Wall clock time and date at job start Mon Mar 30 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47435 * 2 1 4 4 C 1.42901 * 113.99977 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46970 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99685 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99984 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00209 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.49227 * 35.06907 * 8 7 5 10 10 C 1.53033 * 109.49956 * 155.16363 * 8 7 5 11 11 C 1.53041 * 109.53881 * 58.59000 * 10 8 7 12 12 C 1.53197 * 109.31074 * 61.36452 * 11 10 8 13 13 H 1.08995 * 109.58815 * 65.15206 * 12 11 10 14 14 C 1.53000 * 109.70112 * 185.50980 * 12 11 10 15 15 N 1.46931 * 108.77454 * 305.36470 * 12 11 10 16 16 C 1.36934 * 120.63157 * 233.58321 * 15 12 11 17 17 H 1.08001 * 119.99904 * 29.04707 * 16 15 12 18 18 C 1.38810 * 120.00087 * 209.04299 * 16 15 12 19 19 N 1.31614 * 119.99898 * 15.01571 * 18 16 15 20 20 Si 1.86802 * 120.00040 * 195.01219 * 18 16 15 21 21 H 1.48510 * 109.46978 * 59.99964 * 20 18 16 22 22 H 1.48492 * 109.47119 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47435 * 300.00459 * 20 18 16 24 24 C 1.46922 * 118.73560 * 53.61134 * 15 12 11 25 25 H 1.08999 * 109.47566 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46655 * 299.99557 * 1 2 3 27 27 H 1.08998 * 109.47199 * 59.99256 * 1 2 3 28 28 H 1.08999 * 109.46916 * 240.00025 * 2 1 3 29 29 H 1.09007 * 109.47193 * 120.00674 * 2 1 3 30 30 H 1.09001 * 109.46705 * 300.00001 * 4 3 2 31 31 H 1.08996 * 109.47198 * 59.99696 * 4 3 2 32 32 H 0.97003 * 119.99603 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.46224 * 178.60616 * 10 8 7 34 34 H 1.09001 * 109.46232 * 298.56925 * 10 8 7 35 35 H 1.09001 * 109.49678 * 301.41558 * 11 10 8 36 36 H 1.09000 * 109.49945 * 181.31561 * 11 10 8 37 37 H 1.09004 * 109.47188 * 179.35819 * 14 12 11 38 38 H 1.08994 * 109.47355 * 299.36060 * 14 12 11 39 39 H 1.09003 * 109.47321 * 59.36239 * 14 12 11 40 40 H 0.97000 * 120.00102 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.58525 * 186.60054 * 24 15 12 42 42 H 1.09006 * 109.70619 * 66.24800 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8196 2.9161 0.0001 6 8 2.9611 3.7728 0.0005 7 7 5.1210 3.2661 0.0002 8 6 5.4989 4.6815 0.0003 9 1 4.7800 5.2499 0.5907 10 6 6.8954 4.8374 0.6064 11 6 7.8994 4.0129 -0.2026 12 6 7.9369 4.5320 -1.6435 13 1 8.3267 5.5498 -1.6552 14 6 8.8333 3.6295 -2.4936 15 7 6.5713 4.5213 -2.1856 16 6 6.2940 3.8838 -3.3654 17 1 6.8824 3.0308 -3.6695 18 6 5.2565 4.3339 -4.1703 19 7 4.7344 5.5248 -3.9663 20 14 4.6015 3.2496 -5.5432 21 1 4.0854 1.9811 -4.9685 22 1 3.5028 3.9554 -6.2499 23 1 5.6953 2.9497 -6.5018 24 6 5.5091 5.2082 -1.4382 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.8340 0.9763 0.8892 31 1 3.8333 0.9766 -0.8907 32 1 5.8076 2.5808 -0.0005 33 1 7.1861 5.8877 0.5835 34 1 6.8848 4.4861 1.6382 35 1 7.5957 2.9661 -0.2008 36 1 8.8896 4.1057 0.2434 37 1 8.8483 3.9955 -3.5203 38 1 9.8457 3.6388 -2.0899 39 1 8.4447 2.6113 -2.4766 40 1 4.0097 5.8395 -4.5291 41 1 4.5454 5.0095 -1.9069 42 1 5.6985 6.2816 -1.4330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131798315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:22 Heat of formation + Delta-G solvation = -88.634343 kcal Electronic energy + Delta-G solvation = -22266.417015 eV Core-core repulsion = 19053.132472 eV Total energy + Delta-G solvation = -3213.284543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03227 -39.43201 -38.37788 -35.74845 -34.49500 -32.73734 -32.03645 -31.70969 -28.70581 -27.62482 -26.55775 -23.88068 -23.68696 -22.34931 -21.82297 -20.36371 -18.42597 -18.15276 -17.72965 -17.37477 -17.01010 -16.36068 -15.88193 -15.71850 -15.49860 -15.12409 -14.81538 -14.52232 -14.02375 -13.97681 -13.84501 -13.58350 -13.23683 -12.96784 -12.84893 -12.58732 -12.55282 -12.40211 -12.32142 -12.17629 -12.11694 -12.07021 -11.55547 -11.20612 -11.03837 -10.75157 -10.66172 -10.49774 -9.93095 -8.56729 -7.80746 -5.26276 1.40965 1.44292 1.49850 1.69828 2.01572 2.51200 3.11182 3.35295 3.64738 3.83371 4.05957 4.11681 4.14526 4.16999 4.21743 4.33121 4.35069 4.48469 4.51864 4.67145 4.75611 4.81228 4.84676 4.98402 5.01220 5.06421 5.11001 5.14155 5.24403 5.29351 5.34871 5.59501 5.63979 5.70823 5.75866 5.76663 6.14520 6.45290 6.73036 7.19630 7.41394 7.94658 8.45363 9.24330 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.007409 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.887981 B = 3778.474328 C = 4962.530279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.405 6.405 4 C 0.052 3.948 5 C 0.501 3.499 6 O -0.586 6.586 7 N -0.687 5.687 8 C 0.129 3.871 9 H 0.060 0.940 10 C -0.109 4.109 11 C -0.118 4.118 12 C 0.152 3.848 13 H 0.011 0.989 14 C -0.128 4.128 15 N -0.594 5.594 16 C -0.236 4.236 17 H 0.080 0.920 18 C -0.059 4.059 19 N -0.939 5.939 20 Si 0.952 3.048 21 H -0.280 1.280 22 H -0.307 1.307 23 H -0.269 1.269 24 C 0.170 3.830 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.410 0.590 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.241 0.759 41 H 0.046 0.954 42 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -12.642 11.653 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.324 6.324 4 C -0.027 4.027 5 C 0.288 3.712 6 O -0.465 6.465 7 N -0.340 5.340 8 C 0.023 3.977 9 H 0.078 0.922 10 C -0.147 4.147 11 C -0.157 4.157 12 C 0.047 3.953 13 H 0.028 0.972 14 C -0.185 4.185 15 N -0.318 5.318 16 C -0.366 4.366 17 H 0.098 0.902 18 C -0.253 4.253 19 N -0.587 5.587 20 Si 0.781 3.219 21 H -0.206 1.206 22 H -0.234 1.234 23 H -0.195 1.195 24 C 0.043 3.957 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 3.167 -11.815 11.552 16.825 hybrid contribution -0.480 -0.131 -1.365 1.453 sum 2.687 -11.946 10.187 15.928 Atomic orbital electron populations 1.21778 0.93168 1.03581 1.02260 1.22812 0.96360 0.82059 1.01698 1.87995 1.19815 1.28874 1.95748 1.22250 0.83311 0.92522 1.04637 1.20930 0.82942 0.91664 0.75654 1.90671 1.51028 1.53661 1.51186 1.45598 1.06240 1.08647 1.73515 1.21457 0.97126 0.81797 0.97370 0.92153 1.21655 0.92071 1.01477 0.99483 1.21954 0.99501 0.99420 0.94817 1.20794 0.84870 0.96131 0.93478 0.97164 1.21722 0.98540 0.99258 0.99024 1.44263 1.02897 1.62594 1.22052 1.19416 1.13995 1.06975 0.96254 0.90227 1.25792 1.02566 0.96575 1.00396 1.70161 1.28305 1.18308 1.41888 0.85562 0.77727 0.78535 0.80048 1.20595 1.23387 1.19499 1.20851 0.93251 0.92031 0.89558 0.88082 0.92355 0.93515 0.92394 0.90676 0.86452 0.89177 0.75253 0.91130 0.89389 0.91396 0.89088 0.94814 0.90593 0.92674 0.94983 0.93551 0.98903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 10.28 71.98 0.74 -2.34 16 2 C 0.05 1.04 6.66 71.98 0.48 1.52 16 3 O -0.40 -13.53 9.88 -129.94 -1.28 -14.81 16 4 C 0.05 1.51 6.42 71.24 0.46 1.96 16 5 C 0.50 19.60 7.87 87.66 0.69 20.29 16 6 O -0.59 -29.63 16.16 16.01 0.26 -29.37 16 7 N -0.69 -23.65 4.92 -442.18 -2.17 -25.82 16 8 C 0.13 4.94 2.81 45.07 0.13 5.06 16 9 H 0.06 2.49 7.58 -2.38 -0.02 2.48 16 10 C -0.11 -3.08 5.58 30.62 0.17 -2.91 16 11 C -0.12 -3.16 5.21 30.67 0.16 -3.00 16 12 C 0.15 5.62 3.49 44.98 0.16 5.78 16 13 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 14 C -0.13 -4.17 7.95 71.98 0.57 -3.60 16 15 N -0.59 -28.24 2.91 -675.22 -1.96 -30.21 16 16 C -0.24 -12.43 8.60 84.03 0.72 -11.71 16 17 H 0.08 3.95 6.21 -2.91 -0.02 3.93 16 18 C -0.06 -3.37 4.96 84.86 0.42 -2.95 16 19 N -0.94 -59.02 11.14 21.65 0.24 -58.78 16 20 Si 0.95 46.58 29.58 68.60 2.03 48.61 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C 0.17 8.54 4.89 86.36 0.42 8.96 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.41 11.29 6.77 -92.71 -0.63 10.66 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.68 6.40 -2.39 -0.02 1.67 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.03 1.26 7.62 -2.38 -0.02 1.24 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.75 7.44 -2.39 -0.02 1.73 16 40 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 42 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 Total: -1.00 -77.92 332.87 2.59 -75.32 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.37 Total: 18.00 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.12 Total: 17.07 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.90 Total: -114.81 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.02 Total: -44.18 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.92 2.59 -75.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131798315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.310 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds