 6.47 -2.39 -0.02 0.94 16 29 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 3.36 7.92 -2.39 -0.02 3.34 16 33 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 34 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 35 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.11 1.62 7.86 -2.39 -0.02 1.60 16 38 H 0.09 2.21 7.88 -2.38 -0.02 2.19 16 39 H 0.11 1.93 7.57 -2.39 -0.02 1.91 16 Total: -1.00 -75.02 326.56 4.97 -70.05 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.04 Total: 5.74 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 7.33 Total: 0.61 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.20 Total: -117.99 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.78 Total: -3.44 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -75.02 4.97 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121494072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.815 kcal (2) G-P(sol) polarization free energy of solvation -75.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds